Wall clock time and date at job start Tue Mar 31 2020 03:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47063 * 2 1 4 4 C 1.50697 * 109.46914 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00437 * 359.97438 * 4 3 2 6 6 N 1.34785 * 120.00140 * 180.02562 * 4 3 2 7 7 C 1.47060 * 122.49616 * 4.09309 * 6 4 3 8 8 S 1.83561 * 104.97894 * 175.96104 * 7 6 4 9 9 C 1.84244 * 94.86156 * 341.48817 * 8 7 6 10 10 C 1.46132 * 122.49921 * 184.09385 * 6 4 3 11 11 H 1.09001 * 109.43113 * 90.73816 * 10 6 4 12 12 C 1.50701 * 109.47122 * 330.76965 * 10 6 4 13 13 O 1.21276 * 119.99798 * 318.21215 * 12 10 6 14 14 N 1.34770 * 119.99796 * 138.48827 * 12 10 6 15 15 C 1.46504 * 119.99973 * 179.72592 * 14 12 10 16 16 C 1.50700 * 109.47390 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99505 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99993 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99847 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00290 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46633 * 89.99864 * 20 18 16 22 22 H 1.48494 * 109.47397 * 210.00294 * 20 18 16 23 23 H 1.48499 * 109.47017 * 330.00532 * 20 18 16 24 24 H 1.09000 * 109.47413 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47126 * 300.00580 * 1 2 3 26 26 H 1.09001 * 109.47272 * 59.99754 * 1 2 3 27 27 H 1.08993 * 109.46988 * 239.99735 * 2 1 3 28 28 H 1.08999 * 109.46929 * 119.99552 * 2 1 3 29 29 H 1.09001 * 109.47551 * 60.00234 * 3 2 1 30 30 H 1.08994 * 109.47261 * 299.99836 * 3 2 1 31 31 H 1.08996 * 110.34154 * 57.08414 * 7 6 4 32 32 H 1.09004 * 110.42440 * 294.88059 * 7 6 4 33 33 H 1.08996 * 111.35168 * 275.51248 * 9 8 7 34 34 H 1.09006 * 111.38849 * 150.79281 * 9 8 7 35 35 H 0.97001 * 120.00321 * 359.72222 * 14 12 10 36 36 H 1.09003 * 109.46611 * 299.99885 * 15 14 12 37 37 H 1.08999 * 109.46923 * 59.99674 * 15 14 12 38 38 H 0.97004 * 120.00359 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4424 0.0006 5 8 4.1534 0.3922 0.0015 6 7 4.2209 2.6097 0.0013 7 6 3.5446 3.9125 0.0899 8 16 4.9009 5.1463 0.1762 9 6 6.1886 3.9280 0.6783 10 6 5.6782 2.6749 -0.0861 11 1 5.9761 2.7413 -1.1325 12 6 6.2743 1.4345 0.5280 13 8 5.8183 0.9897 1.5600 14 7 7.3176 0.8228 -0.0667 15 6 7.9009 -0.3796 0.5335 16 6 9.0440 -0.8637 -0.3210 17 1 9.3096 -0.3289 -1.2209 18 6 9.7512 -1.9887 0.0467 19 7 10.7490 -2.4108 -0.6988 20 14 9.2931 -2.9124 1.6043 21 1 8.2849 -3.9544 1.2834 22 1 10.5050 -3.5547 2.1735 23 1 8.7251 -1.9624 2.5943 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 2.9310 3.9604 0.9895 32 1 2.9320 4.0841 -0.7953 33 1 6.1821 3.7652 1.7560 34 1 7.1772 4.2288 0.3315 35 1 7.6822 1.1786 -0.8921 36 1 8.2677 -0.1454 1.5329 37 1 7.1411 -1.1584 0.5986 38 1 11.2469 -3.2021 -0.4400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331215662.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:02 Heat of formation + Delta-G solvation = -92.673926 kcal Electronic energy + Delta-G solvation = -21055.571517 eV Core-core repulsion = 17830.349389 eV Total energy + Delta-G solvation = -3225.222128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81126 -39.86308 -37.40714 -36.16058 -35.35612 -34.45829 -32.66654 -30.02904 -28.85674 -28.25930 -25.50644 -24.03024 -22.75187 -21.68603 -20.52945 -19.33225 -18.43306 -18.27367 -17.84386 -17.00998 -16.87447 -16.27487 -16.08079 -15.90689 -15.54695 -15.21936 -14.74730 -14.60953 -14.48037 -14.23703 -13.99743 -13.86515 -13.50965 -13.24673 -13.06651 -12.87567 -12.76341 -12.65425 -12.05009 -11.98361 -11.84325 -11.69500 -11.66625 -10.96022 -10.93097 -10.76487 -10.07541 -9.90826 -8.91207 -8.43916 -6.50269 0.49204 0.81611 1.27059 1.29405 1.34257 1.42557 1.57781 1.88932 2.24017 2.39112 2.91174 3.14198 3.54908 3.67605 3.84522 3.93863 4.02652 4.16172 4.21742 4.28614 4.46490 4.51971 4.68290 4.68418 4.73821 4.84310 4.97099 5.00421 5.21631 5.21923 5.24596 5.44345 5.49199 6.02483 6.06366 6.49458 6.77615 7.03967 7.13048 7.39474 8.70892 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.005096 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.227071 B = 5493.472168 C = 6906.155605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.120 4.120 4 C 0.507 3.493 5 O -0.555 6.555 6 N -0.613 5.613 7 C 0.152 3.848 8 S -0.246 6.246 9 C -0.062 4.062 10 C 0.118 3.882 11 H 0.119 0.881 12 C 0.517 3.483 13 O -0.577 6.577 14 N -0.702 5.702 15 C 0.242 3.758 16 C -0.546 4.546 17 H 0.062 0.938 18 C 0.031 3.969 19 N -0.928 5.928 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.266 1.266 23 H -0.264 1.264 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.406 0.594 36 H 0.012 0.988 37 H -0.003 1.003 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.224 16.563 0.061 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.159 4.159 4 C 0.297 3.703 5 O -0.432 6.432 6 N -0.351 5.351 7 C -0.080 4.080 8 S -0.019 6.019 9 C -0.211 4.211 10 C 0.009 3.991 11 H 0.136 0.864 12 C 0.302 3.698 13 O -0.457 6.457 14 N -0.352 5.352 15 C 0.118 3.882 16 C -0.584 4.584 17 H 0.080 0.920 18 C -0.170 4.170 19 N -0.567 5.567 20 Si 0.758 3.242 21 H -0.196 1.196 22 H -0.191 1.191 23 H -0.189 1.189 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.158 0.842 33 H 0.114 0.886 34 H 0.168 0.832 35 H 0.241 0.759 36 H 0.030 0.970 37 H 0.015 0.985 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.073 16.740 0.567 26.144 hybrid contribution 0.694 -1.989 0.453 2.155 sum -19.380 14.751 1.020 24.376 Atomic orbital electron populations 1.21724 0.92692 1.02392 1.03156 1.21278 0.97436 0.95026 1.01413 1.21772 0.86962 1.00188 1.07028 1.21691 0.92371 0.81759 0.74488 1.90836 1.70820 1.32438 1.49058 1.48361 1.04121 1.07063 1.75558 1.24272 0.95402 0.79883 1.08418 1.88164 1.07291 1.15957 1.90494 1.24640 1.01863 0.91072 1.03535 1.21822 0.82490 0.93070 1.01756 0.86356 1.20564 0.79479 0.85128 0.84647 1.90612 1.61655 1.66912 1.26533 1.45862 1.32879 1.28536 1.27885 1.18964 0.91911 0.83658 0.93620 1.21269 1.14629 1.12361 1.10094 0.92029 1.25524 0.94282 0.97449 0.99743 1.69965 1.21366 1.25363 1.39982 0.85911 0.78486 0.79415 0.80367 1.19590 1.19076 1.18887 0.92713 0.91388 0.90813 0.93252 0.94258 0.86312 0.85122 0.86369 0.84180 0.88558 0.83193 0.75863 0.97003 0.98482 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.11 -2.42 5.22 30.59 0.16 -2.26 16 3 C -0.12 -2.06 4.68 29.85 0.14 -1.92 16 4 C 0.51 14.61 7.22 87.65 0.63 15.24 16 5 O -0.56 -23.33 12.76 19.54 0.25 -23.09 16 6 N -0.61 -14.62 3.13 -806.65 -2.53 -17.15 16 7 C 0.15 2.09 6.83 127.66 0.87 2.96 16 8 S -0.25 -4.14 23.32 -56.49 -1.32 -5.46 16 9 C -0.06 -1.31 7.04 72.81 0.51 -0.80 16 10 C 0.12 3.19 3.28 45.14 0.15 3.34 16 11 H 0.12 2.78 8.03 -2.39 -0.02 2.76 16 12 C 0.52 20.74 4.90 87.66 0.43 21.17 16 13 O -0.58 -28.16 14.89 19.55 0.29 -27.87 16 14 N -0.70 -30.43 5.55 -466.79 -2.59 -33.02 16 15 C 0.24 12.85 4.50 85.63 0.38 13.24 16 16 C -0.55 -31.56 9.83 25.60 0.25 -31.30 16 17 H 0.06 3.69 7.84 -2.91 -0.02 3.67 16 18 C 0.03 1.80 5.47 84.65 0.46 2.26 16 19 N -0.93 -56.75 13.96 21.45 0.30 -56.45 16 20 Si 0.93 46.41 27.47 68.60 1.88 48.29 16 21 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.26 -13.16 6.54 99.48 0.65 -12.51 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 0.75 8.14 -2.38 -0.02 0.74 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 28 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 29 H 0.12 1.44 8.01 -2.39 -0.02 1.42 16 30 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.12 1.21 8.02 -2.39 -0.02 1.19 16 32 H 0.14 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.10 2.31 8.10 -2.39 -0.02 2.29 16 34 H 0.15 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.41 15.33 8.24 -92.71 -0.76 14.56 16 36 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 37 H 0.00 -0.16 7.57 -2.39 -0.02 -0.18 16 38 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -81.64 327.10 1.24 -80.40 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.24 Total: 13.63 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 4.71 Total: 20.71 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.82 Total: -106.62 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: 0.54 Total: -50.96 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.29 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -1.32 Total: -5.46 kcal Total: -81.64 1.24 -80.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331215662.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.272 kcal (2) G-P(sol) polarization free energy of solvation -81.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds