Wall clock time and date at job start Tue Mar 31 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00281 * 2 1 4 4 H 1.48498 * 109.47342 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47361 * 300.00414 * 3 2 1 6 6 H 1.48498 * 109.47199 * 60.00524 * 3 2 1 7 7 C 1.37880 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99881 * 175.08923 * 7 2 1 9 9 C 1.50701 * 119.99956 * 355.36173 * 7 2 1 10 10 C 1.52999 * 115.54788 * 279.34132 * 9 7 2 11 11 N 1.46498 * 109.46946 * 294.37212 * 10 9 7 12 12 S 1.65606 * 119.99867 * 159.13188 * 11 10 9 13 13 O 1.42107 * 104.27700 * 181.07080 * 12 11 10 14 14 O 1.42098 * 104.27496 * 308.93162 * 12 11 10 15 15 C 1.81404 * 104.44804 * 65.00411 * 12 11 10 16 16 C 1.50698 * 109.46825 * 180.02562 * 15 12 11 17 17 C 1.41381 * 126.80546 * 89.99920 * 16 15 12 18 18 C 1.35451 * 103.98375 * 179.97438 * 17 16 15 19 19 O 1.34039 * 106.45048 * 359.97438 * 18 17 16 20 20 N 1.20927 * 111.56220 * 359.70576 * 19 18 17 21 21 C 1.53001 * 117.49604 * 133.63304 * 9 7 2 22 22 C 1.52994 * 117.49782 * 65.01370 * 9 7 2 23 23 H 0.96999 * 119.99464 * 4.99425 * 1 2 3 24 24 H 1.08995 * 109.47559 * 54.37425 * 10 9 7 25 25 H 1.08998 * 109.47148 * 174.37743 * 10 9 7 26 26 H 0.97005 * 120.00585 * 339.13502 * 11 10 9 27 27 H 1.09007 * 109.46878 * 299.99780 * 15 12 11 28 28 H 1.08988 * 109.47284 * 59.99521 * 15 12 11 29 29 H 1.07996 * 128.00551 * 0.03073 * 17 16 15 30 30 H 1.08002 * 126.77617 * 179.97438 * 18 17 16 31 31 H 1.08996 * 117.50428 * 0.02562 * 21 9 7 32 32 H 1.09004 * 117.49386 * 145.01737 * 21 9 7 33 33 H 1.09006 * 117.49702 * 214.97768 * 22 9 7 34 34 H 1.09002 * 117.50120 * 359.97373 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 -0.0806 9 6 1.2546 -2.4971 0.1044 10 6 0.8280 -2.9009 1.5171 11 7 2.0178 -3.1691 2.3286 12 16 1.9215 -3.1190 3.9811 13 8 3.2446 -3.3984 4.4179 14 8 1.3072 -1.8681 4.2586 15 6 0.8075 -4.4846 4.4112 16 6 0.6381 -4.5424 5.9075 17 6 -0.3437 -3.8748 6.6751 18 6 -0.0730 -4.2480 7.9488 19 8 0.9865 -5.0668 7.8873 20 7 1.3623 -5.2226 6.7485 21 6 1.6440 -3.6162 -0.8636 22 6 0.3214 -2.8699 -1.0492 23 1 -0.4849 0.8369 -0.0731 24 1 0.2549 -2.0914 1.9690 25 1 0.2119 -3.7987 1.4679 26 1 2.8621 -3.3759 1.8981 27 1 -0.1630 -4.3233 3.9419 28 1 1.2308 -5.4242 4.0565 29 1 -1.1284 -3.2197 6.3266 30 1 -0.6056 -3.9455 8.8383 31 1 2.4428 -3.4102 -1.5760 32 1 1.5964 -4.6405 -0.4939 33 1 -0.5965 -3.4033 -0.8017 34 1 0.2494 -2.1726 -1.8838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331668666.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:15 Heat of formation + Delta-G solvation = -8.233146 kcal Electronic energy + Delta-G solvation = -20644.093245 eV Core-core repulsion = 17286.699650 eV Total energy + Delta-G solvation = -3357.393595 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.12546 -38.78980 -38.19687 -37.08237 -36.06554 -34.88224 -33.91076 -32.85230 -30.34702 -27.82207 -26.61334 -24.31999 -22.86436 -22.59989 -21.16667 -20.36050 -19.06447 -18.93512 -18.57640 -18.08686 -17.35848 -17.08540 -16.57655 -16.04665 -15.88928 -15.25389 -14.93501 -14.58250 -14.44613 -13.95634 -13.77108 -13.73660 -13.26801 -13.14827 -13.00194 -12.88980 -12.85599 -12.76508 -12.49515 -12.36094 -11.93610 -11.31865 -11.14809 -10.92915 -10.70837 -10.37850 -10.20791 -9.87828 -8.08968 -6.17489 -0.94347 0.50556 1.10650 1.36262 1.42616 1.49096 1.73234 2.30370 2.42891 2.64715 2.88055 3.12965 3.20944 3.47947 3.57703 3.93534 4.04537 4.22081 4.25581 4.50081 4.60789 4.62137 4.69189 4.72428 4.77802 5.01018 5.09716 5.35698 5.37074 5.69709 5.78245 5.85623 6.22650 6.44622 6.87533 7.13275 7.50107 8.98527 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.023836 B = 0.004852 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.409422 B = 5769.608083 C = 6182.933160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 0.929 3.071 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.288 1.288 7 C -0.502 4.502 8 H 0.048 0.952 9 C 0.000 4.000 10 C 0.161 3.839 11 N -1.094 6.094 12 S 2.617 3.383 13 O -0.993 6.993 14 O -0.985 6.985 15 C -0.533 4.533 16 C -0.018 4.018 17 C -0.243 4.243 18 C -0.031 4.031 19 O 0.109 5.891 20 N -0.381 5.381 21 C -0.182 4.182 22 C -0.153 4.153 23 H 0.259 0.741 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.420 0.580 27 H 0.183 0.817 28 H 0.171 0.829 29 H 0.200 0.800 30 H 0.277 0.723 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -11.068 12.060 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.172 4.172 3 Si 0.756 3.244 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.215 1.215 7 C -0.540 4.540 8 H 0.066 0.934 9 C -0.001 4.001 10 C 0.034 3.966 11 N -0.855 5.855 12 S 2.711 3.289 13 O -0.983 6.983 14 O -0.975 6.975 15 C -0.663 4.663 16 C -0.176 4.176 17 C -0.265 4.265 18 C -0.112 4.112 19 O 0.038 5.962 20 N -0.083 5.083 21 C -0.219 4.219 22 C -0.192 4.192 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.255 0.745 27 H 0.200 0.800 28 H 0.189 0.811 29 H 0.217 0.783 30 H 0.292 0.708 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.402 -11.087 12.594 17.120 hybrid contribution -0.293 1.277 -0.856 1.565 sum -3.695 -9.810 11.738 15.738 Atomic orbital electron populations 1.70018 1.06499 1.27033 1.50295 1.25504 0.95577 1.01275 0.94800 0.85943 0.79502 0.81481 0.77436 1.19544 1.20180 1.21479 1.20702 0.92547 0.90485 1.50267 0.93376 1.19058 1.00129 0.93207 0.87750 1.20841 0.84898 0.98634 0.92179 1.55049 1.19565 1.87285 1.23599 1.04597 0.74758 0.76313 0.73252 1.93530 1.36636 1.86778 1.81334 1.93567 1.79392 1.40194 1.84362 1.28956 1.20192 1.21729 0.95420 1.22795 0.97784 1.01082 0.95918 1.23308 1.03644 1.06355 0.93208 1.27086 0.89379 0.92801 1.01890 1.84805 1.38357 1.50960 1.22101 1.73936 1.22219 1.21207 0.90952 1.23008 0.98240 0.96509 1.04131 1.22461 0.92968 1.02026 1.01749 0.93161 0.92783 0.90395 0.74503 0.79961 0.81109 0.78331 0.70784 0.90891 0.87932 0.89630 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.31 12.86 21.45 0.28 -50.03 16 2 C 0.03 1.59 5.44 84.66 0.46 2.06 16 3 Si 0.93 44.41 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.50 -26.55 8.73 25.60 0.22 -26.32 16 8 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 9 C 0.00 0.02 1.41 -52.93 -0.07 -0.05 16 10 C 0.16 6.17 6.00 86.38 0.52 6.69 16 11 N -1.09 -38.46 5.77 -187.50 -1.08 -39.54 16 12 S 2.62 90.14 5.44 -56.49 -0.31 89.84 16 13 O -0.99 -39.78 18.08 -127.65 -2.31 -42.09 16 14 O -0.99 -42.01 17.43 -127.65 -2.23 -44.23 16 15 C -0.53 -12.60 6.66 71.24 0.47 -12.13 16 16 C -0.02 -0.45 6.59 43.58 0.29 -0.17 16 17 C -0.24 -4.69 11.12 22.40 0.25 -4.44 16 18 C -0.03 -0.43 12.30 67.18 0.83 0.40 16 19 O 0.11 2.32 11.20 71.63 0.80 3.13 16 20 N -0.38 -10.53 12.07 -49.55 -0.60 -11.13 16 21 C -0.18 -6.74 9.96 30.59 0.30 -6.44 16 22 C -0.15 -6.41 9.40 30.59 0.29 -6.12 16 23 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 24 H 0.05 2.43 7.60 -2.39 -0.02 2.41 16 25 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 26 H 0.42 14.23 8.66 -96.74 -0.84 13.40 16 27 H 0.18 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.17 3.26 8.14 -2.40 -0.02 3.24 16 29 H 0.20 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.28 0.37 8.06 -2.91 -0.02 0.35 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 34 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -76.80 316.76 0.43 -76.38 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.29 Total: 17.78 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.56 Total: -46.53 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -1.40 Total: -100.71 kcal Atomic # 8 Polarization: -79.47 SS G_CDS: -3.73 Total: -83.20 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 90.14 SS G_CDS: -0.31 Total: 89.84 kcal Total: -76.80 0.43 -76.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331668666.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.142 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds