Wall clock time and date at job start Tue Mar 31 2020 03:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86798 * 120.00366 * 2 1 4 4 H 1.48503 * 109.47359 * 270.00446 * 3 2 1 5 5 H 1.48500 * 109.46858 * 30.00248 * 3 2 1 6 6 H 1.48497 * 109.47221 * 149.99973 * 3 2 1 7 7 C 1.40226 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99682 * 197.86538 * 7 2 1 9 9 C 1.41103 * 120.00323 * 17.86970 * 7 2 1 10 10 C 1.40889 * 120.10471 * 204.63401 * 9 7 2 11 11 C 1.36325 * 119.89184 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.10489 * 0.02693 * 11 10 9 13 13 C 1.47640 * 119.89335 * 179.97438 * 12 11 10 14 14 O 1.21592 * 120.00030 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00120 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00157 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47280 * 180.02562 * 16 15 13 18 18 N 1.46495 * 109.47417 * 180.02562 * 17 16 15 19 19 C 1.34434 * 126.82812 * 124.99639 * 18 17 16 20 20 N 1.30831 * 108.07979 * 179.97438 * 19 18 17 21 21 C 1.33239 * 109.83068 * 0.02562 * 20 19 18 22 22 N 1.30716 * 108.94653 * 0.26109 * 21 20 19 23 23 C 1.40014 * 120.21175 * 0.22435 * 12 11 10 24 24 C 1.36321 * 120.10286 * 359.48876 * 23 12 11 25 25 H 0.96998 * 120.00093 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.05272 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.94451 * 179.97438 * 11 10 9 28 28 H 0.96999 * 119.99851 * 359.97438 * 15 13 12 29 29 H 1.09000 * 109.46953 * 59.99756 * 16 15 13 30 30 H 1.08998 * 109.47009 * 300.00233 * 16 15 13 31 31 H 1.09000 * 109.47440 * 59.99916 * 17 16 15 32 32 H 1.09005 * 109.47061 * 300.00340 * 17 16 15 33 33 H 1.08001 * 125.95844 * 359.97438 * 19 18 17 34 34 H 1.07996 * 125.53074 * 179.97438 * 21 20 19 35 35 H 1.07996 * 119.94637 * 179.72143 * 23 12 11 36 36 H 1.08000 * 120.04997 * 180.24929 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4380 2.6526 0.7001 6 1 3.5381 1.4400 0.7000 7 6 2.0075 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2864 9 6 1.3531 -2.4068 -0.3760 10 6 1.8266 -3.6495 0.0892 11 6 1.1913 -4.7988 -0.2768 12 6 0.0703 -4.7456 -1.1139 13 6 -0.6138 -5.9933 -1.5077 14 8 -0.2032 -7.0648 -1.1055 15 7 -1.6934 -5.9446 -2.3130 16 6 -2.3719 -7.1827 -2.7043 17 6 -3.5562 -6.8497 -3.6138 18 7 -4.2351 -8.0876 -4.0046 19 6 -5.5381 -8.3772 -3.8446 20 7 -5.7490 -9.5768 -4.3220 21 6 -4.6098 -10.0828 -4.7928 22 7 -3.6527 -9.2103 -4.6155 23 6 -0.4009 -3.5134 -1.5830 24 6 0.2243 -2.3584 -1.2177 25 1 -0.4850 0.8400 0.0004 26 1 2.6920 -3.6915 0.7339 27 1 1.5539 -5.7519 0.0790 28 1 -2.0211 -5.0898 -2.6336 29 1 -2.7311 -7.6973 -1.8131 30 1 -1.6734 -7.8264 -3.2388 31 1 -3.1966 -6.3353 -4.5050 32 1 -4.2548 -6.2057 -3.0796 33 1 -6.2811 -7.7320 -3.3995 34 1 -4.4948 -11.0576 -5.2431 35 1 -1.2632 -3.4777 -2.2321 36 1 -0.1423 -1.4081 -1.5768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340122711.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:31 Heat of formation + Delta-G solvation = 69.135018 kcal Electronic energy + Delta-G solvation = -20637.169284 eV Core-core repulsion = 17315.812519 eV Total energy + Delta-G solvation = -3321.356766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26572 -39.22908 -37.27008 -35.71721 -33.94529 -33.38851 -31.43065 -30.52009 -29.52568 -28.80918 -26.02337 -24.03249 -22.25626 -21.96628 -21.55822 -20.93182 -19.80041 -17.60302 -17.55232 -16.98231 -16.21036 -15.62643 -15.26638 -15.18802 -14.87635 -14.31865 -14.11091 -13.91868 -13.63432 -13.26947 -12.86225 -12.63141 -12.32988 -12.13064 -11.98667 -11.66690 -11.39979 -11.33834 -11.01428 -10.72026 -10.27563 -10.10977 -10.04129 -9.95968 -9.63098 -9.42623 -9.10305 -8.80541 -7.79882 -7.62120 -7.10681 -4.67349 1.39551 1.97287 2.14523 2.74888 2.86935 2.91350 2.93899 2.96744 3.62626 3.68632 3.77753 4.08185 4.18318 4.48018 4.51385 4.67327 4.85760 4.99787 5.48794 5.59600 5.68873 5.92984 5.96611 6.03458 6.19171 6.25023 6.51090 6.69700 6.73440 6.76120 6.96012 7.05788 7.36184 7.55915 7.69647 7.78996 7.83759 7.99783 8.08173 8.32740 8.56169 8.67962 8.94281 9.81276 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.002714 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.661170 B =10315.411555 C =10929.535482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.440 4.440 8 H 0.086 0.914 9 C 0.128 3.872 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.286 4.286 13 C 0.574 3.426 14 O -0.571 6.571 15 N -0.743 5.743 16 C 0.116 3.884 17 C 0.119 3.881 18 N -0.375 5.375 19 C 0.256 3.744 20 N -0.549 5.549 21 C 0.196 3.804 22 N -0.313 5.313 23 C -0.062 4.062 24 C -0.178 4.178 25 H 0.287 0.713 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.398 0.602 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.220 0.780 34 H 0.217 0.783 35 H 0.088 0.912 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 -4.824 -6.910 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.104 0.896 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.040 4.040 12 C -0.291 4.291 13 C 0.369 3.631 14 O -0.452 6.452 15 N -0.398 5.398 16 C -0.009 4.009 17 C -0.004 4.004 18 N -0.166 5.166 19 C -0.041 4.041 20 N -0.277 5.277 21 C -0.107 4.107 22 N -0.140 5.140 23 C -0.082 4.082 24 C -0.198 4.198 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.234 0.766 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.236 0.764 34 H 0.233 0.767 35 H 0.106 0.894 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.741 -5.647 -6.799 12.431 hybrid contribution -0.061 1.420 -0.009 1.421 sum -8.802 -4.227 -6.808 11.904 Atomic orbital electron populations 1.69737 1.07931 1.30125 1.31581 1.26113 0.94834 1.01951 0.91851 0.86190 0.80602 0.79709 0.79691 1.18892 1.19981 1.18237 1.19882 0.98481 0.91179 1.37250 0.89621 1.17798 0.90370 0.92188 0.87129 1.20729 1.04625 0.92615 1.07852 1.20366 0.92835 0.97198 0.93574 1.18832 1.04687 0.90795 1.14747 1.18595 0.78336 0.89780 0.76340 1.90660 1.66228 1.31726 1.56607 1.45745 1.32294 1.08257 1.53487 1.21276 0.93132 0.88642 0.97895 1.21989 0.96072 0.81845 1.00492 1.50411 1.07591 1.13984 1.44638 1.26129 0.86379 0.94265 0.97309 1.70549 1.28767 1.08660 1.19683 1.26045 0.85629 1.00335 0.98702 1.78127 1.22325 0.95153 1.18443 1.20446 0.97389 0.92548 0.97773 1.20979 0.99934 0.96917 1.01926 0.90177 0.88305 0.88076 0.76634 0.91491 0.90460 0.88439 0.87266 0.76386 0.76655 0.89356 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.83 10.95 55.56 0.61 -17.22 16 2 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 3 Si 0.91 16.77 29.60 -169.99 -5.03 11.74 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.44 -10.66 9.04 -37.75 -0.34 -11.00 16 8 H 0.09 1.99 7.91 -52.48 -0.42 1.57 16 9 C 0.13 3.18 5.57 -106.81 -0.60 2.58 16 10 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 11 C -0.02 -0.47 9.52 -39.61 -0.38 -0.85 16 12 C -0.29 -6.29 5.89 -104.73 -0.62 -6.91 16 13 C 0.57 11.75 7.76 -12.42 -0.10 11.65 16 14 O -0.57 -13.47 16.32 5.28 0.09 -13.39 16 15 N -0.74 -11.21 5.50 -61.32 -0.34 -11.55 16 16 C 0.12 1.51 5.88 -4.04 -0.02 1.49 16 17 C 0.12 1.03 6.67 -4.05 -0.03 1.00 16 18 N -0.38 -3.88 3.69 -62.63 -0.23 -4.11 16 19 C 0.26 2.28 12.63 -90.65 -1.14 1.14 16 20 N -0.55 -6.11 11.19 -15.83 -0.18 -6.29 16 21 C 0.20 2.11 13.03 -91.81 -1.20 0.92 16 22 N -0.31 -3.92 12.56 29.29 0.37 -3.55 16 23 C -0.06 -1.31 9.47 -39.61 -0.38 -1.68 16 24 C -0.18 -4.19 8.64 -39.27 -0.34 -4.53 16 25 H 0.29 5.95 8.29 -40.82 -0.34 5.61 16 26 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 27 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 28 H 0.40 4.97 6.47 -40.82 -0.26 4.70 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.22 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.22 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.09 1.50 6.37 -52.49 -0.33 1.17 16 36 H 0.12 2.86 6.16 -52.49 -0.32 2.53 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -31.44 319.64 -9.33 -40.77 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.83 Total: 9.41 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -5.60 Total: -10.63 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.23 Total: -42.72 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.44 -9.33 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340122711.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.909 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds