Wall clock time and date at job start Tue Mar 31 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86798 * 120.00366 * 2 1 4 4 H 1.48503 * 109.47359 * 270.00446 * 3 2 1 5 5 H 1.48500 * 109.46858 * 30.00248 * 3 2 1 6 6 H 1.48497 * 109.47221 * 149.99973 * 3 2 1 7 7 C 1.40226 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99682 * 197.86538 * 7 2 1 9 9 C 1.41103 * 120.00323 * 17.86970 * 7 2 1 10 10 C 1.40889 * 120.10471 * 204.63401 * 9 7 2 11 11 C 1.36325 * 119.89184 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.10489 * 0.02693 * 11 10 9 13 13 C 1.47640 * 119.89335 * 179.97438 * 12 11 10 14 14 O 1.21592 * 120.00030 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00120 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00157 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47280 * 180.02562 * 16 15 13 18 18 N 1.46495 * 109.47417 * 180.02562 * 17 16 15 19 19 C 1.34434 * 126.82812 * 124.99639 * 18 17 16 20 20 N 1.30831 * 108.07979 * 179.97438 * 19 18 17 21 21 C 1.33239 * 109.83068 * 0.02562 * 20 19 18 22 22 N 1.30716 * 108.94653 * 0.26109 * 21 20 19 23 23 C 1.40014 * 120.21175 * 0.22435 * 12 11 10 24 24 C 1.36321 * 120.10286 * 359.48876 * 23 12 11 25 25 H 0.96998 * 120.00093 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.05272 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.94451 * 179.97438 * 11 10 9 28 28 H 0.96999 * 119.99851 * 359.97438 * 15 13 12 29 29 H 1.09000 * 109.46953 * 59.99756 * 16 15 13 30 30 H 1.08998 * 109.47009 * 300.00233 * 16 15 13 31 31 H 1.09000 * 109.47440 * 59.99916 * 17 16 15 32 32 H 1.09005 * 109.47061 * 300.00340 * 17 16 15 33 33 H 1.08001 * 125.95844 * 359.97438 * 19 18 17 34 34 H 1.07996 * 125.53074 * 179.97438 * 21 20 19 35 35 H 1.07996 * 119.94637 * 179.72143 * 23 12 11 36 36 H 1.08000 * 120.04997 * 180.24929 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4880 2.0464 -1.4001 5 1 1.4380 2.6526 0.7001 6 1 3.5381 1.4400 0.7000 7 6 2.0075 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2864 9 6 1.3531 -2.4068 -0.3760 10 6 1.8266 -3.6495 0.0892 11 6 1.1913 -4.7988 -0.2768 12 6 0.0703 -4.7456 -1.1139 13 6 -0.6138 -5.9933 -1.5077 14 8 -0.2032 -7.0648 -1.1055 15 7 -1.6934 -5.9446 -2.3130 16 6 -2.3719 -7.1827 -2.7043 17 6 -3.5562 -6.8497 -3.6138 18 7 -4.2351 -8.0876 -4.0046 19 6 -5.5381 -8.3772 -3.8446 20 7 -5.7490 -9.5768 -4.3220 21 6 -4.6098 -10.0828 -4.7928 22 7 -3.6527 -9.2103 -4.6155 23 6 -0.4009 -3.5134 -1.5830 24 6 0.2243 -2.3584 -1.2177 25 1 -0.4850 0.8400 0.0004 26 1 2.6920 -3.6915 0.7339 27 1 1.5539 -5.7519 0.0790 28 1 -2.0211 -5.0898 -2.6336 29 1 -2.7311 -7.6973 -1.8131 30 1 -1.6734 -7.8264 -3.2388 31 1 -3.1966 -6.3353 -4.5050 32 1 -4.2548 -6.2057 -3.0796 33 1 -6.2811 -7.7320 -3.3995 34 1 -4.4948 -11.0576 -5.2431 35 1 -1.2632 -3.4777 -2.2321 36 1 -0.1423 -1.4081 -1.5768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340122711.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:30 Heat of formation + Delta-G solvation = 50.803083 kcal Electronic energy + Delta-G solvation = -20637.964217 eV Core-core repulsion = 17315.812519 eV Total energy + Delta-G solvation = -3322.151698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.00505 -40.82800 -38.96548 -36.86574 -35.67844 -34.52182 -32.21765 -32.13651 -31.30348 -29.94413 -27.63935 -25.13143 -23.53651 -22.92695 -22.81342 -22.33818 -21.34992 -19.36931 -18.67987 -18.15245 -17.26881 -17.11827 -16.62200 -16.24536 -15.79941 -15.70862 -15.44634 -15.11990 -15.01516 -14.76132 -14.45971 -13.92671 -13.70309 -13.47430 -13.29768 -13.19115 -12.86212 -12.63087 -12.45625 -12.37633 -11.77491 -11.36801 -11.13501 -11.06941 -10.86914 -10.80349 -10.67080 -10.20355 -9.57376 -9.41713 -8.79966 -6.48693 0.42495 0.67286 1.15381 1.25261 1.39563 1.43743 1.53607 2.00647 2.10147 2.17536 2.38978 2.77108 3.40586 3.53290 3.68172 3.72768 4.02636 4.15709 4.21131 4.29486 4.33108 4.43854 4.66209 4.78828 4.92704 5.03165 5.15428 5.23145 5.30018 5.39873 5.47423 5.58617 5.81511 5.88380 5.93327 5.99208 6.22986 6.53782 6.64396 6.77094 6.88795 7.10165 7.38141 8.15205 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.035540 B = 0.002714 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.661170 B =10315.411555 C =10929.535482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.473 4.473 8 H 0.083 0.917 9 C 0.101 3.899 10 C -0.255 4.255 11 C -0.034 4.034 12 C -0.294 4.294 13 C 0.574 3.426 14 O -0.608 6.608 15 N -0.719 5.719 16 C 0.121 3.879 17 C 0.127 3.873 18 N -0.384 5.384 19 C 0.267 3.733 20 N -0.578 5.578 21 C 0.193 3.807 22 N -0.358 5.358 23 C -0.049 4.049 24 C -0.198 4.198 25 H 0.298 0.702 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.415 0.585 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.153 0.847 33 H 0.265 0.735 34 H 0.239 0.761 35 H 0.133 0.867 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -3.441 -7.799 14.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.500 4.500 8 H 0.101 0.899 9 C 0.098 3.902 10 C -0.275 4.275 11 C -0.053 4.053 12 C -0.298 4.298 13 C 0.367 3.633 14 O -0.492 6.492 15 N -0.373 5.373 16 C -0.004 4.004 17 C 0.005 3.995 18 N -0.175 5.175 19 C -0.029 4.029 20 N -0.306 5.306 21 C -0.109 4.109 22 N -0.186 5.186 23 C -0.068 4.068 24 C -0.217 4.217 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.253 0.747 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.170 0.830 33 H 0.280 0.720 34 H 0.255 0.745 35 H 0.150 0.850 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.709 -4.257 -7.716 13.868 hybrid contribution 0.458 0.889 0.268 1.036 sum -10.251 -3.368 -7.448 13.111 Atomic orbital electron populations 1.69743 1.09090 1.31676 1.31279 1.26884 0.95584 1.04674 0.90866 0.85122 0.79061 0.75334 0.79845 1.18276 1.18865 1.18379 1.20119 0.98731 0.92288 1.38823 0.89872 1.18151 0.91397 0.92704 0.87947 1.20852 1.05209 0.92851 1.08548 1.20507 0.93653 0.96912 0.94237 1.19110 1.04401 0.92109 1.14229 1.18421 0.79391 0.88523 0.76918 1.90644 1.67616 1.32709 1.58276 1.45434 1.30469 1.10004 1.51384 1.21260 0.94087 0.87081 0.97997 1.22063 0.95245 0.81758 1.00415 1.50472 1.08175 1.13945 1.44880 1.27036 0.86442 0.93931 0.95490 1.70579 1.29143 1.09963 1.20908 1.26573 0.85341 1.00987 0.98012 1.78070 1.23835 0.96487 1.20163 1.20755 0.97896 0.91069 0.97106 1.21042 1.00402 0.97649 1.02653 0.89079 0.88037 0.88284 0.74675 0.92733 0.93099 0.87138 0.82966 0.71958 0.74494 0.84958 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.34 10.95 21.87 0.24 -36.11 16 2 C 0.04 1.77 5.14 85.35 0.44 2.20 16 3 Si 0.99 33.66 29.60 68.60 2.03 35.69 16 4 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 5 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 6 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 7 C -0.47 -23.27 9.04 23.46 0.21 -23.06 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.94 16 9 C 0.10 5.11 5.57 -21.28 -0.12 4.99 16 10 C -0.26 -12.46 9.73 22.47 0.22 -12.24 16 11 C -0.03 -1.60 9.52 22.25 0.21 -1.38 16 12 C -0.29 -12.80 5.89 -19.93 -0.12 -12.92 16 13 C 0.57 23.03 7.76 86.73 0.67 23.70 16 14 O -0.61 -28.94 16.32 -4.00 -0.07 -29.01 16 15 N -0.72 -20.09 5.50 -466.16 -2.57 -22.65 16 16 C 0.12 2.95 5.88 86.38 0.51 3.46 16 17 C 0.13 1.77 6.67 86.38 0.58 2.35 16 18 N -0.38 -7.01 3.69 -352.07 -1.30 -8.31 16 19 C 0.27 3.94 12.63 180.36 2.28 6.22 16 20 N -0.58 -11.78 11.19 -204.00 -2.28 -14.06 16 21 C 0.19 3.98 13.03 180.76 2.36 6.34 16 22 N -0.36 -8.63 12.56 -61.25 -0.77 -9.40 16 23 C -0.05 -2.00 9.47 22.25 0.21 -1.79 16 24 C -0.20 -9.28 8.64 22.47 0.19 -9.09 16 25 H 0.30 12.02 8.29 -92.71 -0.77 11.25 16 26 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 27 H 0.10 4.61 7.63 -2.91 -0.02 4.59 16 28 H 0.41 8.79 6.47 -92.71 -0.60 8.19 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.15 0.85 8.09 -2.38 -0.02 0.83 16 33 H 0.26 0.98 8.06 -2.91 -0.02 0.95 16 34 H 0.24 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.13 4.03 6.37 -2.91 -0.02 4.01 16 36 H 0.12 5.49 6.16 -2.91 -0.02 5.47 16 Total: -1.00 -70.87 319.64 3.45 -67.43 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.52 Total: 27.63 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 7.64 Total: -11.22 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -6.68 Total: -90.53 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.07 Total: -29.01 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Total: -70.87 3.45 -67.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340122711.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.228 kcal (2) G-P(sol) polarization free energy of solvation -70.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds