Wall clock time and date at job start Tue Mar 31 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86793 * 119.99927 * 2 1 4 4 H 1.48506 * 109.47124 * 239.99750 * 3 2 1 5 5 H 1.48500 * 109.47358 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47416 * 119.99951 * 3 2 1 7 7 C 1.39934 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99634 * 162.31468 * 7 2 1 9 9 C 1.41439 * 120.00432 * 342.31277 * 7 2 1 10 10 C 1.40782 * 120.17879 * 155.18669 * 9 7 2 11 11 C 1.37717 * 120.03826 * 180.02562 * 10 9 7 12 12 C 1.38368 * 120.41295 * 359.97438 * 11 10 9 13 13 C 1.39881 * 120.36118 * 359.97438 * 12 11 10 14 14 C 1.47876 * 120.02814 * 180.02562 * 13 12 11 15 15 O 1.21554 * 120.00198 * 180.02562 * 14 13 12 16 16 N 1.34774 * 120.00180 * 0.02562 * 14 13 12 17 17 C 1.46507 * 120.00379 * 179.97438 * 16 14 13 18 18 C 1.52991 * 109.47012 * 179.97438 * 17 16 14 19 19 C 1.50709 * 109.46988 * 180.02562 * 18 17 16 20 20 N 1.33241 * 125.52522 * 269.69563 * 19 18 17 21 21 C 1.30830 * 109.82787 * 179.85635 * 20 19 18 22 22 N 1.34430 * 108.07713 * 0.40023 * 21 20 19 23 23 H 0.96994 * 126.82421 * 179.79105 * 22 21 20 24 24 N 1.30710 * 125.52738 * 90.00120 * 19 18 17 25 25 C 1.39031 * 119.94608 * 0.02707 * 13 12 11 26 26 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.98162 * 0.02714 * 10 9 7 28 28 H 1.07997 * 119.79176 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.81907 * 179.97438 * 12 11 10 30 30 H 0.97003 * 120.00172 * 359.97438 * 16 14 13 31 31 H 1.08994 * 109.46706 * 300.00200 * 17 16 14 32 32 H 1.08998 * 109.46451 * 60.00116 * 17 16 14 33 33 H 1.09007 * 109.47911 * 299.99814 * 18 17 16 34 34 H 1.09001 * 109.47498 * 60.00599 * 18 17 16 35 35 H 1.08000 * 125.96037 * 180.12746 * 21 20 19 36 36 H 1.07998 * 120.20520 * 180.24657 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0497 -1.2341 -0.2836 9 6 1.3509 -2.4077 0.3732 10 6 1.8219 -3.6493 -0.0945 11 6 1.1796 -4.8118 0.2698 12 6 0.0704 -4.7699 1.0959 13 6 -0.4114 -3.5457 1.5712 14 6 -1.5971 -3.5096 2.4542 15 8 -2.0156 -2.4455 2.8666 16 7 -2.2137 -4.6565 2.8016 17 6 -3.3881 -4.6208 3.6768 18 6 -3.8918 -6.0461 3.9128 19 6 -5.1002 -6.0093 4.8125 20 7 -5.0774 -6.0800 6.1429 21 6 -6.2972 -6.0169 6.6116 22 7 -7.1396 -5.9115 5.5694 23 1 -8.1068 -5.8492 5.6077 24 7 -6.3410 -5.9086 4.4141 25 6 0.2255 -2.3629 1.2129 26 1 -0.4850 0.8400 -0.0004 27 1 2.6873 -3.6901 -0.7392 28 1 1.5445 -5.7621 -0.0909 29 1 -0.4262 -5.6874 1.3752 30 1 -1.8801 -5.5057 2.4722 31 1 -3.1168 -4.1683 4.6305 32 1 -4.1745 -4.0313 3.2055 33 1 -4.1633 -6.4983 2.9588 34 1 -3.1055 -6.6360 4.3838 35 1 -6.5785 -6.0489 7.6539 36 1 -0.1405 -1.4158 1.5807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345748576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:59 Heat of formation + Delta-G solvation = 61.828470 kcal Electronic energy + Delta-G solvation = -20768.418428 eV Core-core repulsion = 17446.744827 eV Total energy + Delta-G solvation = -3321.673601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.37455 -39.15745 -37.03915 -35.32096 -33.73342 -33.07517 -31.92904 -30.48269 -29.43843 -29.10661 -25.35154 -24.27193 -23.00056 -21.91809 -20.90287 -20.56152 -19.41960 -18.60025 -17.66953 -16.31505 -15.83909 -15.66389 -15.40869 -14.97690 -14.79589 -14.57952 -13.82787 -13.46714 -13.31945 -13.05148 -12.61417 -12.46251 -12.40901 -12.12697 -11.66005 -11.43725 -11.11951 -11.04045 -10.71509 -10.47842 -10.38274 -10.31337 -10.00286 -9.96137 -9.66241 -9.18130 -8.99618 -8.63714 -7.59758 -7.48827 -6.77045 -4.38469 1.31318 2.24720 2.36107 2.58736 2.85176 3.09747 3.11481 3.19322 3.55765 3.90597 3.95012 4.03180 4.42113 4.66811 4.69422 4.93675 5.16999 5.39482 5.63515 5.70965 5.89850 5.96266 6.04808 6.10323 6.17431 6.30754 6.70983 6.74676 6.86610 7.01619 7.04993 7.24117 7.41117 7.73207 7.78736 7.79002 7.95546 8.12274 8.22274 8.53435 8.83103 8.86545 8.98859 10.17843 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.003058 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.295352 B = 9155.000757 C = 9954.145041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.212 4.212 11 C -0.098 4.098 12 C -0.217 4.217 13 C -0.127 4.127 14 C 0.565 3.435 15 O -0.545 6.545 16 N -0.736 5.736 17 C 0.131 3.869 18 C -0.039 4.039 19 C 0.237 3.763 20 N -0.538 5.538 21 C 0.261 3.739 22 N -0.486 5.486 23 H 0.442 0.558 24 N -0.309 5.309 25 C -0.092 4.092 26 H 0.285 0.715 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.400 0.600 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.223 0.777 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 -10.872 9.652 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.232 4.232 11 C -0.116 4.116 12 C -0.237 4.237 13 C -0.130 4.130 14 C 0.356 3.644 15 O -0.423 6.423 16 N -0.391 5.391 17 C 0.006 3.994 18 C -0.079 4.079 19 C -0.046 4.046 20 N -0.266 5.266 21 C -0.038 4.038 22 N -0.204 5.204 23 H 0.287 0.713 24 N -0.139 5.139 25 C -0.112 4.112 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.236 0.764 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.240 0.760 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.607 -9.921 9.384 17.923 hybrid contribution -0.446 0.300 0.153 0.559 sum -12.054 -9.621 9.537 18.133 Atomic orbital electron populations 1.69786 1.07566 1.29865 1.33543 1.25964 0.94771 1.01528 0.92343 0.86325 0.80099 0.80130 0.79952 1.18993 1.20251 1.18720 1.19552 0.98139 0.91061 1.40220 0.90117 1.17598 0.91187 0.92463 0.89144 1.21101 1.03514 0.92801 1.05740 1.20436 0.96075 0.96726 0.98403 1.20345 1.01365 0.94640 1.07379 1.19457 0.96547 0.95353 1.01689 1.18831 0.83216 0.82729 0.79671 1.90702 1.66287 1.29989 1.55346 1.45868 1.31093 1.09984 1.52138 1.21049 0.88493 0.94632 0.95230 1.20124 0.91574 0.98679 0.97533 1.24013 0.93054 0.97379 0.90141 1.70450 1.22174 1.24340 1.09680 1.26140 0.85508 0.95844 0.96338 1.48147 1.10937 1.56860 1.04495 0.71296 1.78064 1.03249 1.26243 1.06309 1.21622 0.96457 0.96427 0.96691 0.90396 0.88634 0.88882 0.89126 0.76447 0.91251 0.91571 0.88659 0.88145 0.76049 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.02 10.98 55.55 0.61 -20.41 16 2 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.99 29.59 -169.99 -5.03 13.96 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.21 9.05 -37.73 -0.34 -12.55 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 9 C 0.10 2.63 5.57 -106.87 -0.60 2.04 16 10 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 11 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 12 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.65 16 14 C 0.56 12.62 7.77 -12.32 -0.10 12.53 16 15 O -0.55 -14.10 16.33 5.32 0.09 -14.01 16 16 N -0.74 -12.34 5.51 -61.24 -0.34 -12.68 16 17 C 0.13 1.95 5.66 -4.04 -0.02 1.93 16 18 C -0.04 -0.44 5.96 -27.88 -0.17 -0.61 16 19 C 0.24 2.94 7.39 -156.85 -1.16 1.78 16 20 N -0.54 -6.27 11.19 -11.97 -0.13 -6.41 16 21 C 0.26 1.93 13.13 -90.66 -1.19 0.74 16 22 N -0.49 -3.74 7.45 29.53 0.22 -3.52 16 23 H 0.44 1.64 8.96 -182.34 -1.63 0.00 16 24 N -0.31 -3.74 12.80 32.42 0.41 -3.32 16 25 C -0.09 -2.48 8.23 -38.44 -0.32 -2.80 16 26 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 27 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 28 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.09 1.54 6.38 -52.49 -0.33 1.21 16 30 H 0.40 5.58 6.49 -40.82 -0.26 5.32 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.22 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.13 3.88 5.77 -52.49 -0.30 3.58 16 LS Contribution 318.80 15.07 4.80 4.80 Total: -1.00 -34.52 318.80 -10.15 -44.68 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.05 Total: 8.56 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -5.74 Total: -11.66 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.77 Total: -46.33 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.52 -10.15 -44.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345748576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.506 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds