Wall clock time and date at job start Tue Mar 31 2020 03:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 120.00496 * 2 1 4 4 O 1.21283 * 119.99968 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00241 * 179.97438 * 3 2 1 6 6 H 1.08995 * 110.05646 * 301.41751 * 5 3 2 7 7 C 1.54264 * 110.02729 * 62.83770 * 5 3 2 8 8 C 1.54889 * 104.19428 * 142.89553 * 7 5 3 9 9 C 1.54889 * 102.75028 * 322.05561 * 8 7 5 10 10 C 1.53877 * 110.03044 * 180.02562 * 5 3 2 11 11 H 1.08997 * 110.03504 * 0.04930 * 10 5 3 12 12 N 1.46496 * 110.03082 * 121.43132 * 10 5 3 13 13 C 1.34777 * 120.00271 * 204.99607 * 12 10 5 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 10 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 10 16 16 S 1.81002 * 109.47178 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00092 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99810 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00234 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99664 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47114 * 120.00091 * 21 19 17 24 24 H 1.48505 * 109.46890 * 239.99700 * 21 19 17 25 25 H 1.09002 * 109.47249 * 300.00153 * 1 2 3 26 26 H 1.09007 * 109.46913 * 59.99926 * 1 2 3 27 27 H 1.08992 * 109.47400 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99727 * 180.02562 * 2 1 3 29 29 H 1.09002 * 110.48017 * 261.56616 * 7 5 3 30 30 H 1.08992 * 110.49009 * 24.21310 * 7 5 3 31 31 H 1.09002 * 110.75964 * 80.36474 * 8 7 5 32 32 H 1.09000 * 110.75705 * 203.74117 * 8 7 5 33 33 H 1.09008 * 110.48493 * 279.26804 * 9 8 7 34 34 H 1.09000 * 110.49326 * 156.62381 * 9 8 7 35 35 H 0.97005 * 120.00266 * 25.00190 * 12 10 5 36 36 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 37 37 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 38 38 H 0.97005 * 119.99806 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1670 0.0006 6 1 4.0194 0.6335 0.8746 7 6 4.1747 0.5051 -1.2886 8 6 5.4302 1.3352 -1.6544 9 6 5.0040 2.7787 -1.2887 10 6 4.1731 2.6127 0.0011 11 1 3.3390 3.3143 0.0018 12 7 5.0188 2.8380 1.1759 13 6 5.1755 4.0843 1.6645 14 8 4.6159 5.0192 1.1319 15 6 6.0460 4.3161 2.8726 16 16 6.0538 6.0794 3.2813 17 6 7.1162 6.0630 4.6869 18 1 7.5375 5.1313 5.0346 19 6 7.4125 7.2476 5.3466 20 7 6.9003 8.3834 4.9219 21 14 8.5394 7.2304 6.8363 22 1 8.9800 5.8385 7.1076 23 1 9.7259 8.0825 6.5694 24 1 7.8076 7.7564 8.0166 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9499 -0.8401 -0.0004 29 1 4.4459 -0.5337 -1.1003 30 1 3.4309 0.5683 -2.0827 31 1 6.2873 1.0228 -1.0579 32 1 5.6494 1.2553 -2.7191 33 1 4.3939 3.2092 -2.0829 34 1 5.8801 3.3992 -1.1006 35 1 5.4662 2.0902 1.6021 36 1 7.0628 3.9885 2.6561 37 1 5.6538 3.7495 3.7172 38 1 7.1071 9.2112 5.3833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345880624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:45 Heat of formation + Delta-G solvation = -116.696602 kcal Electronic energy + Delta-G solvation = -20210.314447 eV Core-core repulsion = 16984.050618 eV Total energy + Delta-G solvation = -3226.263829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.60494 -40.35043 -38.25678 -35.71716 -34.65058 -34.56341 -31.12189 -30.81553 -28.26292 -27.60822 -27.28072 -22.95351 -22.37634 -21.11263 -20.93474 -19.85988 -18.65204 -17.83546 -17.43268 -16.88585 -16.67736 -16.54494 -16.31659 -15.93989 -15.59283 -15.29194 -14.66601 -14.56784 -14.44538 -13.89680 -13.66933 -13.27409 -13.16261 -13.10619 -12.91889 -12.67526 -12.60668 -12.46668 -12.01959 -11.91880 -11.70424 -11.63617 -11.16030 -10.99615 -10.83683 -10.26628 -10.16951 -10.09976 -8.67760 -8.34551 -6.13338 1.26460 1.41896 1.46919 1.56756 1.58296 1.61956 2.08531 2.27222 2.43523 2.99558 3.29115 3.34510 3.56845 3.84267 3.99989 4.14168 4.29375 4.34650 4.37655 4.44389 4.49089 4.52705 4.60249 4.66144 4.74024 4.94219 4.94508 5.05173 5.19778 5.22944 5.38423 5.41793 5.43450 5.55645 6.20049 6.49877 6.55612 7.06359 7.24145 7.28826 8.75106 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.028187 B = 0.003232 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.118353 B = 8660.468744 C = 9007.196589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.716 5.716 3 C 0.510 3.490 4 O -0.589 6.589 5 C -0.110 4.110 6 H 0.138 0.862 7 C -0.100 4.100 8 C -0.112 4.112 9 C -0.137 4.137 10 C 0.140 3.860 11 H 0.065 0.935 12 N -0.703 5.703 13 C 0.531 3.469 14 O -0.568 6.568 15 C -0.126 4.126 16 S -0.158 6.158 17 C -0.544 4.544 18 H 0.085 0.915 19 C 0.010 3.990 20 N -0.913 5.913 21 Si 1.002 2.998 22 H -0.254 1.254 23 H -0.274 1.274 24 H -0.275 1.275 25 H 0.041 0.959 26 H 0.047 0.953 27 H 0.116 0.884 28 H 0.422 0.578 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.417 0.583 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 -27.574 -11.473 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.368 5.368 3 C 0.297 3.703 4 O -0.469 6.469 5 C -0.132 4.132 6 H 0.155 0.845 7 C -0.138 4.138 8 C -0.150 4.150 9 C -0.176 4.176 10 C 0.035 3.965 11 H 0.083 0.917 12 N -0.357 5.357 13 C 0.317 3.683 14 O -0.446 6.446 15 C -0.277 4.277 16 S 0.069 5.931 17 C -0.691 4.691 18 H 0.103 0.897 19 C -0.194 4.194 20 N -0.550 5.550 21 Si 0.824 3.176 22 H -0.178 1.178 23 H -0.199 1.199 24 H -0.200 1.200 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.135 0.865 28 H 0.260 0.740 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.189 -25.155 -12.344 28.696 hybrid contribution 1.180 -0.674 1.617 2.112 sum -5.009 -25.829 -10.727 28.413 Atomic orbital electron populations 1.21668 0.79147 1.04334 1.01074 1.45630 1.08128 1.08429 1.74610 1.20943 0.90946 0.83655 0.74747 1.90751 1.71271 1.33585 1.51318 1.22198 0.90556 0.96155 1.04313 0.84455 1.22395 0.97134 1.00863 0.93425 1.22510 0.98020 0.91752 1.02698 1.22774 0.99180 0.99612 0.96013 1.21545 0.93046 0.96637 0.85262 0.91706 1.45785 1.50524 1.08101 1.31285 1.20175 0.80638 0.83320 0.84211 1.90704 1.48923 1.43666 1.61262 1.23358 1.03111 1.02382 0.98864 1.85698 1.64940 1.03755 1.38738 1.23236 1.33466 0.97324 1.15122 0.89716 1.26185 0.97907 0.93947 1.01366 1.70208 1.44035 0.99201 1.41508 0.84857 0.77233 0.79109 0.76422 1.17794 1.19898 1.20025 0.93987 0.93429 0.86533 0.74018 0.86172 0.91148 0.89477 0.89642 0.91893 0.92713 0.74510 0.86750 0.87215 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.70 127.77 1.37 2.34 16 2 N -0.72 -8.63 5.66 -484.53 -2.74 -11.38 16 3 C 0.51 10.91 6.99 87.66 0.61 11.52 16 4 O -0.59 -20.31 15.21 -3.04 -0.05 -20.35 16 5 C -0.11 -1.72 3.06 -10.81 -0.03 -1.76 16 6 H 0.14 1.28 7.62 -2.39 -0.02 1.26 16 7 C -0.10 -0.87 6.31 31.67 0.20 -0.67 16 8 C -0.11 -1.37 6.91 31.89 0.22 -1.15 16 9 C -0.14 -3.17 6.54 31.69 0.21 -2.97 16 10 C 0.14 3.71 2.85 45.74 0.13 3.84 16 11 H 0.06 2.47 5.81 -2.39 -0.01 2.46 16 12 N -0.70 -18.99 5.03 -439.02 -2.21 -21.20 16 13 C 0.53 21.10 7.84 87.66 0.69 21.79 16 14 O -0.57 -28.99 15.52 -3.02 -0.05 -29.04 16 15 C -0.13 -5.16 6.16 71.24 0.44 -4.73 16 16 S -0.16 -9.13 20.57 -56.49 -1.16 -10.29 16 17 C -0.54 -31.61 9.50 67.95 0.65 -30.96 16 18 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 19 C 0.01 0.60 5.49 84.86 0.47 1.07 16 20 N -0.91 -57.34 13.22 21.65 0.29 -57.05 16 21 Si 1.00 44.17 29.55 68.60 2.03 46.19 16 22 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.42 1.44 8.83 -92.71 -0.82 0.62 16 29 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.07 0.70 7.85 -2.39 -0.02 0.68 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.05 1.50 8.04 -2.39 -0.02 1.48 16 35 H 0.42 7.40 8.32 -92.70 -0.77 6.63 16 36 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 37 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 38 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -91.28 334.30 0.54 -90.74 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -0.51 Total: 14.04 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 4.94 Total: -1.67 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -4.66 Total: -89.63 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.09 Total: -49.39 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.16 Total: -10.29 kcal Total: -91.28 0.54 -90.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345880624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.958 kcal (2) G-P(sol) polarization free energy of solvation -91.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds