Wall clock time and date at job start Tue Mar 31 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34426 * 126.82145 * 2 1 4 4 N 1.30831 * 108.07660 * 179.97438 * 3 2 1 5 5 C 1.33242 * 109.83180 * 359.97438 * 4 3 2 6 6 C 1.50697 * 125.53073 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.46745 * 90.02629 * 6 5 4 8 8 C 1.34774 * 120.00111 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99814 * 0.02562 * 8 7 6 10 10 C 1.47883 * 120.00509 * 180.02562 * 8 7 6 11 11 C 1.39918 * 120.02268 * 359.73155 * 10 8 7 12 12 C 1.38330 * 120.35798 * 179.74186 * 11 10 8 13 13 C 1.37748 * 120.41062 * 0.55248 * 12 11 10 14 14 C 1.40754 * 120.04194 * 359.70420 * 13 12 11 15 15 C 1.41437 * 120.18017 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00090 * 150.17259 * 15 14 13 17 17 C 1.39935 * 119.99635 * 330.17244 * 15 14 13 18 18 N 1.30831 * 119.99551 * 161.73022 * 17 15 14 19 19 Si 1.86798 * 120.00414 * 341.73451 * 17 15 14 20 20 H 1.48494 * 109.47514 * 95.41211 * 19 17 15 21 21 H 1.48496 * 109.47211 * 215.41447 * 19 17 15 22 22 H 1.48506 * 109.46918 * 335.40997 * 19 17 15 23 23 C 1.38993 * 120.02972 * 180.02562 * 10 8 7 24 24 N 1.30713 * 108.94249 * 0.26872 * 5 4 3 25 25 H 1.08998 * 109.46795 * 90.00768 * 1 2 3 26 26 H 1.09004 * 109.47188 * 210.00376 * 1 2 3 27 27 H 1.09003 * 109.47378 * 330.00713 * 1 2 3 28 28 H 1.07998 * 125.96276 * 359.96725 * 3 2 1 29 29 H 1.09006 * 109.46872 * 330.03294 * 6 5 4 30 30 H 1.08991 * 109.47141 * 210.03090 * 6 5 4 31 31 H 0.96999 * 120.00229 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.82221 * 0.02562 * 11 10 8 33 33 H 1.07999 * 119.79194 * 180.25527 * 12 11 10 34 34 H 1.08003 * 119.98323 * 179.72153 * 13 12 11 35 35 H 0.97002 * 119.99799 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.20010 * 359.95805 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2707 1.0761 0.0000 4 7 3.5096 0.6557 0.0006 5 6 3.5348 -0.6765 0.0015 6 6 4.7776 -1.5289 0.0029 7 7 5.1790 -1.8046 1.3846 8 6 6.2712 -2.5544 1.6322 9 8 6.9235 -3.0014 0.7091 10 6 6.6761 -2.8332 3.0269 11 6 5.9289 -2.3142 4.0899 12 6 6.2983 -2.5751 5.3972 13 6 7.4121 -3.3391 5.6678 14 6 8.1792 -3.8654 4.6115 15 6 9.3231 -4.6507 4.8860 16 1 9.6265 -5.4229 4.1948 17 6 10.0616 -4.4269 6.0534 18 7 10.8810 -5.3461 6.4952 19 14 9.8774 -2.8159 6.9809 20 1 8.8865 -2.9845 8.0739 21 1 11.1886 -2.4240 7.5575 22 1 9.4109 -1.7585 6.0484 23 6 7.8027 -3.6060 3.2829 24 7 2.3068 -1.1242 -0.0043 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8901 0.5137 28 1 1.9510 2.1077 -0.0005 29 1 5.5811 -1.0004 -0.5103 30 1 4.5744 -2.4684 -0.5109 31 1 4.6583 -1.4482 2.1213 32 1 5.0563 -1.7104 3.8887 33 1 5.7125 -2.1733 6.2107 34 1 7.6968 -3.5348 6.6911 35 1 11.3933 -5.1909 7.3042 36 1 8.3848 -4.0053 2.4654 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351873455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:28 Heat of formation + Delta-G solvation = 53.872399 kcal Electronic energy + Delta-G solvation = -20899.271651 eV Core-core repulsion = 17577.253048 eV Total energy + Delta-G solvation = -3322.018602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.17197 -41.01785 -39.09192 -36.42627 -35.58140 -34.72481 -32.79653 -32.24171 -31.78433 -29.46859 -27.32864 -26.75200 -24.48151 -23.05439 -22.51259 -21.80458 -21.65797 -19.71958 -18.27571 -17.82545 -17.51358 -17.14094 -16.71057 -16.56779 -16.43471 -15.76973 -15.48618 -15.28639 -14.60746 -14.51132 -14.38061 -14.04792 -13.97357 -13.77931 -13.71142 -13.33508 -12.84258 -12.73591 -12.68057 -12.31963 -11.77127 -11.57814 -11.27044 -11.12694 -10.99886 -10.90664 -10.54382 -10.31534 -9.64127 -9.57831 -8.91438 -6.55209 0.15490 0.48105 0.73353 1.26146 1.37391 1.42257 1.49417 1.57889 1.91856 2.13266 2.37178 2.64354 2.99947 3.43196 3.47047 3.81660 3.97661 4.21835 4.24280 4.38469 4.43839 4.45566 4.59851 4.65704 4.73188 4.87469 4.90413 5.10353 5.13454 5.21020 5.24699 5.41480 5.63128 5.70284 5.84016 5.89366 6.08320 6.29104 6.44726 6.65156 6.74128 7.00431 7.12294 8.17516 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.033480 B = 0.003182 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.126538 B = 8796.758287 C = 9196.590199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.380 5.380 3 C 0.266 3.734 4 N -0.567 5.567 5 C 0.199 3.801 6 C 0.220 3.780 7 N -0.705 5.705 8 C 0.568 3.432 9 O -0.578 6.578 10 C -0.111 4.111 11 C -0.184 4.184 12 C -0.081 4.081 13 C -0.224 4.224 14 C 0.066 3.934 15 C -0.487 4.487 16 H 0.052 0.948 17 C 0.046 3.954 18 N -0.848 5.848 19 Si 0.967 3.033 20 H -0.246 1.246 21 H -0.277 1.277 22 H -0.252 1.252 23 C -0.162 4.162 24 N -0.328 5.328 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.133 0.867 28 H 0.272 0.728 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.411 0.589 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.108 0.892 35 H 0.295 0.705 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.083 16.631 -6.990 29.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.170 5.170 3 C -0.030 4.030 4 N -0.296 5.296 5 C -0.084 4.084 6 C 0.095 3.905 7 N -0.359 5.359 8 C 0.358 3.642 9 O -0.459 6.459 10 C -0.115 4.115 11 C -0.204 4.204 12 C -0.099 4.099 13 C -0.244 4.244 14 C 0.064 3.936 15 C -0.516 4.516 16 H 0.070 0.930 17 C -0.169 4.169 18 N -0.474 5.474 19 Si 0.789 3.211 20 H -0.171 1.171 21 H -0.204 1.204 22 H -0.175 1.175 23 C -0.183 4.183 24 N -0.159 5.159 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.151 0.849 28 H 0.288 0.712 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.248 0.752 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.472 15.634 -7.538 28.394 hybrid contribution 0.220 0.080 0.443 0.502 sum -22.252 15.714 -7.095 28.150 Atomic orbital electron populations 1.22432 0.70569 1.06872 1.05490 1.50760 1.09711 1.03449 1.53125 1.27033 0.84381 0.97207 0.94341 1.70398 1.23169 1.10451 1.25558 1.23796 0.93134 0.90374 1.01076 1.19263 0.90077 0.97242 0.83947 1.45600 1.28469 1.53227 1.08614 1.18532 0.79658 0.77086 0.88931 1.90699 1.54893 1.53315 1.46974 1.19617 0.97736 1.02105 0.91999 1.20927 1.02049 1.05866 0.91553 1.21007 0.95544 0.96362 0.96984 1.21391 0.98626 1.06631 0.97724 1.17776 0.92901 0.91115 0.91829 1.19460 1.10013 1.16608 1.05533 0.93018 1.26899 0.92820 1.01007 0.96175 1.69725 1.21910 1.34522 1.21228 0.85475 0.78043 0.78538 0.79070 1.17092 1.20357 1.17538 1.21209 0.98501 1.02692 0.95887 1.78005 1.01808 1.10284 1.25809 0.88643 0.89297 0.84880 0.71222 0.89032 0.89455 0.75158 0.84255 0.83565 0.87419 0.89404 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 11.53 127.77 1.47 1.75 16 2 N -0.38 -5.29 4.04 -373.61 -1.51 -6.80 16 3 C 0.27 3.35 12.66 180.36 2.28 5.63 16 4 N -0.57 -12.68 11.19 -191.81 -2.15 -14.83 16 5 C 0.20 4.99 7.51 138.63 1.04 6.03 16 6 C 0.22 6.20 6.30 85.63 0.54 6.74 16 7 N -0.71 -21.81 5.50 -469.68 -2.58 -24.40 16 8 C 0.57 22.83 7.77 86.80 0.67 23.50 16 9 O -0.58 -27.09 16.33 -3.87 -0.06 -27.15 16 10 C -0.11 -4.79 5.87 -20.14 -0.12 -4.91 16 11 C -0.18 -6.65 9.55 22.70 0.22 -6.44 16 12 C -0.08 -3.03 10.01 22.18 0.22 -2.81 16 13 C -0.22 -10.23 7.17 22.77 0.16 -10.07 16 14 C 0.07 3.48 5.10 -21.32 -0.11 3.37 16 15 C -0.49 -28.28 9.57 23.47 0.22 -28.05 16 16 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 17 C 0.05 2.47 5.40 85.25 0.46 2.94 16 18 N -0.85 -47.16 13.93 21.82 0.30 -46.85 16 19 Si 0.97 42.11 24.52 68.60 1.68 43.79 16 20 H -0.25 -9.73 6.71 99.48 0.67 -9.06 16 21 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.25 -11.20 6.87 99.48 0.68 -10.51 16 23 C -0.16 -8.26 9.34 23.01 0.21 -8.04 16 24 N -0.33 -7.70 12.70 -51.34 -0.65 -8.36 16 25 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 27 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.27 0.09 8.06 -2.91 -0.02 0.07 16 29 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.41 11.03 6.48 -92.71 -0.60 10.43 16 32 H 0.14 3.81 6.38 -2.91 -0.02 3.80 16 33 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.11 4.79 4.72 -2.91 -0.01 4.78 16 35 H 0.30 14.63 8.30 -92.71 -0.77 13.86 16 36 H 0.09 5.05 7.64 -2.91 -0.02 5.02 16 Total: -1.00 -77.66 315.04 2.79 -74.88 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.46 Total: 20.06 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 7.29 Total: -10.34 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -6.58 Total: -101.24 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.06 Total: -27.15 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.68 Total: 43.79 kcal Total: -77.66 2.79 -74.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351873455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.749 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds