Wall clock time and date at job start Tue Mar 31 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00124 * 2 1 4 4 H 1.48497 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46684 * 299.99746 * 3 2 1 6 6 H 1.48502 * 109.46990 * 59.99819 * 3 2 1 7 7 C 1.37873 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00466 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47165 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99902 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99921 * 180.02562 * 11 10 9 14 14 C 1.38783 * 120.00002 * 180.02562 * 13 11 10 15 15 N 1.31522 * 125.98653 * 180.02562 * 14 13 11 16 16 C 1.33744 * 109.66655 * 179.97438 * 15 14 13 17 17 S 1.76202 * 125.53670 * 180.02562 * 16 15 14 18 18 C 1.81402 * 102.99913 * 180.02562 * 17 16 15 19 19 C 1.52991 * 109.47125 * 180.02562 * 18 17 16 20 20 O 1.42905 * 109.47247 * 180.02562 * 19 18 17 21 21 N 1.31187 * 108.92126 * 0.02562 * 16 15 14 22 22 N 1.34870 * 125.98402 * 359.97438 * 14 13 11 23 23 H 0.96997 * 126.77131 * 0.02562 * 22 14 13 24 24 H 0.96998 * 119.99760 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47013 * 60.00020 * 9 7 2 26 26 H 1.08995 * 109.47322 * 299.99625 * 9 7 2 27 27 H 1.09003 * 109.47232 * 59.99815 * 10 9 7 28 28 H 1.08998 * 109.47558 * 300.00211 * 10 9 7 29 29 H 0.97003 * 120.00084 * 0.02562 * 13 11 10 30 30 H 1.09002 * 109.46713 * 299.99991 * 18 17 16 31 31 H 1.09000 * 109.47070 * 59.99983 * 18 17 16 32 32 H 1.09002 * 109.47302 * 299.99611 * 19 18 17 33 33 H 1.09006 * 109.47479 * 59.99704 * 19 18 17 34 34 H 0.96705 * 113.99919 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2790 -4.9671 0.0011 13 7 2.1656 -6.1343 0.0018 14 6 1.4717 -7.3362 0.0018 15 7 2.0069 -8.5376 0.0029 16 6 1.0397 -9.4613 0.0031 17 16 1.2893 -11.2055 0.0051 18 6 -0.4026 -11.8599 0.0038 19 6 -0.3580 -13.3891 0.0059 20 8 -1.6908 -13.9046 0.0043 21 7 -0.1250 -8.8576 0.0017 22 7 0.1303 -7.4768 0.0018 23 1 -0.5282 -6.7646 0.0014 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 3.1356 -6.1343 0.0022 30 1 -0.9278 -11.5108 0.8928 31 1 -0.9258 -11.5125 -0.8872 32 1 0.1673 -13.7386 -0.8829 33 1 0.1651 -13.7362 0.8971 34 1 -1.7390 -14.8705 0.0051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360367377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:42 Heat of formation + Delta-G solvation = -6.299553 kcal Electronic energy + Delta-G solvation = -18995.816929 eV Core-core repulsion = 15670.799932 eV Total energy + Delta-G solvation = -3325.016997 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.27432 -39.79751 -37.43226 -35.19891 -33.78129 -32.52535 -31.63020 -31.34011 -30.18998 -26.20218 -23.86531 -23.61758 -22.39107 -21.43344 -20.35747 -18.28683 -18.17765 -17.47366 -16.68911 -16.44689 -16.34943 -15.96722 -15.87142 -15.07959 -14.81807 -14.55614 -13.95599 -13.57628 -13.12969 -12.85914 -12.36501 -12.35469 -12.04834 -11.50612 -11.44357 -11.06794 -10.98009 -10.72037 -10.66751 -10.49894 -10.31711 -10.23242 -10.10676 -9.70598 -9.27949 -9.11934 -8.47841 -7.96262 -6.11344 -4.16913 0.75457 1.36516 1.73106 2.16479 2.24975 2.93681 3.23404 3.24344 3.32470 3.35044 3.91655 4.35211 4.46499 4.51135 4.60371 4.88477 4.92232 5.24199 5.24646 5.38100 5.46144 5.77979 5.85662 5.86018 6.10516 6.49741 6.88639 7.11486 7.17368 7.54240 7.58930 7.83754 7.86672 7.88033 8.21710 8.90248 9.48208 10.99491 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.065597 B = 0.002375 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.744800 B =11786.089576 C =12181.783509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.035 3.965 10 C -0.123 4.123 11 C 0.522 3.478 12 O -0.516 6.516 13 N -0.635 5.635 14 C 0.522 3.478 15 N -0.543 5.543 16 C 0.220 3.780 17 S 0.041 5.959 18 C -0.125 4.125 19 C 0.095 3.905 20 O -0.568 6.568 21 N -0.316 5.316 22 N -0.464 5.464 23 H 0.455 0.545 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.435 0.565 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -24.468 0.010 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.163 4.163 11 C 0.313 3.687 12 O -0.387 6.387 13 N -0.291 5.291 14 C 0.154 3.846 15 N -0.282 5.282 16 C -0.172 4.172 17 S 0.266 5.734 18 C -0.275 4.275 19 C 0.016 3.984 20 O -0.374 6.374 21 N -0.154 5.154 22 N -0.195 5.195 23 H 0.310 0.690 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.275 0.725 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 3.223 -24.579 0.011 24.789 hybrid contribution -0.423 1.840 -0.002 1.888 sum 2.800 -22.739 0.009 22.911 Atomic orbital electron populations 1.69990 1.06116 1.26795 1.49737 1.25028 0.94865 0.99435 0.95009 0.86486 0.79995 0.83518 0.77685 1.19633 1.20936 1.20940 1.21173 0.93082 0.90622 1.52052 0.92230 1.18986 0.93091 0.89243 0.98973 1.22005 1.01041 0.89241 1.04000 1.22401 0.88709 0.85068 0.72550 1.90507 1.14761 1.86226 1.47212 1.43365 1.11861 1.00704 1.73156 1.20498 0.81928 0.88156 0.94008 1.70629 1.30869 0.94903 1.31800 1.25450 0.88947 1.00628 1.02126 1.85150 1.07847 0.87209 1.93157 1.23497 0.97708 0.98045 1.08203 1.21637 0.84438 0.91163 1.01190 1.86479 1.26622 1.26541 1.97780 1.78356 1.20340 0.86432 1.30230 1.48352 1.06185 1.06968 1.57975 0.68995 0.92812 0.95521 0.95512 0.88661 0.88651 0.72545 0.88089 0.88084 0.92311 0.92300 0.76647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.01 9.11 -34.44 -0.31 -14.32 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 10 C -0.12 -2.10 5.64 -27.88 -0.16 -2.26 16 11 C 0.52 8.55 7.79 -10.99 -0.09 8.47 16 12 O -0.52 -10.14 13.51 5.56 0.08 -10.06 16 13 N -0.64 -8.48 5.40 -12.75 -0.07 -8.54 16 14 C 0.52 8.09 8.83 -320.36 -2.83 5.26 16 15 N -0.54 -8.42 11.25 -14.10 -0.16 -8.58 16 16 C 0.22 3.28 8.27 -90.97 -0.75 2.53 16 17 S 0.04 0.44 22.16 -107.50 -2.38 -1.95 16 18 C -0.13 -1.16 5.92 37.15 0.22 -0.94 16 19 C 0.10 0.62 7.05 37.15 0.26 0.89 16 20 O -0.57 -4.11 13.66 -35.23 -0.48 -4.60 16 21 N -0.32 -5.03 12.34 30.13 0.37 -4.66 16 22 N -0.46 -7.56 7.04 30.09 0.21 -7.34 16 23 H 0.45 7.51 6.47 -182.36 -1.18 6.33 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.43 4.28 8.82 -40.82 -0.36 3.92 16 30 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 31 H 0.10 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.39 0.86 9.12 45.56 0.42 1.27 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -33.77 317.35 -9.85 -43.62 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.04 Total: 5.12 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -3.87 Total: 1.87 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 1.09 Total: -54.51 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.41 Total: -14.66 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -2.38 Total: -1.95 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.77 -9.85 -43.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360367377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.316 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds