Wall clock time and date at job start Tue Mar 31 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00124 * 2 1 4 4 H 1.48497 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46684 * 299.99746 * 3 2 1 6 6 H 1.48502 * 109.46990 * 59.99819 * 3 2 1 7 7 C 1.37873 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00466 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47165 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99902 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99921 * 180.02562 * 11 10 9 14 14 C 1.38783 * 120.00002 * 180.02562 * 13 11 10 15 15 N 1.31522 * 125.98653 * 180.02562 * 14 13 11 16 16 C 1.33744 * 109.66655 * 179.97438 * 15 14 13 17 17 S 1.76202 * 125.53670 * 180.02562 * 16 15 14 18 18 C 1.81402 * 102.99913 * 180.02562 * 17 16 15 19 19 C 1.52991 * 109.47125 * 180.02562 * 18 17 16 20 20 O 1.42905 * 109.47247 * 180.02562 * 19 18 17 21 21 N 1.31187 * 108.92126 * 0.02562 * 16 15 14 22 22 N 1.34870 * 125.98402 * 359.97438 * 14 13 11 23 23 H 0.96997 * 126.77131 * 0.02562 * 22 14 13 24 24 H 0.96998 * 119.99760 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47013 * 60.00020 * 9 7 2 26 26 H 1.08995 * 109.47322 * 299.99625 * 9 7 2 27 27 H 1.09003 * 109.47232 * 59.99815 * 10 9 7 28 28 H 1.08998 * 109.47558 * 300.00211 * 10 9 7 29 29 H 0.97003 * 120.00084 * 0.02562 * 13 11 10 30 30 H 1.09002 * 109.46713 * 299.99991 * 18 17 16 31 31 H 1.09000 * 109.47070 * 59.99983 * 18 17 16 32 32 H 1.09002 * 109.47302 * 299.99611 * 19 18 17 33 33 H 1.09006 * 109.47479 * 59.99704 * 19 18 17 34 34 H 0.96705 * 113.99919 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 8 0.2790 -4.9671 0.0011 13 7 2.1656 -6.1343 0.0018 14 6 1.4717 -7.3362 0.0018 15 7 2.0069 -8.5376 0.0029 16 6 1.0397 -9.4613 0.0031 17 16 1.2893 -11.2055 0.0051 18 6 -0.4026 -11.8599 0.0038 19 6 -0.3580 -13.3891 0.0059 20 8 -1.6908 -13.9046 0.0043 21 7 -0.1250 -8.8576 0.0017 22 7 0.1303 -7.4768 0.0018 23 1 -0.5282 -6.7646 0.0014 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 3.1356 -6.1343 0.0022 30 1 -0.9278 -11.5108 0.8928 31 1 -0.9258 -11.5125 -0.8872 32 1 0.1673 -13.7386 -0.8829 33 1 0.1651 -13.7362 0.8971 34 1 -1.7390 -14.8705 0.0051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360367377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:42 Heat of formation + Delta-G solvation = -30.976506 kcal Electronic energy + Delta-G solvation = -18996.887002 eV Core-core repulsion = 15670.799932 eV Total energy + Delta-G solvation = -3326.087070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.47160 -41.14434 -37.94320 -36.48841 -35.67122 -33.76547 -33.20479 -32.20678 -31.43408 -27.99660 -25.13941 -24.62130 -23.62630 -22.70423 -21.81009 -19.52072 -19.01635 -18.71655 -17.98302 -17.85381 -17.56373 -17.19066 -16.65918 -16.46712 -16.34542 -15.53253 -15.41549 -14.51303 -14.40392 -14.24254 -13.75706 -13.56110 -13.33011 -12.89722 -12.73252 -12.62698 -12.47872 -11.99469 -11.93610 -11.84019 -11.73168 -11.47647 -11.33001 -11.21246 -10.97865 -10.58672 -10.30736 -8.88234 -8.19881 -6.32518 -0.16914 0.13778 0.72758 1.01038 1.09689 1.43883 1.44533 1.57262 1.70138 1.98639 2.42582 3.15135 3.41739 3.43868 3.58267 3.82165 4.05159 4.21305 4.37368 4.39034 4.48423 4.55122 4.67759 4.78040 4.92530 4.98674 5.50094 5.58987 5.73843 5.82746 5.93131 6.13934 6.58139 6.71257 6.87494 6.88120 7.38182 8.92570 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.065597 B = 0.002375 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.744800 B =11786.089576 C =12181.783509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.251 1.251 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.037 3.963 10 C -0.109 4.109 11 C 0.530 3.470 12 O -0.554 6.554 13 N -0.611 5.611 14 C 0.515 3.485 15 N -0.546 5.546 16 C 0.206 3.794 17 S 0.077 5.923 18 C -0.126 4.126 19 C 0.099 3.901 20 O -0.590 6.590 21 N -0.334 5.334 22 N -0.476 5.476 23 H 0.451 0.549 24 H 0.262 0.738 25 H -0.011 1.011 26 H -0.010 1.010 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.453 0.547 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.273 -25.657 0.012 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.174 1.174 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.577 4.577 8 H 0.099 0.901 9 C -0.001 4.001 10 C -0.148 4.148 11 C 0.321 3.679 12 O -0.428 6.428 13 N -0.268 5.268 14 C 0.147 3.853 15 N -0.285 5.285 16 C -0.185 4.185 17 S 0.303 5.697 18 C -0.276 4.276 19 C 0.019 3.981 20 O -0.400 6.400 21 N -0.172 5.172 22 N -0.206 5.206 23 H 0.305 0.695 24 H 0.070 0.930 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.297 0.703 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.815 -25.822 0.013 26.468 hybrid contribution -1.242 2.067 -0.002 2.412 sum 4.573 -23.755 0.010 24.191 Atomic orbital electron populations 1.70157 1.08202 1.27697 1.51640 1.26072 0.95663 1.03821 0.94843 0.85331 0.79525 0.78461 0.77287 1.17410 1.21015 1.21026 1.21728 0.94256 0.91310 1.50394 0.90087 1.18779 0.93787 0.92068 0.95475 1.21752 0.99445 0.86719 1.06934 1.22160 0.88008 0.85670 0.72050 1.90516 1.16473 1.86779 1.49028 1.42968 1.12525 0.99299 1.71980 1.20694 0.81870 0.88690 0.94031 1.70668 1.30932 0.94881 1.32066 1.26298 0.88497 1.02623 1.01054 1.84999 1.08526 0.83934 1.92256 1.23585 0.96685 1.00219 1.07098 1.21649 0.84595 0.88956 1.02868 1.86420 1.26995 1.28733 1.97878 1.78343 1.21139 0.86293 1.31388 1.48386 1.06532 1.07182 1.58499 0.69461 0.92952 0.99212 0.99205 0.85646 0.85637 0.70306 0.89214 0.89210 0.90597 0.90585 0.74174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.29 21.45 0.28 -56.42 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 42.29 29.54 68.60 2.03 44.31 16 4 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.54 -28.12 9.11 25.60 0.23 -27.89 16 8 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.04 1.81 4.26 29.85 0.13 1.93 16 10 C -0.11 -3.55 5.64 29.85 0.17 -3.38 16 11 C 0.53 17.01 7.79 87.66 0.68 17.69 16 12 O -0.55 -22.37 13.51 -3.01 -0.04 -22.41 16 13 N -0.61 -15.35 5.40 -312.64 -1.69 -17.04 16 14 C 0.52 15.60 8.83 260.63 2.30 17.90 16 15 N -0.55 -16.31 11.25 -198.53 -2.23 -18.55 16 16 C 0.21 5.98 8.27 180.47 1.49 7.47 16 17 S 0.08 1.54 22.16 -56.49 -1.25 0.29 16 18 C -0.13 -2.22 5.92 71.98 0.43 -1.79 16 19 C 0.10 1.09 7.05 71.98 0.51 1.60 16 20 O -0.59 -7.55 13.66 -148.98 -2.04 -9.59 16 21 N -0.33 -10.68 12.34 -58.59 -0.72 -11.40 16 22 N -0.48 -15.70 7.04 -58.70 -0.41 -16.12 16 23 H 0.45 15.49 6.47 -213.12 -1.38 14.11 16 24 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 25 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 26 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 27 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.13 3.37 8.14 -2.39 -0.02 3.36 16 29 H 0.45 7.69 8.82 -92.71 -0.82 6.87 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.41 0.99 9.12 -74.05 -0.68 0.31 16 Total: -1.00 -75.04 317.35 -1.37 -76.41 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -1.70 Total: 16.86 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.40 Total: 13.65 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -4.77 Total: -119.52 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -2.08 Total: -32.00 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.25 Total: 0.29 kcal Total: -75.04 -1.37 -76.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360367377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.436 kcal (2) G-P(sol) polarization free energy of solvation -75.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds