Wall clock time and date at job start Tue Mar 31 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39685 * 120.98759 * 323.68651 * 3 2 1 5 5 C 1.38205 * 119.12698 * 179.97438 * 4 3 2 6 6 N 1.31925 * 121.20003 * 0.02984 * 5 4 3 7 7 C 1.31689 * 122.20399 * 359.64293 * 6 5 4 8 8 C 1.39393 * 120.70751 * 0.64615 * 7 6 5 9 9 C 1.47781 * 120.63635 * 179.67468 * 8 7 6 10 10 O 1.21555 * 120.00201 * 229.32935 * 9 8 7 11 11 N 1.34774 * 119.99707 * 49.32314 * 9 8 7 12 12 C 1.46964 * 120.59436 * 185.34189 * 11 9 8 13 13 C 1.53367 * 108.63643 * 235.25088 * 12 11 9 14 14 N 1.46967 * 108.63590 * 310.57276 * 13 12 11 15 15 C 1.36931 * 120.59321 * 235.20227 * 14 13 12 16 16 H 1.08002 * 120.00198 * 30.82253 * 15 14 13 17 17 C 1.38817 * 119.99594 * 211.09088 * 15 14 13 18 18 N 1.31613 * 120.00097 * 10.37320 * 17 15 14 19 19 Si 1.86800 * 119.99572 * 190.37104 * 17 15 14 20 20 H 1.48500 * 109.47318 * 90.00350 * 19 17 15 21 21 H 1.48505 * 109.46975 * 210.00224 * 19 17 15 22 22 H 1.48502 * 109.47532 * 330.00017 * 19 17 15 23 23 C 1.46963 * 118.80585 * 55.47967 * 14 13 12 24 24 C 1.46967 * 120.59751 * 5.36659 * 11 9 8 25 25 H 1.08003 * 120.43226 * 359.96063 * 4 3 2 26 26 H 1.07996 * 119.40292 * 180.02562 * 5 4 3 27 27 H 1.07993 * 119.64389 * 180.34105 * 7 6 5 28 28 H 1.09005 * 109.61170 * 115.49994 * 12 11 9 29 29 H 1.09007 * 109.61047 * 354.99643 * 12 11 9 30 30 H 1.09001 * 109.61245 * 190.83077 * 13 12 11 31 31 H 1.09001 * 109.61298 * 70.32096 * 13 12 11 32 32 H 0.97003 * 119.99709 * 179.97438 * 18 17 15 33 33 H 1.08996 * 109.61372 * 64.26698 * 23 14 13 34 34 H 1.09001 * 109.60472 * 184.78030 * 23 14 13 35 35 H 1.09001 * 109.61096 * 244.49884 * 24 11 9 36 36 H 1.09001 * 109.60610 * 5.00344 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2877 -0.9640 0.7092 5 6 4.6690 -0.9275 0.6821 6 7 5.3150 -0.0005 0.0012 7 6 4.6871 0.9284 -0.6896 8 6 3.2942 0.9757 -0.7169 9 6 2.5913 2.0231 -1.4868 10 8 1.7022 2.6674 -0.9653 11 7 2.9361 2.2640 -2.7673 12 6 2.3285 3.3781 -3.5086 13 6 1.7005 2.8265 -4.7945 14 7 2.6904 1.9795 -5.4747 15 6 3.0399 2.2238 -6.7759 16 1 3.0213 3.2331 -7.1597 17 6 3.4127 1.1733 -7.6033 18 7 3.2373 -0.0698 -7.2081 19 14 4.1634 1.5242 -9.2774 20 1 5.6397 1.6190 -9.1480 21 1 3.8183 0.4253 -10.2148 22 1 3.6290 2.8071 -9.8006 23 6 3.2938 0.8620 -4.7351 24 6 3.9259 1.4170 -3.4475 25 1 2.7714 -1.7280 1.2713 26 1 5.2298 -1.6714 1.2285 27 1 5.2574 1.6643 -1.2368 28 1 3.0950 4.1109 -3.7608 29 1 1.5576 3.8472 -2.8970 30 1 1.4163 3.6526 -5.4464 31 1 0.8202 2.2334 -4.5466 32 1 3.4975 -0.8038 -7.7865 33 1 2.5244 0.1323 -4.4831 34 1 4.0621 0.3905 -5.3478 35 1 4.8062 2.0101 -3.6954 36 1 4.2101 0.5910 -2.7956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362806092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:05 Heat of formation + Delta-G solvation = 51.855637 kcal Electronic energy + Delta-G solvation = -22298.224383 eV Core-core repulsion = 18976.118327 eV Total energy + Delta-G solvation = -3322.106056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.04496 -40.39788 -38.55344 -37.86767 -35.73035 -34.01077 -33.56317 -32.51308 -31.68692 -28.87128 -26.56225 -25.79046 -24.91271 -24.43991 -22.43383 -20.98608 -20.03525 -19.14462 -18.14511 -17.70375 -17.28568 -16.72596 -16.38692 -16.12886 -15.59192 -15.51687 -15.37803 -15.20374 -15.12249 -14.79460 -14.41373 -14.37881 -14.21327 -13.97244 -13.37865 -13.12938 -13.11527 -12.71143 -12.51483 -12.26144 -12.05090 -11.98478 -11.74848 -11.38225 -11.01894 -10.66793 -10.61158 -10.24416 -9.94260 -8.65947 -7.88555 -5.42735 -0.72253 -0.21383 1.33001 1.42702 1.50860 1.51655 1.60081 1.80906 1.85561 2.48234 2.50873 2.71192 3.13219 3.27892 3.44441 3.55890 3.64582 3.77905 4.12828 4.18816 4.20909 4.33100 4.45525 4.53398 4.57170 4.63848 4.70977 4.75604 4.86388 5.02047 5.18483 5.41565 5.46140 5.59748 5.63461 6.16503 6.27497 6.36734 6.72143 6.89398 7.10674 7.75628 8.30297 9.16108 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.021107 B = 0.004801 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.236844 B = 5831.297236 C = 6299.679472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.262 3.738 3 C 0.045 3.955 4 C -0.107 4.107 5 C 0.137 3.863 6 N -0.474 5.474 7 C 0.146 3.854 8 C -0.151 4.151 9 C 0.550 3.450 10 O -0.575 6.575 11 N -0.588 5.588 12 C 0.106 3.894 13 C 0.130 3.870 14 N -0.607 5.607 15 C -0.264 4.264 16 H 0.072 0.928 17 C -0.044 4.044 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.271 1.271 23 C 0.163 3.837 24 C 0.092 3.908 25 H 0.189 0.811 26 H 0.220 0.780 27 H 0.183 0.817 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.077 0.923 31 H -0.001 1.001 32 H 0.252 0.748 33 H -0.011 1.011 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.927 -1.870 15.443 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.054 4.054 3 C 0.033 3.967 4 C -0.129 4.129 5 C -0.020 4.020 6 N -0.182 5.182 7 C -0.011 4.011 8 C -0.159 4.159 9 C 0.338 3.662 10 O -0.455 6.455 11 N -0.319 5.319 12 C -0.018 4.018 13 C 0.004 3.996 14 N -0.331 5.331 15 C -0.394 4.394 16 H 0.089 0.911 17 C -0.240 4.240 18 N -0.582 5.582 19 Si 0.800 3.200 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.196 1.196 23 C 0.037 3.963 24 C -0.031 4.031 25 H 0.206 0.794 26 H 0.236 0.764 27 H 0.200 0.800 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.017 0.983 32 H 0.061 0.939 33 H 0.007 0.993 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.650 -1.642 15.574 17.014 hybrid contribution -0.865 0.085 -1.329 1.588 sum 5.785 -1.557 14.245 15.454 Atomic orbital electron populations 1.81202 1.13253 1.08335 1.07850 1.25741 0.92979 0.93026 0.93661 1.16366 0.83914 0.97287 0.99136 1.22674 0.95955 0.97171 0.97101 1.23804 0.90830 0.94736 0.92597 1.67796 1.41007 1.02995 1.06444 1.23169 0.88206 0.95908 0.93820 1.20883 0.96690 0.97194 1.01144 1.18519 0.82544 0.83267 0.81908 1.90772 1.32256 1.51995 1.70523 1.48079 1.41989 1.31220 1.10590 1.22122 0.98673 0.88199 0.92800 1.21371 0.90545 0.94590 0.93108 1.44241 1.45085 1.33505 1.10227 1.19550 1.40067 0.92599 0.87198 0.91054 1.25908 1.01793 0.95113 1.01182 1.70096 1.51391 0.98462 1.38281 0.85199 0.78438 0.76979 0.79359 1.20496 1.22525 1.19602 1.21145 0.96166 0.88558 0.90455 1.22788 0.91062 0.94525 0.94768 0.79358 0.76365 0.79996 0.89462 0.89707 0.90474 0.98283 0.93851 0.99281 0.89737 0.89258 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -15.38 18.54 19.01 0.35 -15.02 16 2 C 0.26 7.95 13.93 88.33 1.23 9.18 16 3 C 0.04 1.03 5.78 -20.97 -0.12 0.91 16 4 C -0.11 -1.35 9.85 22.61 0.22 -1.12 16 5 C 0.14 1.43 11.16 84.67 0.95 2.38 16 6 N -0.47 -7.92 10.32 -194.99 -2.01 -9.94 16 7 C 0.15 2.92 8.72 84.99 0.74 3.66 16 8 C -0.15 -3.89 4.85 -19.76 -0.10 -3.99 16 9 C 0.55 18.54 6.78 86.77 0.59 19.13 16 10 O -0.57 -23.20 15.59 -3.89 -0.06 -23.27 16 11 N -0.59 -20.03 2.95 -820.63 -2.42 -22.45 16 12 C 0.11 3.70 6.60 86.41 0.57 4.27 16 13 C 0.13 5.46 6.67 86.41 0.58 6.03 16 14 N -0.61 -29.20 2.96 -697.36 -2.06 -31.26 16 15 C -0.26 -13.73 9.59 84.04 0.81 -12.93 16 16 H 0.07 3.59 7.85 -2.91 -0.02 3.56 16 17 C -0.04 -2.35 5.06 84.86 0.43 -1.92 16 18 N -0.94 -52.70 10.95 21.65 0.24 -52.46 16 19 Si 0.97 42.62 29.57 68.60 2.03 44.64 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 C 0.16 7.33 5.50 86.56 0.48 7.81 16 24 C 0.09 3.01 5.54 86.56 0.48 3.49 16 25 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 26 H 0.22 0.24 8.06 -2.91 -0.02 0.21 16 27 H 0.18 3.16 7.40 -2.91 -0.02 3.14 16 28 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 29 H 0.08 2.97 6.99 -2.38 -0.02 2.95 16 30 H 0.08 3.04 7.93 -2.39 -0.02 3.02 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.25 13.78 8.31 -92.71 -0.77 13.00 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.08 4.21 5.95 -2.39 -0.01 4.19 16 35 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.10 2.67 5.07 -2.39 -0.01 2.66 16 Total: -1.00 -72.95 310.41 4.03 -68.92 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.12 Total: 3.94 kcal Atomic # 6 Polarization: 30.05 SS G_CDS: 6.85 Total: 36.89 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -5.91 Total: -131.13 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.95 4.03 -68.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362806092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.774 kcal (2) G-P(sol) polarization free energy of solvation -72.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds