Wall clock time and date at job start Tue Mar 31 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47195 * 2 1 4 4 C 1.50699 * 109.47184 * 239.99693 * 2 1 3 5 5 H 1.08000 * 119.99966 * 240.00246 * 4 2 1 6 6 C 1.37878 * 120.00132 * 60.00335 * 4 2 1 7 7 N 1.31516 * 119.99840 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00030 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47217 * 60.00270 * 8 6 4 10 10 H 1.48503 * 109.46892 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47449 * 299.99733 * 8 6 4 12 12 C 1.53004 * 109.47199 * 119.99836 * 2 1 3 13 13 N 1.46508 * 109.46760 * 300.00217 * 12 2 1 14 14 C 1.34781 * 119.99545 * 179.97438 * 13 12 2 15 15 O 1.21280 * 120.00301 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.46498 * 109.47084 * 180.02562 * 16 14 13 18 18 C 1.47019 * 121.01343 * 270.00072 * 17 16 14 19 19 S 1.83700 * 103.10835 * 196.75789 * 18 17 16 20 20 C 1.83790 * 94.16119 * 338.08425 * 19 18 17 21 21 C 1.32765 * 121.01771 * 90.02639 * 17 16 14 22 22 O 1.21282 * 121.81041 * 359.63883 * 21 17 16 23 23 H 1.09001 * 109.46960 * 300.00406 * 1 2 3 24 24 H 1.08999 * 109.46912 * 59.99770 * 1 2 3 25 25 H 1.09002 * 109.47113 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46933 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47041 * 299.99561 * 3 2 1 28 28 H 1.08996 * 109.46795 * 59.99912 * 3 2 1 29 29 H 0.96992 * 120.00312 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47666 * 180.02562 * 12 2 1 31 31 H 1.08995 * 109.47022 * 59.99608 * 12 2 1 32 32 H 0.97000 * 120.00077 * 359.97438 * 13 12 2 33 33 H 1.09006 * 109.47156 * 59.99786 * 16 14 13 34 34 H 1.09002 * 109.47223 * 300.00116 * 16 14 13 35 35 H 1.09002 * 110.68800 * 78.35242 * 18 17 16 36 36 H 1.09004 * 110.69152 * 315.16224 * 18 17 16 37 37 H 1.09000 * 110.84925 * 139.67147 * 20 19 18 38 38 H 1.08997 * 110.85326 * 263.09632 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8281 -2.5199 -4.0081 10 1 1.8271 -0.4201 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5733 -1.4779 3.7809 16 6 1.3749 0.2195 4.9000 17 7 1.8631 -0.4711 6.0962 18 6 1.0865 -1.5553 6.7149 19 16 1.8336 -1.7013 8.3868 20 6 3.4193 -0.9137 7.8935 21 6 3.0201 -0.1367 6.6549 22 8 3.7196 0.7430 6.1990 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1301 1.4425 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7083 1.1608 -3.4844 30 1 3.1300 -0.7209 1.2496 31 1 1.6767 -1.7488 1.2493 32 1 0.9942 0.7583 2.3564 33 1 0.2848 0.2203 4.8999 34 1 1.7390 1.2469 4.9000 35 1 1.2082 -2.4834 6.1564 36 1 0.0335 -1.2827 6.7862 37 1 3.7782 -0.2424 8.6737 38 1 4.1700 -1.6677 7.6573 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457993691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:11 Heat of formation + Delta-G solvation = -82.065448 kcal Electronic energy + Delta-G solvation = -20784.981793 eV Core-core repulsion = 17560.219684 eV Total energy + Delta-G solvation = -3224.762110 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67849 -40.32636 -38.16607 -36.90427 -35.03267 -32.94359 -31.92743 -29.48427 -27.70525 -27.56047 -27.28012 -26.06642 -22.18281 -20.88494 -20.55954 -18.85675 -18.75811 -17.91038 -17.77427 -17.04473 -16.68165 -16.42234 -16.20305 -16.00809 -15.08705 -14.96057 -14.75190 -14.66338 -14.55915 -14.02107 -13.91292 -13.49974 -13.24558 -13.09272 -12.99005 -12.66070 -12.64279 -12.25110 -12.14719 -12.04257 -11.49032 -11.43345 -11.27964 -11.10367 -10.72470 -10.40523 -10.10286 -9.98209 -8.97141 -8.03469 -6.19276 0.39323 0.67811 1.17279 1.42889 1.44435 1.50726 1.59942 1.61932 2.35015 2.50437 2.99717 3.20130 3.74693 4.02853 4.03302 4.11829 4.25969 4.31771 4.37703 4.41863 4.49765 4.70781 4.81344 4.98189 5.05822 5.10588 5.19392 5.34844 5.56708 5.66135 5.67520 5.78683 6.15432 6.21599 6.42788 6.57510 6.71223 6.84783 7.25665 7.48507 8.95066 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.039695 B = 0.003224 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.215820 B = 8683.283639 C = 8712.823456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.532 4.532 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.279 1.279 12 C 0.150 3.850 13 N -0.706 5.706 14 C 0.486 3.514 15 O -0.587 6.587 16 C 0.105 3.895 17 N -0.593 5.593 18 C 0.153 3.847 19 S -0.243 6.243 20 C -0.091 4.091 21 C 0.511 3.489 22 O -0.561 6.561 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.019 0.981 26 H 0.012 0.988 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.261 0.739 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.412 0.588 33 H 0.164 0.836 34 H 0.124 0.876 35 H 0.101 0.899 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -0.738 19.903 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.026 3.974 13 N -0.358 5.358 14 C 0.272 3.728 15 O -0.468 6.468 16 C -0.022 4.022 17 N -0.324 5.324 18 C -0.080 4.080 19 S -0.017 6.017 20 C -0.242 4.242 21 C 0.298 3.702 22 O -0.440 6.440 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.032 0.968 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.250 0.750 33 H 0.182 0.818 34 H 0.142 0.858 35 H 0.119 0.881 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.872 -1.324 20.660 21.061 hybrid contribution 0.852 0.100 -2.429 2.576 sum -3.020 -1.224 18.231 18.520 Atomic orbital electron populations 1.21656 0.96608 0.98815 1.00648 1.18357 0.93613 0.92812 0.90147 1.21687 0.97661 0.98059 1.00558 1.21259 1.31843 1.12227 0.91747 0.93955 1.25428 0.95128 0.95585 1.00892 1.69888 1.36854 1.23194 1.23700 0.85850 0.78535 0.78927 0.79696 1.20134 1.20730 1.20507 1.21230 0.96572 0.95220 0.84354 1.46074 1.52684 1.31934 1.05113 1.21746 0.80235 0.84770 0.86070 1.90663 1.39953 1.28753 1.87420 1.21579 1.03662 0.96992 0.79980 1.47422 1.21428 1.36053 1.27528 1.24336 1.00036 0.92688 0.90898 1.88312 1.16000 1.81763 1.15656 1.24237 0.98618 1.03053 0.98267 1.20644 0.80485 0.83301 0.85786 1.90775 1.53262 1.33305 1.66654 0.93860 0.92012 0.96147 0.96846 0.91840 0.94156 0.92978 0.95227 0.94031 0.75036 0.81849 0.85802 0.88075 0.82915 0.82564 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 8.08 71.98 0.58 -4.45 16 2 C 0.05 2.32 0.50 -52.92 -0.03 2.29 16 3 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 4 C -0.53 -28.00 8.01 25.60 0.21 -27.80 16 5 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -47.37 9.35 21.45 0.20 -47.17 16 8 Si 0.94 42.41 29.54 68.60 2.03 44.44 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 C 0.15 6.24 4.50 86.38 0.39 6.63 16 13 N -0.71 -22.47 4.96 -463.05 -2.30 -24.76 16 14 C 0.49 14.94 7.90 87.66 0.69 15.63 16 15 O -0.59 -23.36 16.43 -3.03 -0.05 -23.40 16 16 C 0.11 2.07 6.03 85.63 0.52 2.59 16 17 N -0.59 -12.33 2.32 -836.26 -1.94 -14.27 16 18 C 0.15 2.25 7.84 127.67 1.00 3.25 16 19 S -0.24 -3.77 23.55 -56.49 -1.33 -5.10 16 20 C -0.09 -1.55 7.47 71.51 0.53 -1.02 16 21 C 0.51 12.74 7.67 88.24 0.68 13.42 16 22 O -0.56 -18.75 16.94 -3.04 -0.05 -18.80 16 23 H 0.04 1.46 6.86 -2.39 -0.02 1.44 16 24 H 0.06 2.94 6.07 -2.39 -0.01 2.93 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 28 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 29 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.41 10.85 6.16 -92.71 -0.57 10.28 16 33 H 0.16 1.59 8.10 -2.38 -0.02 1.58 16 34 H 0.12 2.43 7.54 -2.39 -0.02 2.41 16 35 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.15 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.16 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -69.61 324.50 2.65 -66.96 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.50 Total: 14.34 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.59 Total: 7.76 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -4.04 Total: -86.20 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.10 Total: -42.20 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.33 Total: -5.10 kcal Total: -69.61 2.65 -66.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.104 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds