Wall clock time and date at job start Tue Mar 31 2020 03:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47418 * 351.95835 * 3 2 1 5 5 C 1.37097 * 120.00242 * 95.84179 * 4 3 2 6 6 H 1.08005 * 120.00104 * 160.63403 * 5 4 3 7 7 C 1.38949 * 119.99830 * 340.62398 * 5 4 3 8 8 N 1.31411 * 120.00277 * 346.10955 * 7 5 4 9 9 Si 1.86801 * 119.99920 * 166.10829 * 7 5 4 10 10 H 1.48505 * 109.46999 * 90.00118 * 9 7 5 11 11 H 1.48488 * 109.47228 * 210.00380 * 9 7 5 12 12 H 1.48500 * 109.47119 * 330.00643 * 9 7 5 13 13 C 1.34780 * 119.99732 * 275.83401 * 4 3 2 14 14 O 1.21296 * 120.00035 * 186.11395 * 13 4 3 15 15 C 1.50698 * 119.99907 * 6.12195 * 13 4 3 16 16 H 1.09006 * 109.71697 * 29.08149 * 15 13 4 17 17 C 1.53301 * 109.68747 * 149.62382 * 15 13 4 18 18 C 1.52923 * 110.28560 * 176.10965 * 17 15 13 19 19 C 1.51392 * 109.72112 * 300.65735 * 18 17 15 20 20 O 1.21433 * 121.44081 * 211.07770 * 19 18 17 21 21 C 1.41530 * 117.21828 * 31.28197 * 19 18 17 22 22 C 1.37266 * 129.84862 * 178.26842 * 21 19 18 23 23 C 1.39926 * 106.75263 * 180.36398 * 22 21 19 24 24 C 1.35943 * 107.97902 * 359.96238 * 23 22 21 25 25 N 1.34090 * 109.01607 * 359.87177 * 24 23 22 26 26 H 4.40631 * 5.51501 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.47391 * 231.95053 * 3 2 1 28 28 H 1.09000 * 109.47186 * 111.95741 * 3 2 1 29 29 H 0.96996 * 120.00283 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.31168 * 296.31354 * 17 15 13 31 31 H 1.08999 * 109.30467 * 55.91315 * 17 15 13 32 32 H 1.09001 * 109.42761 * 60.92534 * 18 17 15 33 33 H 1.08997 * 109.43624 * 180.77847 * 18 17 15 34 34 H 1.07998 * 126.62156 * 0.32924 * 22 21 19 35 35 H 1.07993 * 126.01164 * 179.97438 * 23 22 21 36 36 H 1.07995 * 125.49223 * 179.87771 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3667 0.1932 5 6 3.4778 -2.1318 -0.8915 6 1 4.1164 -2.9935 -0.7644 7 6 3.0035 -1.7988 -2.1543 8 7 2.0226 -0.9334 -2.2808 9 14 3.7601 -2.5813 -3.6725 10 1 3.0302 -3.8323 -4.0006 11 1 3.6644 -1.6381 -4.8154 12 1 5.1872 -2.8957 -3.4083 13 6 3.2480 -1.8724 1.4374 14 8 3.7558 -2.9610 1.6058 15 6 2.7433 -1.0854 2.6193 16 1 1.9128 -0.4504 2.3108 17 6 2.2774 -2.0467 3.7189 18 6 1.8524 -1.2641 4.9621 19 6 3.0172 -0.4419 5.4711 20 8 3.1510 -0.1967 6.6529 21 6 3.9424 0.0335 4.5114 22 6 5.0574 0.8168 4.6771 23 6 5.6128 1.0020 3.4063 24 6 4.8374 0.3377 2.5087 25 7 3.8262 -0.2555 3.1594 26 1 -1.0497 -0.0005 0.0003 27 1 3.0091 0.6342 0.8093 28 1 3.0092 0.3851 -0.9531 29 1 1.6918 -0.7007 -3.1623 30 1 1.4320 -2.6297 3.3536 31 1 3.0941 -2.7201 3.9787 32 1 1.0224 -0.6044 4.7091 33 1 1.5372 -1.9606 5.7390 34 1 5.4330 1.2140 5.6086 35 1 6.5012 1.5721 3.1785 36 1 5.0085 0.2946 1.4432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490960638.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:59 Heat of formation + Delta-G solvation = 37.716008 kcal Electronic energy + Delta-G solvation = -22883.180602 eV Core-core repulsion = 19528.168655 eV Total energy + Delta-G solvation = -3355.011947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.04131 -40.57868 -39.75627 -37.43962 -36.27654 -34.12112 -33.17299 -32.39166 -30.37885 -29.05698 -28.34570 -26.67936 -24.46568 -23.21418 -22.15257 -20.93836 -19.79372 -19.34347 -18.83582 -18.56256 -17.90713 -16.92792 -16.52802 -16.19143 -16.03882 -15.77574 -15.52376 -15.33285 -14.97155 -14.79818 -14.19575 -14.10350 -13.67517 -13.55287 -13.35085 -13.30011 -13.13274 -12.87403 -12.82120 -12.57139 -12.21283 -12.15036 -11.33763 -11.17845 -10.83564 -10.76665 -10.60573 -9.95754 -9.77493 -9.30999 -8.39011 -6.06488 0.00205 1.09239 1.42093 1.44949 1.53349 1.60456 1.90803 2.14921 2.21082 2.26525 2.31993 2.82517 2.99941 3.11673 3.31164 3.64679 3.72525 3.81569 3.91605 3.96371 4.17360 4.31365 4.41503 4.49622 4.50488 4.69636 4.82976 4.90538 4.97396 5.06378 5.22967 5.36905 5.38831 5.71318 5.89256 5.92975 6.13211 6.29282 6.50189 6.99711 7.06442 7.22390 7.74734 8.57086 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.022985 B = 0.005540 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.882802 B = 5052.611954 C = 5312.015470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.165 4.165 3 C 0.231 3.769 4 N -0.430 5.430 5 C -0.348 4.348 6 H 0.080 0.920 7 C 0.009 3.991 8 N -0.868 5.868 9 Si 0.987 3.013 10 H -0.280 1.280 11 H -0.268 1.268 12 H -0.271 1.271 13 C 0.432 3.568 14 O -0.609 6.609 15 C 0.125 3.875 16 H 0.116 0.884 17 C -0.106 4.106 18 C -0.156 4.156 19 C 0.426 3.574 20 O -0.494 6.494 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.217 4.217 24 C 0.036 3.964 25 N -0.408 5.408 26 H 0.237 0.763 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.276 0.724 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 5.989 5.779 8.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.166 4.166 3 C 0.109 3.891 4 N -0.147 5.147 5 C -0.476 4.476 6 H 0.098 0.902 7 C -0.195 4.195 8 N -0.505 5.505 9 Si 0.811 3.189 10 H -0.205 1.205 11 H -0.192 1.192 12 H -0.195 1.195 13 C 0.220 3.780 14 O -0.494 6.494 15 C 0.020 3.980 16 H 0.133 0.867 17 C -0.144 4.144 18 C -0.194 4.194 19 C 0.309 3.691 20 O -0.373 6.373 21 C -0.235 4.235 22 C -0.118 4.118 23 C -0.240 4.240 24 C -0.102 4.102 25 N -0.085 5.085 26 H 0.253 0.747 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.470 5.443 6.121 8.322 hybrid contribution 0.112 -0.560 -1.343 1.459 sum -1.358 4.883 4.778 6.966 Atomic orbital electron populations 1.25211 0.96323 0.99620 1.03655 1.23262 0.94796 1.00607 0.97931 1.18438 0.85144 0.82985 1.02504 1.43913 1.54136 1.12004 1.04618 1.19640 1.30200 1.12059 0.85663 0.90186 1.25992 0.95004 0.97359 1.01163 1.70080 1.22355 1.32626 1.25393 0.85023 0.78649 0.77997 0.77243 1.20548 1.19233 1.19545 1.20289 0.86076 0.87175 0.84497 1.90535 1.49368 1.24195 1.85315 1.21873 0.89341 0.92887 0.93855 0.86655 1.21606 1.03200 0.96983 0.92596 1.22191 0.98074 1.00707 0.98393 1.20453 0.84872 0.76890 0.86852 1.90554 1.74563 1.53341 1.18853 1.20336 1.05376 1.13431 0.84372 1.21556 0.93360 0.97625 0.99258 1.21323 1.03623 1.07667 0.91390 1.22239 0.90046 0.98363 0.99591 1.44426 1.20855 1.36338 1.06850 0.74677 0.90093 0.87706 0.91358 0.87487 0.91347 0.85514 0.85890 0.81906 0.80990 0.81710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.00 19.25 74.32 1.43 -6.57 16 2 C -0.16 -6.50 10.21 31.13 0.32 -6.18 16 3 C 0.23 9.31 4.55 84.57 0.39 9.70 16 4 N -0.43 -19.97 2.60 -645.42 -1.68 -21.65 16 5 C -0.35 -17.99 9.37 84.04 0.79 -17.20 16 6 H 0.08 4.49 7.33 -2.91 -0.02 4.46 16 7 C 0.01 0.45 5.05 84.93 0.43 0.87 16 8 N -0.87 -41.14 9.11 21.66 0.20 -40.95 16 9 Si 0.99 39.07 29.58 68.60 2.03 41.10 16 10 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 11 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 13 C 0.43 19.49 6.10 87.66 0.53 20.03 16 14 O -0.61 -32.29 15.77 -3.08 -0.05 -32.34 16 15 C 0.13 4.38 2.52 44.30 0.11 4.49 16 16 H 0.12 3.79 5.93 -2.38 -0.01 3.77 16 17 C -0.11 -3.21 4.91 30.67 0.15 -3.06 16 18 C -0.16 -3.81 6.10 30.04 0.18 -3.63 16 19 C 0.43 13.05 6.95 26.72 0.19 13.24 16 20 O -0.49 -17.05 17.81 -3.50 -0.06 -17.11 16 21 C -0.13 -4.11 6.50 38.63 0.25 -3.86 16 22 C -0.09 -2.66 10.82 22.45 0.24 -2.42 16 23 C -0.22 -5.95 10.83 22.15 0.24 -5.72 16 24 C 0.04 1.16 9.45 83.81 0.79 1.95 16 25 N -0.41 -13.71 3.00 -497.22 -1.49 -15.21 16 26 H 0.24 6.11 7.80 -4.43 -0.03 6.07 16 27 H 0.08 2.80 5.29 -2.39 -0.01 2.79 16 28 H 0.11 4.53 6.33 -2.39 -0.02 4.51 16 29 H 0.28 12.44 8.31 -92.71 -0.77 11.67 16 30 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.07 2.38 7.72 -2.39 -0.02 2.36 16 32 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.17 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.17 5.33 7.24 -2.91 -0.02 5.31 16 Total: -1.00 -63.95 308.30 6.09 -57.86 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 1.11 Total: 26.66 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.04 Total: 1.63 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -2.98 Total: -77.80 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.11 Total: -49.45 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -63.95 6.09 -57.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490960638.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.573 kcal (2) G-P(sol) polarization free energy of solvation -63.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds