Wall clock time and date at job start Tue Mar 31 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46922 * 233.74932 * 3 2 1 5 5 C 1.37092 * 120.00329 * 263.93003 * 4 3 2 6 6 H 1.07999 * 120.00454 * 199.75071 * 5 4 3 7 7 C 1.38957 * 119.99945 * 19.74761 * 5 4 3 8 8 N 1.31409 * 119.99739 * 21.75352 * 7 5 4 9 9 Si 1.86797 * 119.99914 * 201.74756 * 7 5 4 10 10 H 1.48506 * 109.47067 * 90.00739 * 9 7 5 11 11 H 1.48503 * 109.47011 * 209.99997 * 9 7 5 12 12 H 1.48497 * 109.47502 * 330.00074 * 9 7 5 13 13 C 1.34781 * 119.99764 * 83.93038 * 4 3 2 14 14 O 1.21291 * 120.00034 * 180.02562 * 13 4 3 15 15 C 1.50704 * 120.00237 * 359.97438 * 13 4 3 16 16 C 1.50697 * 109.47275 * 180.02562 * 15 13 4 17 17 C 1.38361 * 119.85114 * 90.00032 * 16 15 13 18 18 C 1.37954 * 120.14413 * 179.97438 * 17 16 15 19 19 C 1.39575 * 119.85257 * 0.02562 * 18 17 16 20 20 C 1.47851 * 120.14566 * 179.97438 * 19 18 17 21 21 N 1.34768 * 119.99925 * 180.02562 * 20 19 18 22 22 O 1.21557 * 119.99901 * 359.97438 * 20 19 18 23 23 C 1.39578 * 119.71363 * 0.25688 * 19 18 17 24 24 C 1.37958 * 119.84814 * 359.46093 * 23 19 18 25 25 H 4.40639 * 5.51447 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47257 * 113.75239 * 3 2 1 27 27 H 1.09003 * 109.47297 * 353.75060 * 3 2 1 28 28 H 0.96996 * 119.99794 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46535 * 60.00070 * 15 13 4 30 30 H 1.08994 * 109.46986 * 300.00784 * 15 13 4 31 31 H 1.07998 * 119.92638 * 0.02584 * 17 16 15 32 32 H 1.08004 * 120.07626 * 180.02562 * 18 17 16 33 33 H 0.96990 * 120.00476 * 359.97438 * 21 20 19 34 34 H 0.97006 * 119.99455 * 179.72873 * 21 20 19 35 35 H 1.07994 * 120.07508 * 179.72439 * 23 19 18 36 36 H 1.07999 * 119.92435 * 180.27787 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8176 1.1139 5 6 3.4802 2.1273 0.9033 6 1 4.1231 2.6357 1.6065 7 6 3.0040 2.8006 -0.2151 8 7 1.9232 2.3733 -0.8285 9 14 3.9001 4.3132 -0.8464 10 1 4.9262 3.9026 -1.8382 11 1 2.9275 5.2313 -1.4918 12 1 4.5587 5.0081 0.2886 13 6 3.2424 0.2816 2.3458 14 8 3.6459 0.9581 3.2681 15 6 2.8612 -1.1579 2.5775 16 6 3.0731 -1.5064 4.0282 17 6 2.0447 -1.3282 4.9366 18 6 2.2319 -1.6458 6.2660 19 6 3.4621 -2.1472 6.6940 20 6 3.6700 -2.4892 8.1173 21 7 4.8592 -2.9727 8.5274 22 8 2.7685 -2.3333 8.9177 23 6 4.4972 -2.3190 5.7735 24 6 4.2950 -2.0030 4.4459 25 1 -1.0501 0.0000 -0.0003 26 1 3.0091 0.4148 -0.9406 27 1 3.0098 -1.0207 0.1119 28 1 1.5910 2.8431 -1.6094 29 1 3.4810 -1.8026 1.9543 30 1 1.8122 -1.3021 2.3189 31 1 1.0932 -0.9405 4.6040 32 1 1.4283 -1.5066 6.9740 33 1 5.5786 -3.0967 7.8889 34 1 4.9968 -3.1933 9.4620 35 1 5.4529 -2.7024 6.0991 36 1 5.0937 -2.1397 3.7319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490962489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:54 Heat of formation + Delta-G solvation = -5.155752 kcal Electronic energy + Delta-G solvation = -21423.899640 eV Core-core repulsion = 18067.028634 eV Total energy + Delta-G solvation = -3356.871006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.23939 -40.49746 -39.11562 -37.00921 -34.98089 -34.16471 -33.34549 -32.98168 -31.85051 -29.33786 -28.06719 -26.37341 -24.10491 -23.61647 -21.61135 -20.66575 -19.64969 -19.13826 -18.38467 -17.93628 -17.84182 -16.58783 -16.43977 -16.28011 -16.01982 -15.82223 -15.70889 -15.44157 -14.60241 -14.46500 -14.24446 -14.19986 -13.95202 -13.54551 -13.23446 -12.92499 -12.83648 -12.56131 -12.39201 -12.14820 -11.95415 -11.21043 -11.13845 -11.06349 -10.75005 -10.62793 -10.36338 -9.91909 -9.78532 -9.69091 -8.29357 -5.91034 -0.15944 0.45277 1.37825 1.44006 1.54215 1.80248 1.93788 2.18288 2.35548 2.41519 2.53550 2.84350 3.07166 3.34849 3.71778 3.82523 3.91846 3.95387 4.05399 4.20032 4.34484 4.44873 4.59915 4.67924 4.73931 4.90862 4.98552 5.06785 5.27046 5.36434 5.45677 5.50149 5.63531 5.85023 5.93475 6.10718 6.40274 6.47687 7.17701 7.19144 7.27534 7.45788 8.02984 8.68601 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.026293 B = 0.003749 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.666622 B = 7466.583672 C = 7979.401520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.153 4.153 3 C 0.233 3.767 4 N -0.453 5.453 5 C -0.351 4.351 6 H 0.073 0.927 7 C 0.005 3.995 8 N -0.870 5.870 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.448 3.552 14 O -0.621 6.621 15 C -0.091 4.091 16 C -0.034 4.034 17 C -0.131 4.131 18 C -0.072 4.072 19 C -0.163 4.163 20 C 0.566 3.434 21 N -0.826 5.826 22 O -0.591 6.591 23 C -0.071 4.071 24 C -0.122 4.122 25 H 0.229 0.771 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.271 0.729 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.417 0.583 34 H 0.414 0.586 35 H 0.168 0.832 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.410 -13.761 5.241 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.155 4.155 3 C 0.111 3.889 4 N -0.171 5.171 5 C -0.479 4.479 6 H 0.091 0.909 7 C -0.199 4.199 8 N -0.507 5.507 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.205 1.205 13 C 0.238 3.762 14 O -0.508 6.508 15 C -0.131 4.131 16 C -0.034 4.034 17 C -0.149 4.149 18 C -0.091 4.091 19 C -0.167 4.167 20 C 0.353 3.647 21 N -0.391 5.391 22 O -0.473 6.473 23 C -0.089 4.089 24 C -0.140 4.140 25 H 0.246 0.754 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.143 0.857 30 H 0.117 0.883 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.250 0.750 34 H 0.246 0.754 35 H 0.186 0.814 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.881 -13.220 5.864 15.264 hybrid contribution 0.046 1.220 -0.393 1.282 sum 4.927 -12.000 5.471 14.079 Atomic orbital electron populations 1.25116 0.96378 1.03937 1.01140 1.23475 0.95054 0.97328 0.99613 1.18337 0.84432 0.94566 0.91597 1.43887 1.56256 1.10390 1.06589 1.19513 1.29551 0.89031 1.09805 0.90945 1.25916 0.95255 1.01319 0.97373 1.70173 1.18060 1.41932 1.20549 0.85148 0.78298 0.77872 0.78284 1.18770 1.20657 1.20491 1.20796 0.83016 0.90400 0.82006 1.90520 1.52453 1.64954 1.42867 1.20688 1.04526 0.93380 0.94503 1.19812 0.94475 0.94514 0.94627 1.21076 0.99926 1.00720 0.93163 1.21229 0.97003 0.95448 0.95382 1.19932 0.96323 1.07054 0.93344 1.18356 0.82810 0.75840 0.87708 1.43513 1.13809 1.66804 1.14979 1.90774 1.44180 1.55964 1.56390 1.21539 0.98529 0.96823 0.92045 1.21254 0.96438 0.99307 0.96964 0.75391 0.89293 0.87639 0.91942 0.85685 0.88264 0.85989 0.85465 0.74988 0.75372 0.81443 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.44 19.25 74.32 1.43 -8.01 16 2 C -0.15 -6.39 10.75 31.13 0.33 -6.06 16 3 C 0.23 9.54 4.91 84.57 0.42 9.96 16 4 N -0.45 -22.05 2.60 -645.39 -1.68 -23.72 16 5 C -0.35 -19.31 9.28 84.04 0.78 -18.53 16 6 H 0.07 4.33 7.42 -2.91 -0.02 4.31 16 7 C 0.01 0.26 4.83 84.93 0.41 0.67 16 8 N -0.87 -44.53 9.59 21.67 0.21 -44.32 16 9 Si 0.98 41.42 29.60 68.60 2.03 43.45 16 10 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 13 C 0.45 20.75 7.56 87.66 0.66 21.42 16 14 O -0.62 -34.17 15.70 -3.06 -0.05 -34.22 16 15 C -0.09 -3.02 4.43 29.10 0.13 -2.89 16 16 C -0.03 -1.06 4.38 -19.81 -0.09 -1.15 16 17 C -0.13 -4.26 9.68 22.23 0.22 -4.05 16 18 C -0.07 -2.22 9.60 22.53 0.22 -2.01 16 19 C -0.16 -4.39 5.87 -20.09 -0.12 -4.51 16 20 C 0.57 14.51 8.05 86.79 0.70 15.21 16 21 N -0.83 -11.86 8.82 -175.60 -1.55 -13.41 16 22 O -0.59 -20.22 17.18 -3.89 -0.07 -20.29 16 23 C -0.07 -1.55 9.54 22.53 0.21 -1.33 16 24 C -0.12 -3.16 9.68 22.23 0.22 -2.94 16 25 H 0.23 6.84 7.80 -4.41 -0.03 6.80 16 26 H 0.09 3.91 6.60 -2.39 -0.02 3.90 16 27 H 0.11 3.29 6.70 -2.39 -0.02 3.28 16 28 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 29 H 0.13 3.20 7.36 -2.39 -0.02 3.18 16 30 H 0.10 3.17 7.43 -2.39 -0.02 3.16 16 31 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 32 H 0.13 3.94 7.65 -2.91 -0.02 3.92 16 33 H 0.42 3.23 6.86 -92.72 -0.64 2.60 16 34 H 0.41 4.60 8.93 -92.70 -0.83 3.77 16 35 H 0.17 1.96 6.41 -2.91 -0.02 1.94 16 36 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -76.70 320.21 4.09 -72.61 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -0.32 Total: 24.13 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.52 Total: -4.22 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -3.02 Total: -81.46 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -0.12 Total: -54.51 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -76.70 4.09 -72.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.458 kcal (2) G-P(sol) polarization free energy of solvation -76.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds