Wall clock time and date at job start Tue Mar 31 2020 03:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47535 * 37.72430 * 3 2 1 5 5 C 1.37101 * 119.99853 * 269.99907 * 4 3 2 6 6 H 1.07998 * 120.00177 * 202.66901 * 5 4 3 7 7 C 1.38955 * 120.00150 * 22.67504 * 5 4 3 8 8 N 1.31408 * 119.99799 * 352.43642 * 7 5 4 9 9 Si 1.86800 * 120.00118 * 172.43954 * 7 5 4 10 10 H 1.48507 * 109.46727 * 59.99988 * 9 7 5 11 11 H 1.48501 * 109.47025 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47217 * 300.00017 * 9 7 5 13 13 C 1.34774 * 120.00081 * 89.99634 * 4 3 2 14 14 O 1.21292 * 119.99987 * 5.10885 * 13 4 3 15 15 C 1.50701 * 119.99946 * 185.10595 * 13 4 3 16 16 N 1.46502 * 109.47283 * 174.66183 * 15 13 4 17 17 C 1.34773 * 120.00269 * 179.97438 * 16 15 13 18 18 O 1.21553 * 119.99953 * 359.97438 * 17 16 15 19 19 C 1.47844 * 120.00247 * 180.02562 * 17 16 15 20 20 C 1.39568 * 120.14385 * 180.02562 * 19 17 16 21 21 C 1.37965 * 119.85270 * 179.97438 * 20 19 17 22 22 C 1.38363 * 120.14195 * 0.02562 * 21 20 19 23 23 C 1.38361 * 120.29185 * 359.97438 * 22 21 20 24 24 C 1.37954 * 120.14657 * 0.02562 * 23 22 21 25 25 H 4.40642 * 5.51344 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.46770 * 277.72209 * 3 2 1 27 27 H 1.08999 * 109.46569 * 157.72544 * 3 2 1 28 28 H 0.97002 * 120.00255 * 185.01746 * 8 7 5 29 29 H 1.08993 * 109.47522 * 54.66073 * 15 13 4 30 30 H 1.09004 * 109.47167 * 294.65733 * 15 13 4 31 31 H 0.96998 * 119.99750 * 0.02562 * 16 15 13 32 32 H 1.07998 * 120.08034 * 359.69929 * 20 19 17 33 33 H 1.07993 * 119.93252 * 179.97438 * 21 20 19 34 34 H 1.08006 * 119.85081 * 179.97438 * 22 21 20 35 35 H 1.08003 * 119.92467 * 180.02562 * 23 22 21 36 36 H 1.08000 * 120.07066 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.0915 -0.8451 5 6 3.3641 -2.3291 -0.3013 6 1 4.0434 -3.0146 -0.7861 7 6 2.7221 -2.7015 0.8734 8 7 2.0136 -1.8202 1.5428 9 14 2.8664 -4.4550 1.5012 10 1 4.2943 -4.7735 1.7561 11 1 2.0958 -4.5940 2.7630 12 1 2.3244 -5.3911 0.4839 13 6 3.3595 -0.8798 -2.1570 14 8 3.2461 0.2357 -2.6194 15 6 3.7514 -2.0292 -3.0494 16 7 3.8125 -1.5696 -4.4392 17 6 4.1459 -2.4317 -5.4200 18 8 4.3963 -3.5904 -5.1516 19 6 4.2081 -1.9677 -6.8224 20 6 4.5525 -2.8581 -7.8406 21 6 4.6082 -2.4188 -9.1472 22 6 4.3240 -1.0988 -9.4492 23 6 3.9820 -0.2111 -8.4445 24 6 3.9226 -0.6374 -7.1339 25 1 -1.0498 -0.0002 -0.0004 26 1 3.0094 -0.1373 1.0184 27 1 3.0089 0.9518 -0.3895 28 1 1.6258 -2.0592 2.3992 29 1 3.0123 -2.8254 -2.9623 30 1 4.7288 -2.4062 -2.7482 31 1 3.6138 -0.6447 -4.6533 32 1 4.7792 -3.8875 -7.6057 33 1 4.8749 -3.1066 -9.9360 34 1 4.3695 -0.7599 -10.4737 35 1 3.7610 0.8179 -8.6870 36 1 3.6559 0.0566 -6.3506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491021514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:04 Heat of formation + Delta-G solvation = 10.347590 kcal Electronic energy + Delta-G solvation = -21363.427038 eV Core-core repulsion = 18007.228308 eV Total energy + Delta-G solvation = -3356.198731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40732 -40.49737 -39.13888 -37.26706 -35.56309 -33.74528 -33.42011 -32.33319 -31.86381 -29.58969 -27.79617 -26.27108 -24.47660 -23.35344 -21.50016 -21.33605 -20.01420 -19.21369 -18.35170 -17.88158 -17.10434 -16.88578 -16.79082 -16.26433 -16.03475 -15.81526 -15.52354 -15.38174 -14.69562 -14.65109 -14.41317 -14.14192 -13.83370 -13.64163 -13.24427 -13.11234 -12.93615 -12.60155 -12.58823 -12.17152 -12.01017 -11.42856 -11.18834 -11.15295 -10.62535 -10.45502 -10.33784 -9.94743 -9.93446 -9.87478 -8.27612 -6.05520 -0.14428 0.42263 1.38750 1.46389 1.54692 1.71594 1.81489 1.91843 2.18045 2.30308 2.42030 2.90674 3.05300 3.10857 3.65070 3.89740 3.92913 4.03950 4.13976 4.26373 4.40629 4.48224 4.50144 4.55373 4.77329 4.86513 5.07279 5.10139 5.19492 5.36923 5.39800 5.42162 5.46008 5.50922 5.69448 5.96545 6.30497 6.44819 6.99890 7.05906 7.12208 7.38494 7.75877 8.64491 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.022363 B = 0.003942 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.753862 B = 7101.280867 C = 8048.245036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.136 4.136 3 C 0.239 3.761 4 N -0.439 5.439 5 C -0.367 4.367 6 H 0.110 0.890 7 C 0.007 3.993 8 N -0.876 5.876 9 Si 0.989 3.011 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.446 3.554 14 O -0.622 6.622 15 C 0.131 3.869 16 N -0.704 5.704 17 C 0.552 3.448 18 O -0.580 6.580 19 C -0.155 4.155 20 C -0.077 4.077 21 C -0.127 4.127 22 C -0.087 4.087 23 C -0.127 4.127 24 C -0.094 4.094 25 H 0.234 0.766 26 H 0.113 0.887 27 H 0.064 0.936 28 H 0.273 0.727 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.413 0.587 32 H 0.126 0.874 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 1.277 -15.570 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.156 5.156 5 C -0.494 4.494 6 H 0.127 0.873 7 C -0.197 4.197 8 N -0.513 5.513 9 Si 0.813 3.187 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.235 3.765 14 O -0.511 6.511 15 C 0.004 3.996 16 N -0.358 5.358 17 C 0.341 3.659 18 O -0.462 6.462 19 C -0.158 4.158 20 C -0.096 4.096 21 C -0.145 4.145 22 C -0.105 4.105 23 C -0.145 4.145 24 C -0.113 4.113 25 H 0.250 0.750 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.252 0.748 32 H 0.144 0.856 33 H 0.175 0.825 34 H 0.181 0.819 35 H 0.174 0.826 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.683 1.014 -15.346 15.612 hybrid contribution -0.363 -0.481 1.061 1.220 sum 2.320 0.533 -14.285 14.482 Atomic orbital electron populations 1.25100 0.96345 1.03329 1.03826 1.23490 0.95072 0.97663 0.97524 1.18231 0.84533 0.88680 0.96889 1.43766 1.55380 1.10822 1.05621 1.19991 1.27103 0.91697 1.10568 0.87284 1.26142 0.93790 1.02779 0.96991 1.70066 1.32178 1.35058 1.13977 0.85034 0.78876 0.77437 0.77350 1.18724 1.20621 1.19888 1.20392 0.83296 0.89770 0.83051 1.90484 1.60432 1.25436 1.74765 1.20687 1.03007 0.95281 0.80597 1.45712 1.69413 1.14736 1.05954 1.18827 0.76054 0.84831 0.86189 1.90721 1.51677 1.19168 1.84650 1.19866 1.08055 0.96239 0.91623 1.21400 0.95882 0.99482 0.92805 1.21495 1.00110 0.97316 0.95560 1.21841 0.94823 0.92806 1.00999 1.21496 0.99718 1.01737 0.91546 1.21565 0.97163 0.93799 0.98726 0.74992 0.86908 0.91791 0.91659 0.89717 0.89195 0.74802 0.85589 0.82490 0.81938 0.82613 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.67 19.25 74.32 1.43 -10.24 16 2 C -0.14 -6.62 11.37 31.12 0.35 -6.26 16 3 C 0.24 11.65 5.21 84.58 0.44 12.10 16 4 N -0.44 -21.79 2.58 -645.42 -1.67 -23.46 16 5 C -0.37 -18.08 9.01 84.04 0.76 -17.32 16 6 H 0.11 5.09 6.72 -2.91 -0.02 5.07 16 7 C 0.01 0.34 5.40 84.93 0.46 0.80 16 8 N -0.88 -43.79 8.37 21.66 0.18 -43.61 16 9 Si 0.99 39.11 29.56 68.60 2.03 41.14 16 10 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 11 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 12 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 13 C 0.45 21.08 7.68 87.66 0.67 21.75 16 14 O -0.62 -30.79 15.24 -3.07 -0.05 -30.83 16 15 C 0.13 5.48 4.70 85.63 0.40 5.89 16 16 N -0.70 -26.13 5.48 -469.71 -2.57 -28.70 16 17 C 0.55 20.05 7.77 86.79 0.67 20.72 16 18 O -0.58 -24.62 16.35 -3.88 -0.06 -24.69 16 19 C -0.15 -4.43 5.87 -20.09 -0.12 -4.55 16 20 C -0.08 -1.88 9.60 22.53 0.22 -1.67 16 21 C -0.13 -2.13 10.03 22.23 0.22 -1.91 16 22 C -0.09 -1.22 10.04 22.33 0.22 -0.99 16 23 C -0.13 -2.14 10.03 22.23 0.22 -1.91 16 24 C -0.09 -2.19 9.54 22.53 0.21 -1.98 16 25 H 0.23 7.90 7.80 -4.43 -0.03 7.87 16 26 H 0.11 5.66 6.29 -2.38 -0.02 5.64 16 27 H 0.06 3.04 7.36 -2.39 -0.02 3.02 16 28 H 0.27 13.09 8.32 -92.71 -0.77 12.32 16 29 H 0.08 3.69 8.03 -2.39 -0.02 3.67 16 30 H 0.09 3.68 7.75 -2.38 -0.02 3.67 16 31 H 0.41 14.43 5.49 -92.71 -0.51 13.93 16 32 H 0.13 3.24 7.65 -2.91 -0.02 3.21 16 33 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 36 H 0.13 2.95 6.41 -2.91 -0.02 2.93 16 Total: -1.00 -64.37 320.39 4.64 -59.73 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.61 Total: 36.00 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 6.18 Total: 14.42 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -4.06 Total: -95.76 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -0.11 Total: -55.52 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -64.37 4.64 -59.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491021514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.079 kcal (2) G-P(sol) polarization free energy of solvation -64.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds