Wall clock time and date at job start Tue Mar 31 2020 03:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40030 * 120.97562 * 82.59198 * 3 2 1 5 5 C 1.37901 * 119.07698 * 179.97438 * 4 3 2 6 6 N 1.31945 * 121.12362 * 0.02562 * 5 4 3 7 7 C 1.31653 * 122.18779 * 359.97438 * 6 5 4 8 8 C 1.39048 * 120.77007 * 359.97438 * 7 6 5 9 9 N 1.39071 * 120.60014 * 179.97438 * 8 7 6 10 10 C 1.46901 * 111.00158 * 64.30130 * 9 8 7 11 11 C 1.53233 * 109.34102 * 172.74656 * 10 9 8 12 12 N 1.47077 * 108.52589 * 53.82959 * 11 10 9 13 13 C 1.34779 * 120.88232 * 128.83550 * 12 11 10 14 14 O 1.21690 * 119.99308 * 174.81312 * 13 12 11 15 15 C 1.46368 * 120.00092 * 354.81059 * 13 12 11 16 16 H 1.08002 * 119.99849 * 351.62484 * 15 13 12 17 17 C 1.40047 * 119.99718 * 171.62110 * 15 13 12 18 18 N 1.30672 * 120.00585 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99872 * 179.97438 * 17 15 13 20 20 H 1.48510 * 109.46941 * 60.00440 * 19 17 15 21 21 H 1.48503 * 109.47200 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47320 * 300.00334 * 19 17 15 23 23 C 1.47081 * 118.23240 * 308.82083 * 12 11 10 24 24 C 1.46899 * 110.99971 * 300.00094 * 9 8 7 25 25 H 1.07998 * 120.46010 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.43349 * 180.27649 * 5 4 3 27 27 H 1.08003 * 119.61618 * 179.97438 * 7 6 5 28 28 H 1.09009 * 109.49445 * 292.70697 * 10 9 8 29 29 H 1.08998 * 109.49389 * 52.78191 * 10 9 8 30 30 H 1.09004 * 109.62860 * 294.11628 * 11 10 9 31 31 H 1.09004 * 109.63077 * 173.53929 * 11 10 9 32 32 H 0.96996 * 120.00230 * 179.97438 * 18 17 15 33 33 H 1.08998 * 109.62469 * 291.46725 * 23 12 11 34 34 H 1.09003 * 109.62785 * 170.89205 * 23 12 11 35 35 H 1.08998 * 109.49071 * 307.21157 * 24 9 8 36 36 H 1.08998 * 109.49339 * 67.26528 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2888 -0.1538 -1.1906 5 6 4.6671 -0.1468 -1.1453 6 7 5.3112 0.0020 -0.0035 7 6 4.6812 0.1507 1.1429 8 6 3.2917 0.1575 1.1954 9 7 2.6298 0.3143 2.4084 10 6 2.9022 1.6356 2.9898 11 6 2.0184 1.8386 4.2249 12 7 2.2229 0.7035 5.1375 13 6 2.5133 0.9051 6.4381 14 8 2.5862 -0.0417 7.1991 15 6 2.7410 2.2629 6.9352 16 1 2.8107 3.0874 6.2411 17 6 2.8683 2.4927 8.3108 18 7 2.7844 1.4951 9.1505 19 14 3.1596 4.2254 8.9452 20 1 2.0287 5.0980 8.5389 21 1 3.2584 4.2001 10.4267 22 1 4.4238 4.7556 8.3743 23 6 2.1018 -0.6575 4.5932 24 6 2.9824 -0.7623 3.3436 25 1 2.7725 -0.2768 -2.1311 26 1 5.2287 -0.2610 -2.0607 27 1 5.2502 0.2689 2.0533 28 1 3.9514 1.6964 3.2793 29 1 2.6823 2.4091 2.2540 30 1 0.9718 1.8819 3.9232 31 1 2.2965 2.7659 4.7259 32 1 2.8730 1.6543 10.1032 33 1 1.0633 -0.8542 4.3269 34 1 2.4350 -1.3806 5.3377 35 1 2.8205 -1.7278 2.8644 36 1 4.0305 -0.6684 3.6277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000557746512.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:11 Heat of formation + Delta-G solvation = 55.586132 kcal Electronic energy + Delta-G solvation = -21958.484654 eV Core-core repulsion = 18636.540365 eV Total energy + Delta-G solvation = -3321.944289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.99728 -38.76772 -36.81072 -36.61533 -33.85821 -32.73302 -32.54844 -30.88567 -30.22493 -27.02679 -25.80788 -24.94825 -23.21702 -23.00988 -20.92831 -19.55732 -18.99318 -17.27428 -16.91084 -16.22771 -15.57616 -15.37458 -15.26800 -14.61564 -14.50003 -14.26817 -14.16771 -14.05582 -13.33879 -13.30711 -13.30044 -13.05955 -12.58520 -12.18322 -11.99663 -11.56498 -11.39800 -11.18250 -10.97694 -10.87693 -10.75546 -10.30389 -10.21202 -10.12424 -9.98043 -9.25692 -8.91183 -8.54750 -7.66659 -7.32465 -6.26116 -4.71204 0.35247 0.66511 2.55969 2.86766 3.11667 3.17205 3.18434 3.49121 3.57211 3.57934 4.03390 4.15351 4.45183 4.50107 4.55962 4.60932 4.81296 5.12102 5.27460 5.31464 5.33526 5.48211 5.51286 5.64580 5.66953 5.72307 5.90711 6.04555 6.14130 6.33729 6.41330 6.58456 6.87882 7.06704 7.36230 7.39059 7.49299 7.57189 8.04238 8.27294 8.95954 9.34704 10.50377 10.68691 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.004043 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.189003 B = 6923.479841 C = 7127.939413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.264 3.736 3 C 0.034 3.966 4 C -0.123 4.123 5 C 0.092 3.908 6 N -0.459 5.459 7 C 0.081 3.919 8 C 0.097 3.903 9 N -0.508 5.508 10 C 0.046 3.954 11 C 0.128 3.872 12 N -0.644 5.644 13 C 0.561 3.439 14 O -0.577 6.577 15 C -0.546 4.546 16 H 0.072 0.928 17 C 0.089 3.911 18 N -0.768 5.768 19 Si 0.906 3.094 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.267 1.267 23 C 0.126 3.874 24 C 0.049 3.951 25 H 0.147 0.853 26 H 0.166 0.834 27 H 0.164 0.836 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.270 0.730 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.816 -0.578 -18.948 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.073 5.073 2 C -0.052 4.052 3 C 0.022 3.978 4 C -0.145 4.145 5 C -0.064 4.064 6 N -0.168 5.168 7 C -0.080 4.080 8 C -0.003 4.003 9 N -0.231 5.231 10 C -0.081 4.081 11 C 0.003 3.997 12 N -0.383 5.383 13 C 0.367 3.633 14 O -0.459 6.459 15 C -0.582 4.582 16 H 0.090 0.910 17 C -0.131 4.131 18 N -0.397 5.397 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.192 1.192 23 C 0.002 3.998 24 C -0.078 4.078 25 H 0.165 0.835 26 H 0.183 0.817 27 H 0.181 0.819 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.500 -1.203 -18.352 18.560 hybrid contribution 0.439 0.944 0.343 1.096 sum 2.940 -0.258 -18.009 18.249 Atomic orbital electron populations 1.81226 1.11764 1.06932 1.07377 1.25077 0.92048 0.94554 0.93520 1.16330 0.85420 1.02463 0.93555 1.22222 0.95585 0.99243 0.97490 1.22717 0.91017 0.96134 0.96532 1.67508 1.41468 1.09290 0.98520 1.23526 0.91579 0.96037 0.96839 1.19936 0.91664 0.97132 0.91563 1.59397 1.57056 1.04757 1.01864 1.22728 0.99851 0.87969 0.97527 1.21503 0.97509 0.92371 0.88284 1.48286 1.76631 1.03298 1.10093 1.18257 0.76210 0.90660 0.78180 1.90597 1.56636 1.44373 1.54296 1.20894 1.52878 0.92313 0.92130 0.90973 1.25711 0.92678 0.97924 0.96814 1.69984 1.35113 1.31564 1.03004 0.86453 0.79575 0.82878 0.78000 1.19213 1.20516 1.19219 1.21197 0.97739 0.88104 0.92786 1.22681 0.99166 0.92746 0.93191 0.83537 0.81706 0.81929 0.93263 0.90393 0.93063 0.88050 0.91931 0.93119 0.89071 0.90442 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.88 18.54 41.84 0.78 -5.11 16 2 C 0.26 3.31 14.95 -22.47 -0.34 2.98 16 3 C 0.03 0.36 5.78 -106.40 -0.62 -0.26 16 4 C -0.12 -0.89 9.86 -39.03 -0.38 -1.27 16 5 C 0.09 0.68 11.16 -17.63 -0.20 0.48 16 6 N -0.46 -4.70 10.32 -13.14 -0.14 -4.84 16 7 C 0.08 0.87 9.92 -17.33 -0.17 0.70 16 8 C 0.10 1.11 4.67 -83.38 -0.39 0.73 16 9 N -0.51 -7.00 4.05 -170.43 -0.69 -7.69 16 10 C 0.05 0.65 5.31 -3.70 -0.02 0.63 16 11 C 0.13 2.28 6.52 -3.61 -0.02 2.26 16 12 N -0.64 -14.08 3.01 -174.13 -0.52 -14.60 16 13 C 0.56 15.44 7.61 -12.99 -0.10 15.34 16 14 O -0.58 -18.19 14.55 5.20 0.08 -18.12 16 15 C -0.55 -14.73 8.84 -35.64 -0.32 -15.05 16 16 H 0.07 1.75 5.74 -52.49 -0.30 1.45 16 17 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 18 N -0.77 -22.52 11.86 55.55 0.66 -21.87 16 19 Si 0.91 19.52 29.56 -169.99 -5.02 14.49 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 C 0.13 2.39 6.58 -3.60 -0.02 2.36 16 24 C 0.05 0.72 5.25 -3.70 -0.02 0.70 16 25 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 26 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 27 H 0.16 1.74 7.20 -52.48 -0.38 1.36 16 28 H 0.05 0.70 7.63 -51.92 -0.40 0.31 16 29 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.85 5.39 -51.93 -0.28 1.57 16 32 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.90 7.10 -51.93 -0.37 1.53 16 35 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 36 H 0.05 0.70 7.41 -51.93 -0.38 0.32 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -34.39 312.48 -6.62 -41.01 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -3.77 Total: 0.10 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -2.69 Total: 11.91 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.08 Total: -54.10 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.08 Total: -18.12 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.39 -6.62 -41.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557746512.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.592 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds