Wall clock time and date at job start Tue Mar 31 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48494 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47410 * 300.00315 * 3 2 1 6 6 H 1.48509 * 109.46989 * 60.00294 * 3 2 1 7 7 C 1.37878 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99276 * 185.76296 * 7 2 1 9 9 C 1.50696 * 119.99926 * 5.49164 * 7 2 1 10 10 C 1.53007 * 115.54836 * 279.69239 * 9 7 2 11 11 N 1.46501 * 109.47103 * 294.83262 * 10 9 7 12 12 C 1.34774 * 119.99740 * 176.92553 * 11 10 9 13 13 O 1.21583 * 120.00318 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99851 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00330 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.96012 * 34.29783 * 15 14 12 17 17 C 1.53849 * 109.97798 * 155.54633 * 15 14 12 18 18 C 1.54279 * 108.92312 * 166.61669 * 17 15 14 19 19 S 1.83092 * 104.65207 * 332.04497 * 18 17 15 20 20 O 1.42101 * 109.46884 * 116.04450 * 19 18 17 21 21 C 1.55136 * 109.97095 * 273.05683 * 15 14 12 22 22 C 1.53005 * 117.49835 * 133.98874 * 9 7 2 23 23 C 1.53001 * 117.50036 * 65.36394 * 9 7 2 24 24 H 0.97000 * 120.00361 * 5.01097 * 1 2 3 25 25 H 1.08998 * 109.47037 * 54.83697 * 10 9 7 26 26 H 1.09001 * 109.46778 * 174.83519 * 10 9 7 27 27 H 0.97005 * 119.99960 * 356.93070 * 11 10 9 28 28 H 0.97005 * 119.99849 * 0.02562 * 14 12 11 29 29 H 1.08998 * 109.60905 * 286.53621 * 17 15 14 30 30 H 1.09007 * 109.60948 * 46.70077 * 17 15 14 31 31 H 1.08996 * 110.39669 * 90.84441 * 18 17 15 32 32 H 1.09000 * 110.39747 * 213.25405 * 18 17 15 33 33 H 1.08997 * 110.86170 * 316.68855 * 21 15 14 34 34 H 1.09001 * 110.86221 * 80.34470 * 21 15 14 35 35 H 1.09002 * 117.49579 * 359.97438 * 22 9 7 36 36 H 1.09000 * 117.49935 * 145.01894 * 22 9 7 37 37 H 1.08997 * 117.49983 * 214.97572 * 23 9 7 38 38 H 1.08996 * 117.49736 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0804 -1.1963 0.0934 9 6 1.2563 -2.4961 -0.1260 10 6 0.6150 -3.0154 1.1625 11 7 1.6635 -3.3493 2.1296 12 6 1.3306 -3.7702 3.3659 13 8 0.1601 -3.8732 3.6784 14 7 2.2952 -4.0768 4.2559 15 6 1.9334 -4.5348 5.5996 16 1 1.0199 -5.1279 5.5571 17 6 3.0775 -5.3738 6.1947 18 6 2.8290 -5.5580 7.7062 19 16 1.8663 -4.0811 8.2006 20 8 0.5769 -4.4825 8.6429 21 6 1.7309 -3.3163 6.5381 22 6 1.8008 -3.5317 -1.1119 23 6 0.5189 -2.7634 -1.4397 24 1 -0.4851 0.8368 -0.0734 25 1 -0.0339 -2.2462 1.5810 26 1 0.0270 -3.9064 0.9421 27 1 2.5974 -3.2673 1.8802 28 1 3.2290 -3.9942 4.0067 29 1 3.1082 -6.3483 5.7076 30 1 4.0265 -4.8602 6.0400 31 1 2.2535 -6.4654 7.8887 32 1 3.7756 -5.5925 8.2454 33 1 2.5160 -2.5754 6.3872 34 1 0.7453 -2.8741 6.3930 35 1 2.7001 -3.2710 -1.6700 36 1 1.7024 -4.5833 -0.8427 37 1 -0.4228 -3.3096 -1.3861 38 1 0.5747 -1.9973 -2.2130 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579788870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:50 Heat of formation + Delta-G solvation = -76.007611 kcal Electronic energy + Delta-G solvation = -20562.716856 eV Core-core repulsion = 17338.217434 eV Total energy + Delta-G solvation = -3224.499422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09622 -38.72900 -37.53841 -36.86500 -35.03752 -34.00983 -33.49464 -30.04066 -28.04638 -27.09031 -25.35071 -23.01181 -22.15329 -21.80602 -21.23953 -19.38292 -18.58156 -18.04803 -17.43495 -16.87011 -16.68299 -16.31361 -16.11802 -15.65182 -15.20345 -15.06492 -14.79584 -14.53468 -14.48453 -14.20247 -13.64305 -13.45089 -13.21239 -12.99701 -12.79872 -12.70312 -12.48958 -12.31540 -12.05371 -11.80030 -11.56974 -11.39208 -11.16605 -10.82647 -10.48835 -10.38560 -10.07249 -9.70327 -9.25141 -8.10082 -6.23360 0.75834 1.42358 1.42610 1.45689 1.55353 1.83778 2.18313 2.43783 2.84497 3.19509 3.31381 3.57754 3.60762 3.76175 3.98440 4.08908 4.23912 4.28255 4.54313 4.64460 4.66094 4.71182 4.85558 4.97490 4.99487 5.02993 5.08798 5.13560 5.25404 5.48892 5.56222 5.59973 5.68950 5.79305 6.13432 6.36060 6.84843 7.23507 7.47109 7.65442 8.98596 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.003834 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.977740 B = 7301.830869 C = 7897.493934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.951 3.049 4 H -0.256 1.256 5 H -0.285 1.285 6 H -0.291 1.291 7 C -0.498 4.498 8 H 0.068 0.932 9 C 0.007 3.993 10 C 0.197 3.803 11 N -0.710 5.710 12 C 0.693 3.307 13 O -0.655 6.655 14 N -0.717 5.717 15 C 0.151 3.849 16 H 0.042 0.958 17 C -0.111 4.111 18 C -0.418 4.418 19 S 1.295 4.705 20 O -0.933 6.933 21 C -0.447 4.447 22 C -0.171 4.171 23 C -0.167 4.167 24 H 0.257 0.743 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.409 0.591 28 H 0.417 0.583 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.081 0.919 32 H 0.181 0.819 33 H 0.162 0.838 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.036 -8.154 14.015 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.777 3.223 4 H -0.180 1.180 5 H -0.211 1.211 6 H -0.218 1.218 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.006 3.994 10 C 0.072 3.928 11 N -0.363 5.363 12 C 0.392 3.608 13 O -0.538 6.538 14 N -0.374 5.374 15 C 0.044 3.956 16 H 0.060 0.940 17 C -0.149 4.149 18 C -0.557 4.557 19 S 1.495 4.505 20 O -0.929 6.929 21 C -0.585 4.585 22 C -0.208 4.208 23 C -0.205 4.205 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.245 0.755 28 H 0.255 0.745 29 H 0.101 0.899 30 H 0.149 0.851 31 H 0.100 0.900 32 H 0.198 0.802 33 H 0.179 0.821 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.436 -7.811 15.291 22.433 hybrid contribution -1.089 -0.063 -2.163 2.423 sum 13.347 -7.875 13.128 20.310 Atomic orbital electron populations 1.70151 1.07486 1.27318 1.49930 1.25745 0.95374 1.02287 0.94474 0.85618 0.79697 0.79996 0.76977 1.17995 1.21142 1.21762 1.20714 0.92959 0.89410 1.50494 0.91414 1.19057 0.99376 0.94473 0.86515 1.20409 0.88364 0.95356 0.88686 1.44843 1.10965 1.69536 1.10990 1.16309 0.84974 0.78204 0.81294 1.90859 1.20047 1.63037 1.79825 1.44774 1.08665 1.71952 1.12054 1.21936 0.98897 0.93359 0.81434 0.93959 1.22142 0.98529 1.01035 0.93204 1.27923 1.12994 1.13460 1.01333 1.69786 0.94061 0.97303 0.89383 1.93017 1.43339 1.83097 1.73433 1.28855 1.07551 1.05929 1.16139 1.22978 0.96978 0.95971 1.04869 1.22489 0.94595 1.02130 1.01311 0.93374 0.95549 0.95589 0.75476 0.74452 0.89931 0.85102 0.89981 0.80175 0.82056 0.92003 0.89053 0.89372 0.91433 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.27 13.10 21.45 0.28 -51.98 16 2 C 0.02 1.13 5.42 84.65 0.46 1.59 16 3 Si 0.95 41.70 29.54 68.60 2.03 43.73 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.50 -24.99 8.67 25.60 0.22 -24.77 16 8 H 0.07 3.23 7.82 -2.91 -0.02 3.20 16 9 C 0.01 0.31 1.29 -52.92 -0.07 0.24 16 10 C 0.20 9.39 5.50 86.38 0.48 9.86 16 11 N -0.71 -27.71 5.47 -478.53 -2.62 -30.33 16 12 C 0.69 27.34 8.56 179.06 1.53 28.87 16 13 O -0.65 -33.36 16.01 -3.98 -0.06 -33.43 16 14 N -0.72 -18.75 5.13 -452.96 -2.32 -21.08 16 15 C 0.15 3.63 2.89 46.01 0.13 3.76 16 16 H 0.04 1.43 7.58 -2.39 -0.02 1.41 16 17 C -0.11 -1.26 5.91 31.31 0.19 -1.08 16 18 C -0.42 -3.87 7.32 72.42 0.53 -3.34 16 19 S 1.29 19.48 14.67 -56.49 -0.83 18.65 16 20 O -0.93 -30.72 18.15 -148.98 -2.70 -33.43 16 21 C -0.45 -9.67 7.02 72.71 0.51 -9.16 16 22 C -0.17 -6.61 9.96 30.60 0.30 -6.30 16 23 C -0.17 -7.56 9.68 30.60 0.30 -7.27 16 24 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 25 H 0.03 1.51 8.13 -2.39 -0.02 1.49 16 26 H 0.03 1.24 8.09 -2.39 -0.02 1.22 16 27 H 0.41 13.41 8.44 -92.70 -0.78 12.63 16 28 H 0.42 7.15 8.61 -92.70 -0.80 6.35 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.13 0.44 8.10 -2.38 -0.02 0.42 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.18 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.16 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -88.26 333.97 -2.15 -90.41 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.50 Total: 25.03 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 4.58 Total: -7.58 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.66 Total: -103.39 kcal Atomic # 8 Polarization: -64.09 SS G_CDS: -2.77 Total: -66.86 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 19.48 SS G_CDS: -0.83 Total: 18.65 kcal Total: -88.26 -2.15 -90.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579788870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.404 kcal (2) G-P(sol) polarization free energy of solvation -88.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds