Wall clock time and date at job start Tue Mar 31 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30183 * 126.80226 * 2 1 4 4 O 1.20915 * 111.60687 * 179.97438 * 3 2 1 5 5 C 1.34044 * 111.56856 * 359.97438 * 4 3 2 6 6 C 1.35451 * 106.44411 * 0.02562 * 5 4 3 7 7 S 1.76203 * 128.00692 * 179.97438 * 6 5 4 8 8 O 1.42107 * 106.39959 * 358.30428 * 7 6 5 9 9 O 1.42096 * 106.39957 * 131.22391 * 7 6 5 10 10 N 1.65594 * 107.21791 * 244.76652 * 7 6 5 11 11 C 1.46501 * 120.00306 * 65.91301 * 10 7 6 12 12 C 1.52998 * 109.47285 * 164.28814 * 11 10 7 13 13 C 1.50702 * 115.54697 * 59.15867 * 12 11 10 14 14 H 1.08001 * 120.00361 * 264.67621 * 13 12 11 15 15 C 1.37878 * 119.99980 * 84.68408 * 13 12 11 16 16 N 1.31517 * 120.00122 * 1.97676 * 15 13 12 17 17 Si 1.86799 * 120.00202 * 181.98144 * 15 13 12 18 18 H 1.48504 * 109.47262 * 89.99308 * 17 15 13 19 19 H 1.48499 * 109.47341 * 209.99788 * 17 15 13 20 20 H 1.48507 * 109.46744 * 329.99530 * 17 15 13 21 21 C 1.52993 * 117.50209 * 273.48803 * 12 11 10 22 22 C 1.52998 * 117.50148 * 204.82672 * 12 11 10 23 23 H 1.09005 * 109.47127 * 85.72574 * 1 2 3 24 24 H 1.09004 * 109.46801 * 205.72079 * 1 2 3 25 25 H 1.09003 * 109.47362 * 325.71928 * 1 2 3 26 26 H 1.08001 * 126.77755 * 180.02562 * 5 4 3 27 27 H 0.97006 * 119.99934 * 245.90742 * 10 7 6 28 28 H 1.09000 * 109.46931 * 284.28906 * 11 10 7 29 29 H 1.08993 * 109.47019 * 44.28635 * 11 10 7 30 30 H 0.97002 * 119.99849 * 185.02543 * 16 15 13 31 31 H 1.09004 * 117.49919 * 0.02562 * 21 12 11 32 32 H 1.09001 * 117.50108 * 145.01824 * 21 12 11 33 33 H 1.08996 * 117.50264 * 214.97844 * 22 12 11 34 34 H 1.09003 * 117.49841 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 0.0005 5 6 3.6025 -0.6067 0.0015 6 6 2.3540 -1.1320 0.0010 7 16 1.8923 -2.8324 0.0011 8 8 3.1022 -3.5767 -0.0384 9 8 0.9197 -2.9840 1.0259 10 7 1.1138 -3.1291 -1.4300 11 6 1.8474 -3.0407 -2.6950 12 6 1.0409 -3.7239 -3.8012 13 6 -0.3334 -3.1569 -4.0483 14 1 -1.1951 -3.6036 -3.5745 15 6 -0.4907 -2.0680 -4.8793 16 7 0.5534 -1.5482 -5.4869 17 14 -2.1869 -1.3309 -5.1420 18 1 -2.4315 -0.2768 -4.1249 19 1 -2.2629 -0.7354 -6.5003 20 1 -3.2147 -2.3946 -5.0096 21 6 1.2260 -5.2318 -3.9819 22 6 1.8116 -4.2599 -5.0093 23 1 -0.3633 0.0766 -1.0248 24 1 -0.3633 -0.9259 0.4460 25 1 -0.3634 0.8492 0.5788 26 1 4.5339 -1.1533 0.0025 27 1 0.1720 -3.3617 -1.4307 28 1 2.0024 -1.9929 -2.9526 29 1 2.8128 -3.5357 -2.5906 30 1 0.4554 -0.7392 -6.0130 31 1 1.9220 -5.7373 -3.3125 32 1 0.3538 -5.8138 -4.2799 33 1 1.3246 -4.2029 -5.9827 34 1 2.8933 -4.1254 -5.0162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601408532.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:45 Heat of formation + Delta-G solvation = 6.421268 kcal Electronic energy + Delta-G solvation = -21261.328595 eV Core-core repulsion = 17904.570463 eV Total energy + Delta-G solvation = -3356.758132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.05997 -37.20495 -36.89652 -35.66608 -34.92422 -33.38190 -32.03071 -32.01881 -28.70861 -26.03232 -25.00843 -23.99572 -21.52705 -21.14790 -19.62137 -19.22142 -18.15376 -17.79125 -16.97658 -16.53090 -16.09820 -15.52216 -14.79501 -14.55211 -14.17871 -13.72771 -13.28681 -13.21316 -12.91503 -12.59641 -12.51798 -12.13105 -11.96797 -11.84753 -11.75793 -11.42332 -11.12588 -11.07438 -11.00813 -10.57618 -10.49289 -10.25711 -9.79802 -9.57896 -9.19275 -8.84274 -8.48964 -8.21029 -6.16350 -4.24914 0.62817 1.10863 1.90118 3.04451 3.19086 3.28635 3.30416 3.38170 3.82710 4.09646 4.28750 4.31910 4.62465 5.07740 5.12775 5.26154 5.27947 5.52542 5.61152 5.72183 5.78775 6.11748 6.18379 6.26564 6.34444 6.48070 6.71718 6.90158 7.05419 7.32132 7.50206 7.63686 7.74271 8.07171 8.28273 8.77739 9.42803 10.91568 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.007206 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.736624 B = 3884.469580 C = 4660.399796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.112 3.888 3 N -0.368 5.368 4 O 0.099 5.901 5 C 0.074 3.926 6 C -0.783 4.783 7 S 2.723 3.277 8 O -0.962 6.962 9 O -0.962 6.962 10 N -1.088 6.088 11 C 0.160 3.840 12 C 0.033 3.967 13 C -0.496 4.496 14 H 0.062 0.938 15 C 0.074 3.926 16 N -0.876 5.876 17 Si 0.886 3.114 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.209 4.209 22 C -0.147 4.147 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.234 0.766 27 H 0.424 0.576 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 1.067 8.613 9.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.050 4.050 3 N -0.076 5.076 4 O 0.041 5.959 5 C -0.011 4.011 6 C -0.869 4.869 7 S 2.806 3.194 8 O -0.952 6.952 9 O -0.952 6.952 10 N -0.852 5.852 11 C 0.034 3.966 12 C 0.031 3.969 13 C -0.534 4.534 14 H 0.080 0.920 15 C -0.130 4.130 16 N -0.512 5.512 17 Si 0.714 3.286 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.247 4.247 22 C -0.185 4.185 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.103 0.897 26 H 0.250 0.750 27 H 0.262 0.738 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.320 2.064 9.095 10.278 hybrid contribution -1.136 0.370 -0.646 1.358 sum 3.184 2.434 8.449 9.352 Atomic orbital electron populations 1.20561 0.85049 1.05153 1.05103 1.23149 0.98900 0.85992 0.96909 1.73804 0.89009 1.23869 1.20958 1.84839 1.22242 1.23012 1.65806 1.26095 0.99757 0.83671 0.91530 1.33482 1.00633 1.27614 1.25151 1.01094 0.73511 0.72035 0.72752 1.93567 1.47462 1.67301 1.86897 1.93563 1.60572 1.85467 1.55640 1.55108 1.24052 1.84727 1.21289 1.20908 0.92525 1.00894 0.82267 1.18894 0.95783 0.89424 0.92828 1.20380 0.90631 1.14480 1.27885 0.92005 1.24973 0.96493 0.97051 0.94496 1.69987 1.29408 1.20365 1.31422 0.86689 0.84813 0.79526 0.77614 1.20559 1.21263 1.19715 1.23050 1.02360 0.94765 1.04496 1.22517 0.96956 1.03517 0.95535 0.88306 0.88565 0.89674 0.74990 0.73849 0.91835 0.93005 0.92921 0.91358 0.90339 0.89605 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.41 36.00 0.37 -1.04 16 2 C 0.11 1.77 7.33 -82.10 -0.60 1.17 16 3 N -0.37 -5.93 12.07 33.42 0.40 -5.52 16 4 O 0.10 1.39 11.20 17.17 0.19 1.59 16 5 C 0.07 0.93 12.05 29.74 0.36 1.29 16 6 C -0.78 -11.76 6.37 -39.38 -0.25 -12.01 16 7 S 2.72 43.50 5.81 -107.50 -0.62 42.88 16 8 O -0.96 -16.67 17.27 -57.17 -0.99 -17.66 16 9 O -0.96 -16.78 17.08 -57.17 -0.98 -17.76 16 10 N -1.09 -18.79 5.93 -10.62 -0.06 -18.85 16 11 C 0.16 3.14 6.09 -4.04 -0.02 3.12 16 12 C 0.03 0.72 1.58 -155.66 -0.25 0.48 16 13 C -0.50 -12.02 8.18 -34.44 -0.28 -12.30 16 14 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 15 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 16 N -0.88 -22.89 12.72 55.43 0.71 -22.19 16 17 Si 0.89 19.64 29.54 -169.99 -5.02 14.62 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C -0.21 -4.22 9.94 -26.70 -0.27 -4.49 16 22 C -0.15 -3.18 9.25 -26.70 -0.25 -3.43 16 23 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 24 H 0.10 1.28 7.14 -51.93 -0.37 0.91 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.23 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.42 7.15 8.15 -34.47 -0.28 6.87 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.05 0.95 7.68 -51.93 -0.40 0.56 16 30 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.09 2.02 8.14 -51.93 -0.42 1.59 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 313.72 15.07 4.73 4.73 Total: -1.00 -30.06 313.72 -6.90 -36.96 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.98 Total: 6.69 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -1.28 Total: -25.48 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 1.05 Total: -46.56 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.77 Total: -33.83 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 43.50 SS G_CDS: -0.62 Total: 42.88 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.06 -6.90 -36.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408532.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.384 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds