Wall clock time and date at job start Tue Mar 31 2020 02:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86803 * 119.99727 * 2 1 4 4 H 1.48499 * 109.47010 * 240.00039 * 3 2 1 5 5 H 1.48505 * 109.47099 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47248 * 119.99598 * 3 2 1 7 7 C 1.39006 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00148 * 195.19813 * 7 2 1 9 9 N 1.36899 * 120.00002 * 15.20451 * 7 2 1 10 10 C 1.38205 * 125.61855 * 220.54986 * 9 7 2 11 11 C 1.46895 * 125.43745 * 0.03266 * 10 9 7 12 12 O 1.21663 * 119.99865 * 354.06015 * 11 10 9 13 13 N 1.34777 * 119.99619 * 174.06049 * 11 10 9 14 14 C 1.47581 * 134.48732 * 174.91844 * 13 11 10 15 15 C 1.53949 * 86.11720 * 155.35169 * 14 13 11 16 16 O 1.42898 * 113.74153 * 269.15048 * 15 14 13 17 17 C 1.47582 * 134.49624 * 354.90633 * 13 11 10 18 18 C 1.36126 * 109.12683 * 179.77388 * 10 9 7 19 19 C 1.41702 * 107.74688 * 0.22267 * 18 10 9 20 20 C 1.40014 * 133.35050 * 180.02562 * 19 18 10 21 21 C 1.36579 * 119.83328 * 179.97438 * 20 19 18 22 22 C 1.38856 * 120.59959 * 359.97438 * 21 20 19 23 23 C 1.37852 * 120.63059 * 0.04799 * 22 21 20 24 24 C 1.37834 * 125.62039 * 40.71686 * 9 7 2 25 25 H 0.97001 * 120.00471 * 4.93181 * 1 2 3 26 26 H 1.08996 * 113.77481 * 41.04964 * 14 13 11 27 27 H 1.09001 * 113.76448 * 269.65142 * 14 13 11 28 28 H 1.09006 * 113.74038 * 137.94543 * 15 14 13 29 29 H 0.96698 * 113.99685 * 178.07580 * 16 15 14 30 30 H 1.08994 * 113.76699 * 90.34340 * 17 13 11 31 31 H 1.08997 * 113.76920 * 318.94250 * 17 13 11 32 32 H 1.07999 * 126.12884 * 180.24890 * 18 10 9 33 33 H 1.08007 * 120.08680 * 359.97438 * 20 19 18 34 34 H 1.07993 * 119.70282 * 180.02562 * 21 20 19 35 35 H 1.07996 * 119.68668 * 180.02562 * 22 21 20 36 36 H 1.08001 * 120.09492 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1012 1.6965 -1.2125 5 1 1.2823 2.7465 -0.0006 6 1 3.1011 1.6966 1.2125 7 6 2.0086 -1.2038 0.0005 8 1 3.0603 -1.2200 0.2457 9 7 1.3601 -2.3688 -0.3099 10 6 1.5393 -3.5834 0.3246 11 6 2.4579 -3.8325 1.4436 12 8 3.2170 -2.9568 1.8139 13 7 2.4597 -5.0311 2.0599 14 6 3.2820 -5.6484 3.1185 15 6 2.0614 -6.5435 3.3994 16 8 1.1684 -6.0081 4.3780 17 6 1.6400 -6.2532 1.9474 18 6 0.7246 -4.5108 -0.2491 19 6 0.0045 -3.8698 -1.2875 20 6 -0.9586 -4.3106 -2.2033 21 6 -1.4850 -3.4351 -3.1099 22 6 -1.0744 -2.1089 -3.1325 23 6 -0.1273 -1.6516 -2.2413 24 6 0.4232 -2.5244 -1.3088 25 1 -0.4851 0.8369 -0.0722 26 1 3.5271 -4.9705 3.9360 27 1 4.1480 -6.1922 2.7410 28 1 2.3156 -7.5877 3.5821 29 1 0.3854 -6.5531 4.5360 30 1 2.0237 -6.9746 1.2260 31 1 0.5741 -6.0581 1.8301 32 1 0.6415 -5.5491 0.0364 33 1 -1.2843 -5.3403 -2.1930 34 1 -2.2279 -3.7773 -3.8150 35 1 -1.5007 -1.4292 -3.8554 36 1 0.1861 -0.6183 -2.2668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610813697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:02 Heat of formation + Delta-G solvation = -2.143300 kcal Electronic energy + Delta-G solvation = -22480.595837 eV Core-core repulsion = 19123.855460 eV Total energy + Delta-G solvation = -3356.740377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.23088 -40.98552 -38.94185 -37.44908 -36.15424 -35.45819 -32.58804 -30.94420 -30.67717 -28.88993 -27.34754 -26.60532 -24.62279 -22.84973 -22.11839 -21.46649 -20.36590 -19.56592 -18.43408 -17.79259 -17.54441 -17.18780 -16.58185 -16.42603 -16.19914 -15.54231 -15.09482 -14.94145 -14.78845 -14.61109 -14.27080 -13.95656 -13.86644 -13.65075 -13.52494 -13.13648 -12.93662 -12.81750 -12.39135 -12.24151 -11.97828 -11.84670 -11.49030 -11.22373 -10.98535 -10.66557 -10.38380 -9.72585 -8.98139 -8.63462 -8.31696 -6.43015 0.13373 1.09353 1.24853 1.33784 1.37583 1.43656 1.71062 2.10943 2.46432 2.87292 2.93068 3.12566 3.36573 3.46097 3.74133 4.15176 4.23568 4.41502 4.42330 4.49587 4.51714 4.59848 4.64741 4.73285 4.84459 4.90637 5.00473 5.05371 5.14818 5.24473 5.36699 5.44988 5.75354 5.90334 5.96076 6.24875 6.34386 6.57070 6.62718 6.93291 6.95761 7.26324 7.46481 8.36053 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.006983 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.975696 B = 4008.892650 C = 5596.417631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.013 3.987 3 Si 0.993 3.007 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.272 1.272 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.269 5.269 10 C -0.052 4.052 11 C 0.596 3.404 12 O -0.591 6.591 13 N -0.643 5.643 14 C 0.101 3.899 15 C 0.091 3.909 16 O -0.575 6.575 17 C 0.064 3.936 18 C -0.182 4.182 19 C -0.152 4.152 20 C -0.083 4.083 21 C -0.155 4.155 22 C -0.135 4.135 23 C -0.092 4.092 24 C 0.060 3.940 25 H 0.283 0.717 26 H 0.060 0.940 27 H 0.132 0.868 28 H 0.145 0.855 29 H 0.404 0.596 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.173 0.827 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -15.633 0.861 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.195 4.195 3 Si 0.813 3.187 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.197 1.197 7 C -0.497 4.497 8 H 0.106 0.894 9 N 0.069 4.931 10 C -0.168 4.168 11 C 0.388 3.612 12 O -0.473 6.473 13 N -0.379 5.379 14 C -0.020 4.020 15 C 0.032 3.968 16 O -0.384 6.384 17 C -0.057 4.057 18 C -0.209 4.209 19 C -0.157 4.157 20 C -0.102 4.102 21 C -0.173 4.173 22 C -0.156 4.156 23 C -0.112 4.112 24 C -0.054 4.054 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.150 0.850 28 H 0.162 0.838 29 H 0.256 0.744 30 H 0.148 0.852 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.152 0.848 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.591 -14.064 1.205 14.128 hybrid contribution 0.152 1.210 0.245 1.244 sum -0.438 -12.854 1.450 12.943 Atomic orbital electron populations 1.70069 1.07430 1.30331 1.41005 1.26491 0.96273 1.03295 0.93466 0.85040 0.78354 0.75653 0.79649 1.18104 1.18259 1.19696 1.19873 0.94893 0.83950 1.50938 0.89395 1.40114 1.27305 1.06213 1.19507 1.20251 1.06492 0.89336 1.00694 1.17069 0.81655 0.81662 0.80766 1.90706 1.44291 1.45236 1.67031 1.49690 1.36686 1.11936 1.39576 1.23661 0.96228 0.93756 0.88386 1.23350 0.89223 0.98039 0.86203 1.86518 1.38100 1.54321 1.59460 1.24500 0.97878 0.83912 0.99448 1.20993 1.00298 0.99352 1.00291 1.18489 1.02961 0.92671 1.01553 1.20510 0.95268 1.00375 0.94010 1.20778 1.02583 0.92943 1.01025 1.21007 0.97849 0.97272 0.99428 1.20168 0.98598 0.97280 0.95200 1.18791 0.97598 0.95869 0.93169 0.90652 0.92113 0.85040 0.83756 0.74448 0.85157 0.89453 0.80963 0.83532 0.83222 0.84750 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.88 10.95 21.67 0.24 -49.65 16 2 C 0.01 0.73 4.52 84.95 0.38 1.11 16 3 Si 0.99 44.87 29.58 68.60 2.03 46.90 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.37 -22.79 8.80 84.09 0.74 -22.05 16 8 H 0.09 5.70 6.89 -2.91 -0.02 5.68 16 9 N -0.27 -15.93 2.82 -331.34 -0.93 -16.86 16 10 C -0.05 -2.75 6.76 39.91 0.27 -2.48 16 11 C 0.60 29.95 8.00 86.51 0.69 30.64 16 12 O -0.59 -34.93 15.72 -4.23 -0.07 -34.99 16 13 N -0.64 -22.76 3.60 -845.73 -3.05 -25.81 16 14 C 0.10 2.55 8.67 86.48 0.75 3.30 16 15 C 0.09 1.54 5.40 31.26 0.17 1.71 16 16 O -0.57 -12.47 13.69 -148.98 -2.04 -14.51 16 17 C 0.06 1.36 6.48 86.48 0.56 1.92 16 18 C -0.18 -7.94 9.83 22.63 0.22 -7.72 16 19 C -0.15 -7.06 6.16 -21.34 -0.13 -7.19 16 20 C -0.08 -3.06 10.06 22.31 0.22 -2.84 16 21 C -0.15 -5.37 9.97 22.03 0.22 -5.15 16 22 C -0.14 -5.43 10.02 22.33 0.22 -5.21 16 23 C -0.09 -4.66 8.58 22.38 0.19 -4.47 16 24 C 0.06 3.27 6.06 39.06 0.24 3.51 16 25 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.15 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.40 4.27 9.12 -74.06 -0.68 3.59 16 30 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.09 1.98 6.95 -2.39 -0.02 1.96 16 32 H 0.17 5.60 5.34 -2.91 -0.02 5.59 16 33 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 35 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.09 4.80 6.57 -2.91 -0.02 4.78 16 Total: -1.00 -88.29 306.93 1.39 -86.90 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.46 Total: 22.93 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 4.75 Total: -14.92 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -3.74 Total: -92.32 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -2.11 Total: -49.50 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -88.29 1.39 -86.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.761 kcal (2) G-P(sol) polarization free energy of solvation -88.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds