Wall clock time and date at job start Tue Mar 31 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99991 * 2 1 4 4 C 1.53000 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47304 * 64.99838 * 4 3 2 6 6 C 1.46496 * 120.00271 * 270.00475 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99875 * 6 5 4 8 8 H 1.08005 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00286 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47148 * 89.99653 * 11 9 7 13 13 H 1.48496 * 109.47010 * 210.00013 * 11 9 7 14 14 H 1.48501 * 109.46644 * 329.99739 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 5 4 17 17 N 1.34773 * 120.00097 * 180.27545 * 15 5 4 18 18 C 1.39541 * 120.00385 * 179.72696 * 17 15 5 19 19 C 1.35879 * 127.79131 * 180.02562 * 18 17 15 20 20 N 1.31222 * 115.50292 * 179.97438 * 19 18 17 21 21 N 1.28157 * 118.79282 * 0.02562 * 20 19 18 22 22 S 1.69868 * 106.60105 * 359.72769 * 21 20 19 23 23 H 1.08998 * 109.46739 * 300.00029 * 1 2 3 24 24 H 1.09004 * 109.46884 * 59.99882 * 1 2 3 25 25 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47132 * 60.00086 * 3 2 1 27 27 H 1.09001 * 109.46927 * 300.00079 * 3 2 1 28 28 H 1.08994 * 109.47070 * 305.00252 * 4 3 2 29 29 H 1.08996 * 109.47306 * 184.99996 * 4 3 2 30 30 H 1.08997 * 109.47346 * 29.99460 * 6 5 4 31 31 H 1.09004 * 109.47612 * 149.99559 * 6 5 4 32 32 H 0.97009 * 119.99873 * 179.97438 * 10 9 7 33 33 H 0.97000 * 120.00112 * 359.73180 * 17 15 5 34 34 H 1.07999 * 122.24636 * 0.02720 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2198 -0.5459 -0.6545 9 6 5.8606 -2.6288 -0.9528 10 7 4.9854 -3.5443 -1.3070 11 14 7.5910 -3.1317 -0.4603 12 1 7.6356 -3.3845 1.0024 13 1 7.9731 -4.3682 -1.1883 14 1 8.5396 -2.0419 -0.8034 15 6 4.2615 1.3338 -2.3218 16 8 4.1544 2.5427 -2.2470 17 7 4.6612 0.7628 -3.4754 18 6 4.9516 1.5589 -4.5840 19 6 5.3631 1.1549 -5.8144 20 7 5.5675 2.1150 -6.6852 21 7 5.3707 3.3286 -6.3235 22 16 4.8621 3.2759 -4.7036 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8515 0.5683 0.8409 29 1 3.9786 2.1765 0.0889 30 1 3.3853 -1.3629 -0.6735 31 1 3.9120 -1.2114 -2.3669 32 1 5.2386 -4.4808 -1.3128 33 1 4.7469 -0.2015 -3.5350 34 1 5.5111 0.1136 -6.0593 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617282617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:32 Heat of formation + Delta-G solvation = -0.467690 kcal Electronic energy + Delta-G solvation = -20671.848473 eV Core-core repulsion = 17347.084364 eV Total energy + Delta-G solvation = -3324.764109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.41339 -39.59632 -37.69874 -35.46427 -35.02825 -32.81733 -30.72534 -29.47709 -27.32312 -26.26239 -25.59551 -23.22025 -22.89945 -21.12406 -20.37569 -18.09352 -17.78143 -16.94104 -16.69668 -16.15337 -15.84693 -15.48716 -15.03807 -14.79739 -14.62733 -14.30102 -14.09875 -13.51561 -12.68536 -12.27434 -12.15631 -12.07935 -11.73833 -11.62691 -11.46088 -11.34162 -11.12845 -11.02013 -10.77569 -10.38523 -10.23568 -9.94641 -9.50080 -9.39513 -9.26090 -8.71026 -8.49440 -7.90798 -6.32890 -4.42717 0.49047 1.15839 1.99355 2.52202 2.83230 3.14420 3.22607 3.25280 3.42318 4.01416 4.13380 4.30424 4.68049 4.92232 5.00718 5.26539 5.35412 5.48532 5.52385 5.54797 5.73165 5.77465 5.84821 6.16840 6.31553 6.47154 6.83150 6.98746 7.31994 7.43473 7.61295 7.85639 8.05995 8.10106 8.58127 8.72500 9.26828 10.73220 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.006761 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.991572 B = 4140.155774 C = 5957.388731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.045 3.955 4 C 0.137 3.863 5 N -0.587 5.587 6 C 0.237 3.763 7 C -0.550 4.550 8 H 0.062 0.938 9 C 0.069 3.931 10 N -0.886 5.886 11 Si 0.898 3.102 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.696 3.304 16 O -0.587 6.587 17 N -0.619 5.619 18 C 0.088 3.912 19 C -0.100 4.100 20 N -0.201 5.201 21 N -0.273 5.273 22 S 0.325 5.675 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.267 0.733 33 H 0.433 0.567 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 6.596 0.123 8.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.033 4.033 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.118 3.882 7 C -0.589 4.589 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.523 5.523 11 Si 0.725 3.275 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.397 3.603 16 O -0.466 6.466 17 N -0.268 5.268 18 C -0.151 4.151 19 C -0.269 4.269 20 N -0.068 5.068 21 N -0.256 5.256 22 S 0.456 5.544 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.277 0.723 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -5.504 8.738 -0.317 10.332 hybrid contribution 0.744 -2.536 0.709 2.736 sum -4.759 6.202 0.392 7.828 Atomic orbital electron populations 1.22689 0.81955 1.02494 0.99264 1.88046 1.18848 1.27360 1.95242 1.23056 0.95026 0.85078 1.00115 1.21369 0.91189 0.99732 0.86359 1.47364 1.65797 1.09471 1.09235 1.19540 0.98143 0.72323 0.98236 1.21510 0.96993 0.92651 1.47736 0.91952 1.24938 0.97758 0.96261 0.94601 1.69925 1.34451 1.01415 1.46517 0.86493 0.83949 0.78209 0.78855 1.20356 1.20948 1.19779 1.15893 0.78664 0.85181 0.80530 1.90844 1.61150 1.12089 1.82506 1.42275 1.65891 1.11174 1.07509 1.23920 1.00107 0.99369 0.91717 1.23088 1.12888 1.02606 0.88319 1.70870 1.11328 0.95462 1.29145 1.82184 1.24885 1.13028 1.05483 1.85463 1.56753 0.98071 1.14073 0.94578 0.94627 0.89797 0.92775 0.93243 0.88786 0.88905 0.92142 0.95554 0.92289 0.72348 0.79265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.09 9.53 -35.23 -0.34 -6.42 16 3 C 0.05 0.65 6.28 37.16 0.23 0.89 16 4 C 0.14 2.23 5.81 -4.04 -0.02 2.21 16 5 N -0.59 -11.14 2.42 -180.81 -0.44 -11.57 16 6 C 0.24 5.15 4.75 -5.19 -0.02 5.12 16 7 C -0.55 -13.26 9.39 -34.44 -0.32 -13.58 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -23.01 13.29 55.43 0.74 -22.28 16 11 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 C 0.70 13.18 8.24 -86.92 -0.72 12.47 16 16 O -0.59 -11.47 13.73 5.28 0.07 -11.40 16 17 N -0.62 -10.79 5.29 -15.63 -0.08 -10.87 16 18 C 0.09 1.46 7.34 -14.88 -0.11 1.35 16 19 C -0.10 -1.54 11.37 -18.66 -0.21 -1.75 16 20 N -0.20 -3.38 11.65 29.66 0.35 -3.03 16 21 N -0.27 -4.67 13.33 60.35 0.80 -3.86 16 22 S 0.33 5.32 21.29 -107.50 -2.29 3.03 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 29 H 0.09 1.42 7.42 -51.93 -0.39 1.03 16 30 H 0.06 1.44 7.11 -51.93 -0.37 1.07 16 31 H 0.03 0.59 6.36 -51.93 -0.33 0.26 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.43 7.45 6.55 -40.82 -0.27 7.18 16 34 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 311.44 15.07 4.69 4.69 Total: -1.00 -27.78 311.44 -5.53 -33.30 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.85 Total: 3.99 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -0.16 Total: 9.82 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 1.37 Total: -51.62 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.26 Total: -17.82 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -2.29 Total: 3.03 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.78 -5.53 -33.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617282617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.837 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds