Wall clock time and date at job start Tue Mar 31 2020 02:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99875 * 2 1 4 4 C 1.53000 * 109.46962 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47565 * 64.99259 * 4 3 2 6 6 C 1.46491 * 120.00134 * 274.66308 * 5 4 3 7 7 C 1.50696 * 109.47408 * 263.07893 * 6 5 4 8 8 H 1.08004 * 119.99520 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00503 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00088 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00257 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.46768 * 60.00571 * 11 9 7 13 13 H 1.48496 * 109.46999 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47320 * 300.00672 * 11 9 7 15 15 C 1.34779 * 119.99689 * 94.65691 * 5 4 3 16 16 O 1.21643 * 120.00224 * 3.75561 * 15 5 4 17 17 C 1.47185 * 120.00103 * 183.75471 * 15 5 4 18 18 C 1.35083 * 122.48644 * 173.58926 * 17 15 5 19 19 S 1.76196 * 108.21728 * 180.02562 * 18 17 15 20 20 C 1.76052 * 90.15657 * 359.97438 * 19 18 17 21 21 O 1.35493 * 125.18020 * 179.97438 * 20 19 18 22 22 N 1.29258 * 109.64260 * 0.02562 * 20 19 18 23 23 H 1.09003 * 109.47366 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47456 * 300.00352 * 1 2 3 25 25 H 1.09000 * 109.47027 * 60.00795 * 1 2 3 26 26 H 1.08998 * 109.47680 * 59.99665 * 3 2 1 27 27 H 1.09002 * 109.46935 * 299.99161 * 3 2 1 28 28 H 1.09005 * 109.46738 * 304.99352 * 4 3 2 29 29 H 1.09001 * 109.47270 * 184.99816 * 4 3 2 30 30 H 1.09002 * 109.47437 * 23.08429 * 6 5 4 31 31 H 1.09005 * 109.47320 * 143.08151 * 6 5 4 32 32 H 0.96994 * 120.00312 * 180.02562 * 10 9 7 33 33 H 1.07995 * 125.89316 * 0.02562 * 18 17 15 34 34 H 0.96703 * 113.99645 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.0086 -0.8957 -1.3730 7 6 5.4054 -1.3921 -1.1017 8 1 6.1907 -0.6906 -0.8619 9 6 5.6805 -2.7419 -1.1588 10 7 4.7242 -3.5962 -1.4504 11 14 7.4118 -3.3573 -0.8218 12 1 7.8174 -2.9663 0.5522 13 1 7.4441 -4.8367 -0.9458 14 1 8.3502 -2.7580 -1.8044 15 6 4.3533 1.3355 -2.2897 16 8 4.3921 2.5450 -2.1663 17 6 4.7176 0.7147 -3.5735 18 6 4.9795 1.4408 -4.6821 19 16 5.3700 0.3272 -5.9904 20 6 5.1408 -1.0383 -4.9031 21 8 5.2846 -2.3414 -5.2452 22 7 4.8135 -0.6085 -3.7288 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.6886 1.8465 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 3.8507 0.5686 0.8428 29 1 3.9784 2.1765 0.0902 30 1 3.3201 -1.3358 -0.6517 31 1 3.7106 -1.1825 -2.3815 32 1 4.9176 -4.5459 -1.4901 33 1 4.9540 2.5180 -4.7540 34 1 5.5335 -2.4802 -6.1693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619367321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:28 Heat of formation + Delta-G solvation = -41.906214 kcal Electronic energy + Delta-G solvation = -21248.712635 eV Core-core repulsion = 17889.858866 eV Total energy + Delta-G solvation = -3358.853769 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.93444 -38.44899 -37.43722 -36.71141 -34.85882 -32.34869 -30.02320 -29.36846 -26.83481 -26.03689 -24.87092 -22.84353 -22.53742 -20.74731 -19.66589 -17.97961 -17.07161 -16.37854 -16.07747 -15.86499 -15.32261 -15.15825 -14.97805 -14.81890 -14.41111 -14.24561 -13.76636 -13.09525 -12.43837 -12.24058 -11.97903 -11.94854 -11.67556 -11.59691 -11.44500 -11.23190 -10.80906 -10.75547 -10.50754 -10.00769 -9.57741 -9.41335 -9.26888 -9.08768 -8.58713 -8.20448 -8.04094 -7.52710 -5.82997 -3.82187 0.99178 1.28402 1.76212 2.71890 3.38268 3.40237 3.43524 3.47139 3.99865 4.02946 4.22899 4.59229 5.25201 5.41838 5.49084 5.53425 5.54335 5.63265 5.67905 5.71673 5.76595 5.91118 6.05376 6.30164 6.38936 6.97710 7.05889 7.53099 7.75396 7.90243 8.08860 8.24716 8.43331 8.46932 8.92825 9.18475 9.77025 11.25397 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.008807 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.184685 B = 3178.691836 C = 4676.464791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.049 3.951 4 C 0.117 3.883 5 N -0.566 5.566 6 C 0.230 3.770 7 C -0.507 4.507 8 H 0.047 0.953 9 C 0.073 3.927 10 N -0.884 5.884 11 Si 0.884 3.116 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.584 3.416 16 O -0.574 6.574 17 C 0.067 3.933 18 C -0.193 4.193 19 S -0.028 6.028 20 C 0.290 3.710 21 O -0.407 6.407 22 N -0.390 5.390 23 H 0.083 0.917 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.258 0.742 33 H 0.185 0.815 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.021 6.484 -6.353 9.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C -0.029 4.029 4 C -0.007 4.007 5 N -0.294 5.294 6 C 0.111 3.889 7 C -0.546 4.546 8 H 0.065 0.935 9 C -0.129 4.129 10 N -0.523 5.523 11 Si 0.712 3.288 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.207 1.207 15 C 0.369 3.631 16 O -0.457 6.457 17 C -0.064 4.064 18 C -0.334 4.334 19 S 0.218 5.782 20 C -0.031 4.031 21 O -0.204 6.204 22 N -0.118 5.118 23 H 0.102 0.898 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.203 0.797 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.899 6.176 -6.358 9.684 hybrid contribution 0.864 -0.015 0.241 0.897 sum -3.035 6.161 -6.118 9.197 Atomic orbital electron populations 1.22680 0.82212 1.02451 0.99053 1.88100 1.18622 1.27182 1.95165 1.23007 0.95072 0.85112 0.99717 1.21451 0.91264 0.99880 0.88107 1.48203 1.59945 1.10662 1.10554 1.20094 0.97296 0.70792 1.00677 1.21204 0.94784 0.91835 1.46767 0.93461 1.24699 0.96125 0.96627 0.95457 1.69911 1.31633 1.02088 1.48677 0.86812 0.85931 0.77518 0.78501 1.20617 1.21435 1.20743 1.17126 0.77740 0.85492 0.82732 1.90702 1.57575 1.13706 1.83670 1.20206 1.03756 0.86623 0.95814 1.26541 1.09829 1.03798 0.93187 1.85028 1.71357 1.03471 1.18379 1.26096 0.99347 0.87676 0.89989 1.84924 1.85761 1.16337 1.33356 1.67178 1.17562 1.11886 1.15158 0.89824 0.94768 0.94703 0.93060 0.93521 0.89349 0.89031 0.93965 0.90515 0.93218 0.79734 0.74189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.89 9.22 -35.23 -0.32 -7.22 16 3 C 0.05 0.81 6.28 37.16 0.23 1.04 16 4 C 0.12 2.22 5.90 -4.04 -0.02 2.19 16 5 N -0.57 -12.81 2.46 -176.42 -0.43 -13.24 16 6 C 0.23 5.96 4.51 -5.20 -0.02 5.94 16 7 C -0.51 -14.14 8.16 -34.44 -0.28 -14.42 16 8 H 0.05 1.36 7.81 -52.48 -0.41 0.95 16 9 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 10 N -0.88 -25.86 13.29 55.43 0.74 -25.13 16 11 Si 0.88 22.09 29.54 -169.99 -5.02 17.07 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.58 13.05 7.57 -12.63 -0.10 12.95 16 16 O -0.57 -12.92 16.17 5.24 0.08 -12.84 16 17 C 0.07 1.40 6.47 -84.60 -0.55 0.85 16 18 C -0.19 -3.28 10.84 29.61 0.32 -2.96 16 19 S -0.03 -0.39 23.38 -107.50 -2.51 -2.91 16 20 C 0.29 5.32 8.91 51.68 0.46 5.78 16 21 O -0.41 -6.74 13.64 -18.17 -0.25 -6.99 16 22 N -0.39 -8.72 5.71 -11.34 -0.06 -8.79 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.69 8.11 -51.93 -0.42 1.27 16 29 H 0.09 1.63 7.24 -51.93 -0.38 1.25 16 30 H 0.04 1.18 6.85 -51.93 -0.36 0.82 16 31 H 0.08 2.12 5.24 -51.93 -0.27 1.85 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.19 2.76 8.02 -52.49 -0.42 2.34 16 34 H 0.41 3.66 9.03 45.56 0.41 4.07 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -34.43 311.16 -5.13 -39.56 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -3.09 Total: 0.87 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 1.06 Total: 14.92 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.24 Total: -47.16 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.49 Total: -27.05 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.51 Total: -2.91 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.43 -5.13 -39.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619367321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.345 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds