Wall clock time and date at job start Tue Mar 31 2020 03:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85462 * 179.97438 * 4 3 2 6 6 C 1.38371 * 120.14546 * 0.02562 * 5 4 3 7 7 C 1.38322 * 120.28253 * 0.02562 * 6 5 4 8 8 C 1.37992 * 120.14666 * 359.68983 * 7 6 5 9 9 C 1.50703 * 120.07882 * 180.27907 * 8 7 6 10 10 C 1.50696 * 109.47301 * 265.30317 * 9 8 7 11 11 O 1.21279 * 120.00345 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99835 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00107 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47163 * 179.97438 * 13 12 10 15 15 O 1.21294 * 120.00175 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99777 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99864 * 180.02562 * 16 14 13 18 18 H 1.08001 * 119.99989 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00086 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99950 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46737 * 60.00305 * 21 19 17 23 23 H 1.48502 * 109.46853 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47084 * 300.00289 * 21 19 17 25 25 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 26 26 H 1.07994 * 120.07089 * 359.95316 * 4 3 2 27 27 H 1.08005 * 119.93031 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.86212 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.93099 * 179.97438 * 7 6 5 30 30 H 1.08994 * 109.46589 * 25.30514 * 9 8 7 31 31 H 1.08997 * 109.46615 * 145.29847 * 9 8 7 32 32 H 0.97004 * 120.00200 * 359.97438 * 12 10 9 33 33 H 1.09001 * 109.46839 * 299.99751 * 13 12 10 34 34 H 1.08999 * 109.46923 * 59.99451 * 13 12 10 35 35 H 0.96995 * 120.00152 * 0.02562 * 16 14 13 36 36 H 0.97002 * 119.99877 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0632 -1.1984 6 6 5.3751 0.0024 0.0001 7 6 4.6864 -0.0600 1.1981 8 6 3.3066 -0.0556 1.2053 9 6 2.5579 -0.1173 2.5117 10 6 2.2024 -1.5490 2.8199 11 8 2.5257 -2.4324 2.0544 12 7 1.5253 -1.8477 3.9463 13 6 1.1803 -3.2395 4.2463 14 6 0.4315 -3.3011 5.5526 15 8 0.2084 -2.2826 6.1724 16 7 0.0097 -4.4879 6.0322 17 6 -0.6720 -4.5439 7.2204 18 1 -0.8706 -3.6370 7.7723 19 6 -1.1073 -5.7674 7.7146 20 7 -0.8653 -6.8709 7.0434 21 14 -2.0355 -5.8437 9.3340 22 1 -3.2774 -5.0359 9.2312 23 1 -2.3858 -7.2546 9.6376 24 1 -1.1808 -5.3015 10.4205 25 1 -1.0500 0.0005 0.0001 26 1 2.7702 0.1090 -2.1414 27 1 5.2297 0.1113 -2.1304 28 1 6.4551 0.0029 0.0002 29 1 5.2299 -0.1077 2.1302 30 1 3.1852 0.2811 3.3091 31 1 1.6462 0.4753 2.4363 32 1 1.2671 -1.1412 4.5588 33 1 0.5535 -3.6384 3.4486 34 1 2.0922 -3.8316 4.3223 35 1 0.1884 -5.3024 5.5367 36 1 -1.1689 -7.7251 7.3886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811526277.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:17 Heat of formation + Delta-G solvation = -22.684920 kcal Electronic energy + Delta-G solvation = -20761.528816 eV Core-core repulsion = 17403.897688 eV Total energy + Delta-G solvation = -3357.631128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27569 -40.32546 -39.52488 -36.26135 -35.28373 -34.87898 -33.70815 -33.37208 -31.15940 -30.03443 -28.12641 -26.26567 -24.22150 -22.94883 -21.43242 -21.36211 -20.09809 -19.68241 -18.54675 -17.47858 -17.19691 -17.04007 -16.83679 -16.33133 -16.32305 -16.02317 -15.60729 -15.36425 -14.90584 -14.58856 -14.09733 -13.99941 -13.76203 -13.72566 -13.54634 -13.01836 -12.88054 -12.48209 -12.40371 -12.16792 -12.14192 -12.09464 -11.57245 -11.37740 -11.09853 -10.58035 -10.21940 -10.09707 -9.77180 -9.40188 -8.51997 -6.02614 -0.00053 0.40465 1.37327 1.42255 1.53315 1.58290 1.76588 1.89611 2.02722 2.11547 2.32075 3.02630 3.12827 3.15013 3.38423 3.63704 3.90231 3.94563 4.17004 4.22775 4.31046 4.40647 4.42042 4.48249 4.56499 4.68177 4.76246 5.07827 5.19393 5.26036 5.37171 5.49147 5.55071 5.57764 5.90288 6.03075 6.44301 6.52147 6.57105 7.01917 7.16234 7.42693 7.92430 8.64722 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.035432 B = 0.002817 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.047185 B = 9935.812369 C =10133.137703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.184 4.184 3 C -0.004 4.004 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.061 4.061 9 C -0.098 4.098 10 C 0.517 3.483 11 O -0.574 6.574 12 N -0.708 5.708 13 C 0.122 3.878 14 C 0.433 3.567 15 O -0.623 6.623 16 N -0.559 5.559 17 C -0.338 4.338 18 H 0.087 0.913 19 C -0.011 4.011 20 N -0.917 5.917 21 Si 0.997 3.003 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.269 1.269 25 H 0.252 0.748 26 H 0.135 0.865 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.415 0.585 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.195 13.447 -14.039 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.184 4.184 3 C -0.004 4.004 4 C -0.128 4.128 5 C -0.138 4.138 6 C -0.129 4.129 7 C -0.135 4.135 8 C -0.062 4.062 9 C -0.137 4.137 10 C 0.305 3.695 11 O -0.453 6.453 12 N -0.362 5.362 13 C -0.006 4.006 14 C 0.220 3.780 15 O -0.511 6.511 16 N -0.195 5.195 17 C -0.468 4.468 18 H 0.105 0.895 19 C -0.211 4.211 20 N -0.557 5.557 21 Si 0.820 3.180 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.194 1.194 25 H 0.268 0.732 26 H 0.153 0.847 27 H 0.173 0.827 28 H 0.172 0.828 29 H 0.161 0.839 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.253 0.747 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.225 13.257 -14.117 21.451 hybrid contribution -0.879 -0.583 0.794 1.320 sum 8.346 12.675 -13.322 20.193 Atomic orbital electron populations 1.25697 0.96628 0.98313 0.97993 1.20489 0.92883 1.02455 1.02591 1.16125 0.86848 1.03205 0.94267 1.21408 0.95231 0.99528 0.96665 1.21434 0.93339 0.99325 0.99664 1.21606 1.01557 0.97985 0.91782 1.21261 0.92532 0.99589 1.00106 1.19523 0.94311 0.99713 0.92647 1.20696 1.03243 0.92515 0.97251 1.20961 0.76746 0.91990 0.79817 1.90688 1.55049 1.50563 1.49015 1.45724 1.57448 1.08867 1.24206 1.20738 1.00130 0.85122 0.94583 1.20386 0.84913 0.83983 0.88676 1.90469 1.63247 1.34902 1.62463 1.41851 1.48930 1.07699 1.20994 1.19717 1.33144 0.94948 0.98954 0.89478 1.26148 0.98108 0.93964 1.02906 1.69679 1.46407 0.98968 1.40629 0.84923 0.78385 0.77657 0.77002 1.19424 1.19640 1.19408 0.73195 0.84697 0.82728 0.82819 0.83949 0.84734 0.87021 0.74705 0.89326 0.88970 0.76769 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 19.25 74.32 1.43 -2.41 16 2 C -0.18 -4.90 11.79 30.02 0.35 -4.55 16 3 C 0.00 -0.11 5.72 -21.40 -0.12 -0.24 16 4 C -0.11 -2.35 9.75 22.52 0.22 -2.13 16 5 C -0.12 -2.02 10.03 22.23 0.22 -1.80 16 6 C -0.11 -1.87 10.04 22.32 0.22 -1.65 16 7 C -0.12 -2.38 9.67 22.23 0.21 -2.16 16 8 C -0.06 -1.51 4.41 -19.61 -0.09 -1.60 16 9 C -0.10 -2.27 5.34 29.10 0.16 -2.12 16 10 C 0.52 16.24 7.82 87.66 0.69 16.93 16 11 O -0.57 -22.11 16.03 -3.03 -0.05 -22.16 16 12 N -0.71 -23.24 5.53 -466.79 -2.58 -25.82 16 13 C 0.12 4.54 6.15 85.63 0.53 5.06 16 14 C 0.43 20.04 7.85 87.66 0.69 20.73 16 15 O -0.62 -31.99 15.24 -3.07 -0.05 -32.04 16 16 N -0.56 -28.21 5.29 -306.99 -1.62 -29.84 16 17 C -0.34 -18.63 9.68 84.04 0.81 -17.82 16 18 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 19 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 20 N -0.92 -48.85 13.05 21.66 0.28 -48.57 16 21 Si 1.00 41.61 29.55 68.60 2.03 43.64 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 25 H 0.25 3.64 7.80 -4.42 -0.03 3.60 16 26 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 27 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.13 2.28 8.05 -2.39 -0.02 2.26 16 31 H 0.11 2.40 7.28 -2.39 -0.02 2.39 16 32 H 0.41 13.12 7.44 -92.71 -0.69 12.43 16 33 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 36 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -71.00 331.49 3.51 -67.49 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.30 Total: 41.14 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 5.79 Total: 6.15 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.92 Total: -104.22 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.10 Total: -54.19 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -71.00 3.51 -67.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811526277.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.802 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds