Wall clock time and date at job start Tue Mar 31 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47267 * 239.99693 * 3 2 1 5 5 H 1.48503 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46879 * 119.99857 * 3 2 1 7 7 C 1.37878 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99711 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00246 * 0.02562 * 7 2 1 10 10 O 1.42893 * 109.47100 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00152 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47476 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46674 * 65.00406 * 12 11 10 14 14 C 1.34758 * 116.99661 * 180.02562 * 13 12 11 15 15 O 1.21524 * 120.00289 * 359.97438 * 14 13 12 16 16 C 1.47289 * 119.99995 * 179.97438 * 14 13 12 17 17 C 1.41343 * 126.42670 * 359.97438 * 16 14 13 18 18 N 1.30431 * 108.01316 * 179.77418 * 17 16 14 19 19 N 1.39924 * 108.91754 * 0.38556 * 18 17 16 20 20 C 1.46504 * 125.74252 * 179.87651 * 19 18 17 21 21 C 1.53006 * 109.46883 * 304.68428 * 20 19 18 22 22 F 1.39895 * 109.46931 * 180.02562 * 21 20 19 23 23 C 1.34225 * 108.51387 * 359.60339 * 19 18 17 24 24 H 0.97009 * 119.99473 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47056 * 59.98938 * 9 7 2 26 26 H 1.08997 * 109.46704 * 299.99766 * 9 7 2 27 27 H 1.08999 * 109.47024 * 59.99750 * 11 10 9 28 28 H 1.09006 * 109.47148 * 300.00165 * 11 10 9 29 29 H 1.08994 * 109.46905 * 304.99952 * 12 11 10 30 30 H 1.08997 * 109.47107 * 184.99847 * 12 11 10 31 31 H 1.07998 * 125.99449 * 359.97438 * 17 16 14 32 32 H 1.09001 * 109.46891 * 184.68862 * 20 19 18 33 33 H 1.08993 * 109.47378 * 64.68234 * 20 19 18 34 34 H 1.09001 * 109.46801 * 300.00349 * 21 20 19 35 35 H 1.09001 * 109.46998 * 59.99945 * 21 20 19 36 36 H 1.08003 * 126.29302 * 180.22975 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0011 12 6 2.6478 -5.9563 0.0004 13 8 3.3999 -5.8886 1.2406 14 6 4.3986 -6.7792 1.3998 15 8 4.6343 -7.5905 0.5263 16 6 5.2046 -6.7693 2.6325 17 6 5.0503 -5.8910 3.7292 18 7 5.9467 -6.2020 4.6242 19 7 6.7120 -7.2719 4.1471 20 6 7.8226 -7.9126 4.8558 21 6 8.8625 -6.8564 5.2354 22 9 9.9233 -7.4683 5.9116 23 6 6.2533 -7.6162 2.9336 24 1 -0.4850 0.8402 0.0004 25 1 0.6245 -2.5571 -0.8895 26 1 0.6240 -2.5567 0.8903 27 1 0.9444 -4.9827 -0.8886 28 1 0.9450 -4.9822 0.8914 29 1 3.3207 -5.7958 -0.8419 30 1 2.1817 -6.9375 -0.0887 31 1 4.3166 -5.1030 3.8129 32 1 8.2831 -8.6599 4.2095 33 1 7.4478 -8.3944 5.7587 34 1 9.2372 -6.3745 4.3324 35 1 8.4020 -6.1090 5.8816 36 1 6.6343 -8.4096 2.3076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815247509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:15 Heat of formation + Delta-G solvation = -132.153367 kcal Electronic energy + Delta-G solvation = -21317.579062 eV Core-core repulsion = 17524.431801 eV Total energy + Delta-G solvation = -3793.147261 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.116 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.78555 -42.53543 -40.99615 -38.67235 -37.26637 -35.32491 -34.92049 -31.96642 -31.46836 -30.24666 -28.95566 -25.44185 -24.59051 -24.40952 -23.23106 -21.87244 -21.40111 -19.24007 -18.66155 -18.04891 -17.85468 -17.49795 -17.27572 -16.98079 -16.60012 -16.33187 -16.23070 -16.07926 -15.56108 -15.16145 -14.96403 -14.34045 -14.21508 -14.02027 -13.74726 -13.63537 -13.18274 -12.90442 -12.70363 -12.66526 -12.44949 -12.28609 -11.97786 -11.84034 -11.66212 -11.41363 -11.26715 -10.86920 -10.72581 -10.23977 -9.94598 -8.30711 -6.42611 0.25458 0.93759 1.10075 1.41418 1.45913 1.54267 1.82301 2.13431 2.35859 3.03277 3.10708 3.12124 3.55856 3.66455 3.74003 3.92482 3.97908 3.99350 4.13630 4.16909 4.20524 4.43219 4.48597 4.51298 4.61813 4.75536 4.79183 4.88801 5.20411 5.27364 5.47168 5.56029 5.68171 5.97314 6.34906 6.52590 6.79372 6.83184 7.28905 8.81237 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.016751 B = 0.002983 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.133852 B = 9385.389511 C =10716.362826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.053 3.947 12 C 0.081 3.919 13 O -0.355 6.355 14 C 0.544 3.456 15 O -0.548 6.548 16 C -0.306 4.306 17 C 0.106 3.894 18 N -0.318 5.318 19 N -0.356 5.356 20 C 0.098 3.902 21 C 0.054 3.946 22 F -0.215 7.215 23 C 0.163 3.837 24 H 0.271 0.729 25 H -0.008 1.008 26 H -0.010 1.010 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.201 0.799 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.811 -18.676 9.024 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.024 4.024 12 C 0.008 3.992 13 O -0.271 6.271 14 C 0.391 3.609 15 O -0.440 6.440 16 C -0.319 4.319 17 C -0.082 4.082 18 N -0.137 5.137 19 N -0.133 5.133 20 C -0.022 4.022 21 C -0.002 4.002 22 F -0.196 7.196 23 C 0.010 3.990 24 H 0.080 0.920 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.217 0.783 32 H 0.166 0.834 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 15.523 -18.555 10.035 26.191 hybrid contribution -0.758 0.635 -0.987 1.397 sum 14.766 -17.919 9.048 24.920 Atomic orbital electron populations 1.70057 1.07662 1.28704 1.50431 1.25926 0.95965 1.03267 0.93935 0.85263 0.78132 0.76857 0.79345 1.19085 1.19948 1.19075 1.21365 0.94089 0.90959 1.52350 0.92171 1.19855 0.88558 0.84381 0.93874 1.87864 1.35463 1.14188 1.95323 1.22658 0.94543 0.83322 1.01827 1.23176 0.93000 0.99127 0.83920 1.86621 1.43999 1.54663 1.41778 1.20265 0.77763 0.77117 0.85721 1.90784 1.69527 1.39602 1.44100 1.19421 1.06763 1.08107 0.97587 1.24442 0.96349 0.97815 0.89612 1.77228 1.08462 1.04684 1.23310 1.48566 1.26062 1.25423 1.13287 1.22674 0.83623 0.95281 1.00587 1.22135 0.84653 0.95025 0.98348 1.92789 1.58841 1.85395 1.82582 1.23420 0.91698 0.97178 0.86703 0.92019 0.99057 0.99229 0.90021 0.92510 0.91009 0.87264 0.78266 0.83447 0.86782 0.89341 0.89767 0.75633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 2 C 0.01 0.44 5.46 84.65 0.46 0.91 16 3 Si 0.98 44.45 29.54 68.60 2.03 46.48 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -32.92 9.43 25.60 0.24 -32.68 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.65 5.69 71.24 0.41 12.06 16 10 O -0.41 -20.03 10.30 -145.57 -1.50 -21.53 16 11 C 0.05 1.92 6.33 71.98 0.46 2.38 16 12 C 0.08 2.52 5.85 71.98 0.42 2.94 16 13 O -0.35 -11.83 10.04 -54.03 -0.54 -12.38 16 14 C 0.54 16.25 7.95 70.20 0.56 16.81 16 15 O -0.55 -17.55 16.69 19.76 0.33 -17.22 16 16 C -0.31 -7.36 6.13 -20.16 -0.12 -7.48 16 17 C 0.11 2.54 11.87 85.66 1.02 3.56 16 18 N -0.32 -6.93 12.33 -56.25 -0.69 -7.63 16 19 N -0.36 -5.35 3.65 -346.24 -1.26 -6.61 16 20 C 0.10 0.70 6.94 86.38 0.60 1.30 16 21 C 0.05 0.53 7.73 71.98 0.56 1.08 16 22 F -0.21 -2.81 17.36 44.97 0.78 -2.03 16 23 C 0.16 2.60 11.25 84.30 0.95 3.55 16 24 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 27 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 28 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.20 4.70 8.06 -2.91 -0.02 4.67 16 32 H 0.15 0.08 8.06 -2.39 -0.02 0.06 16 33 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.23 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -75.68 332.71 6.05 -69.63 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: 1.09 Total: 2.29 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.54 Total: 4.42 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -1.67 Total: -69.65 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.71 Total: -51.12 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -75.68 6.05 -69.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815247509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.528 kcal (2) G-P(sol) polarization free energy of solvation -75.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds