Wall clock time and date at job start Tue Mar 31 2020 03:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 C 1.50702 * 109.46743 * 240.00604 * 2 1 3 5 5 H 1.08002 * 119.99441 * 239.99284 * 4 2 1 6 6 C 1.37875 * 120.00641 * 60.00188 * 4 2 1 7 7 N 1.31514 * 119.99481 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00577 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47293 * 59.99047 * 8 6 4 10 10 H 1.48497 * 109.47533 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46772 * 299.99795 * 8 6 4 12 12 C 1.52999 * 109.47258 * 120.00260 * 2 1 3 13 13 N 1.46497 * 109.46992 * 300.00045 * 12 2 1 14 14 C 1.34777 * 119.99525 * 179.97438 * 13 12 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 12 17 17 H 1.08998 * 108.86722 * 41.68655 * 16 14 13 18 18 C 1.52827 * 108.88905 * 283.19648 * 16 14 13 19 19 S 1.82048 * 108.22239 * 187.42242 * 18 16 14 20 20 C 1.81857 * 101.24643 * 61.39355 * 19 18 16 21 21 C 1.50141 * 109.06347 * 315.92111 * 20 19 18 22 22 O 1.21281 * 116.82803 * 200.54699 * 21 20 19 23 23 N 1.31774 * 126.34533 * 20.57224 * 21 20 19 24 24 H 1.08998 * 109.46912 * 299.99187 * 1 2 3 25 25 H 1.08994 * 109.47328 * 60.00002 * 1 2 3 26 26 H 1.09007 * 109.46697 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47465 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47749 * 300.00235 * 3 2 1 29 29 H 1.09003 * 109.46864 * 60.00231 * 3 2 1 30 30 H 0.97000 * 120.00289 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.46838 * 179.97438 * 12 2 1 32 32 H 1.09001 * 109.46617 * 60.00267 * 12 2 1 33 33 H 0.97000 * 120.00580 * 0.02562 * 13 12 2 34 34 H 1.09006 * 109.71148 * 307.10189 * 18 16 14 35 35 H 1.08992 * 109.71786 * 67.73981 * 18 16 14 36 36 H 1.08997 * 109.53742 * 196.04455 * 20 19 18 37 37 H 1.09004 * 109.53744 * 75.79768 * 20 19 18 38 38 H 0.96998 * 115.07806 * 173.50659 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8258 -2.5200 -4.0079 10 1 1.8259 -0.4202 -5.2206 11 1 3.8063 -1.1207 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4916 3.6694 15 8 2.5743 -1.4777 3.7806 16 6 1.3798 0.2223 4.8999 17 1 0.3402 0.5107 4.7442 18 6 2.2149 1.4847 5.1109 19 16 1.7513 2.2127 6.7137 20 6 2.2060 0.8732 7.8566 21 6 1.7383 -0.4357 7.2888 22 8 1.6128 -1.3567 8.0679 23 7 1.4513 -0.6814 6.0264 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 0.7082 1.1612 -3.4843 31 1 3.1300 -0.7217 1.2489 32 1 1.6768 -1.7490 1.2490 33 1 0.9938 0.7577 2.3565 34 1 3.2743 1.2280 5.1164 35 1 2.0129 2.1972 4.3113 36 1 1.7312 1.0418 8.8231 37 1 3.2888 0.8510 7.9798 38 1 1.2584 -1.6097 5.8217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822399341.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:57 Heat of formation + Delta-G solvation = -91.186995 kcal Electronic energy + Delta-G solvation = -20864.134729 eV Core-core repulsion = 17638.977079 eV Total energy + Delta-G solvation = -3225.157650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.79603 -40.55061 -38.27453 -36.76137 -35.11309 -32.95101 -31.66066 -31.12947 -27.62425 -27.51828 -27.10747 -25.56447 -22.20344 -21.06817 -20.61591 -19.36968 -18.31090 -18.00843 -17.72793 -17.25628 -16.62417 -16.60121 -16.16367 -16.12731 -15.49780 -15.00221 -14.77952 -14.68987 -14.21663 -14.10232 -13.93888 -13.46816 -13.16524 -13.06472 -12.85588 -12.66137 -12.62826 -12.22634 -12.13564 -11.99626 -11.51042 -11.45594 -11.21262 -10.82696 -10.69207 -10.38409 -10.35641 -10.02576 -8.89037 -8.01372 -6.16530 0.33204 0.92828 1.38067 1.44116 1.46660 1.48284 1.51966 1.76320 2.31272 2.48905 3.08853 3.22836 3.33620 3.59635 3.80500 4.04626 4.29997 4.36001 4.43367 4.52063 4.53955 4.74789 5.01004 5.09547 5.11665 5.23210 5.29987 5.34829 5.56568 5.69478 5.71333 6.07674 6.20157 6.24711 6.45569 6.50896 6.81569 6.87783 7.13917 7.51389 8.96757 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.036241 B = 0.003524 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.409934 B = 7944.300100 C = 8366.602243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.896 5.896 8 Si 0.939 3.061 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.278 1.278 12 C 0.147 3.853 13 N -0.695 5.695 14 C 0.501 3.499 15 O -0.577 6.577 16 C 0.136 3.864 17 H 0.141 0.859 18 C -0.098 4.098 19 S -0.204 6.204 20 C -0.103 4.103 21 C 0.526 3.474 22 O -0.589 6.589 23 N -0.694 5.694 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.016 0.984 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.260 0.740 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.414 0.586 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.140 0.860 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 6.663 15.311 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.767 3.233 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.203 1.203 12 C 0.024 3.976 13 N -0.347 5.347 14 C 0.284 3.716 15 O -0.457 6.457 16 C 0.026 3.974 17 H 0.158 0.842 18 C -0.247 4.247 19 S 0.024 5.976 20 C -0.253 4.253 21 C 0.312 3.688 22 O -0.470 6.470 23 N -0.343 5.343 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.253 0.747 34 H 0.118 0.882 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.158 0.842 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.700 6.971 15.921 17.394 hybrid contribution 0.688 -1.945 -1.725 2.689 sum -0.013 5.026 14.195 15.059 Atomic orbital electron populations 1.21691 0.97020 0.98680 1.00651 1.18367 0.93298 0.93219 0.90123 1.21678 0.97997 0.97563 1.00708 1.21257 1.31740 1.12186 0.91681 0.93859 1.25380 0.95183 0.95558 1.00765 1.69884 1.36830 1.23172 1.23601 0.85911 0.78635 0.78838 0.79964 1.20474 1.20976 1.20340 1.21321 0.97318 0.95151 0.83851 1.46027 1.52074 1.31798 1.04779 1.21000 0.80534 0.84598 0.85458 1.90739 1.39577 1.28329 1.87071 1.20951 1.03638 0.89547 0.83294 0.84197 1.23781 1.03062 0.97819 1.00009 1.87378 1.84336 1.24783 1.01115 1.23666 1.08101 0.90423 1.03103 1.19794 0.76440 0.91053 0.81526 1.90810 1.55029 1.45636 1.55574 1.44722 1.68964 1.13818 1.06787 0.93829 0.92098 0.96457 0.96224 0.92162 0.93670 0.93077 0.93852 0.94115 0.74743 0.88192 0.82337 0.82526 0.84230 0.76278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 8.08 71.98 0.58 -4.34 16 2 C 0.05 2.11 0.50 -52.93 -0.03 2.09 16 3 C -0.12 -4.80 8.08 71.98 0.58 -4.22 16 4 C -0.53 -26.48 8.01 25.60 0.21 -26.27 16 5 H 0.04 2.22 7.74 -2.91 -0.02 2.20 16 6 C 0.03 1.58 5.15 84.65 0.44 2.01 16 7 N -0.90 -45.62 9.35 21.45 0.20 -45.42 16 8 Si 0.94 41.15 29.54 68.60 2.03 43.18 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 C 0.15 5.48 4.50 86.38 0.39 5.87 16 13 N -0.70 -18.80 4.96 -463.07 -2.30 -21.09 16 14 C 0.50 13.20 6.91 87.66 0.61 13.81 16 15 O -0.58 -20.63 16.19 -3.04 -0.05 -20.68 16 16 C 0.14 2.45 3.33 44.54 0.15 2.59 16 17 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 18 C -0.10 -1.39 5.89 71.92 0.42 -0.96 16 19 S -0.20 -2.90 22.40 -56.49 -1.27 -4.16 16 20 C -0.10 -1.55 6.61 71.06 0.47 -1.08 16 21 C 0.53 12.02 7.65 87.94 0.67 12.70 16 22 O -0.59 -18.28 17.60 -3.03 -0.05 -18.34 16 23 N -0.69 -15.27 4.64 -454.79 -2.11 -17.38 16 24 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 25 H 0.06 2.80 6.07 -2.39 -0.01 2.79 16 26 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 2.74 6.07 -2.39 -0.01 2.72 16 29 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 30 H 0.26 12.87 8.31 -92.71 -0.77 12.10 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.41 8.95 6.16 -92.71 -0.57 8.38 16 34 H 0.10 1.56 8.13 -2.38 -0.02 1.54 16 35 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.16 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.40 10.16 7.85 -92.71 -0.73 9.43 16 Total: -1.00 -63.33 319.91 0.73 -62.60 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.21 Total: 19.11 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 4.49 Total: 2.19 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -4.20 Total: -83.90 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.10 Total: -39.02 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -1.27 Total: -4.16 kcal Total: -63.33 0.73 -62.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399341.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.585 kcal (2) G-P(sol) polarization free energy of solvation -63.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds