Wall clock time and date at job start Tue Mar 31 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39638 * 120.48928 * 297.45767 * 3 2 1 5 5 N 1.31754 * 120.87870 * 180.27757 * 4 3 2 6 6 C 1.31729 * 122.04274 * 359.47236 * 5 4 3 7 7 C 1.39603 * 120.87925 * 0.53310 * 6 5 4 8 8 C 1.47856 * 120.49678 * 179.76509 * 7 6 5 9 9 O 1.21551 * 119.99572 * 17.98578 * 8 7 6 10 10 N 1.34773 * 120.00100 * 197.99434 * 8 7 6 11 11 C 1.47419 * 125.64783 * 5.37808 * 10 8 7 12 12 C 1.55129 * 104.72235 * 155.82091 * 11 10 8 13 13 C 1.55160 * 101.48738 * 37.29188 * 12 11 10 14 14 O 1.42891 * 110.71886 * 82.69779 * 13 12 11 15 15 C 1.50702 * 110.87446 * 205.90235 * 13 12 11 16 16 H 1.08003 * 120.00265 * 118.92167 * 15 13 12 17 17 C 1.37882 * 119.99591 * 298.93122 * 15 13 12 18 18 N 1.31514 * 119.99471 * 184.97137 * 17 15 13 19 19 Si 1.86791 * 120.00282 * 4.96506 * 17 15 13 20 20 H 1.48503 * 109.46902 * 88.96345 * 19 17 15 21 21 H 1.48499 * 109.47210 * 208.96080 * 19 17 15 22 22 H 1.48496 * 109.47559 * 328.96538 * 19 17 15 23 23 C 1.47026 * 125.64450 * 185.68545 * 10 8 7 24 24 C 1.39679 * 120.49250 * 117.48381 * 3 2 1 25 25 H 4.52732 * 13.92910 * 359.97438 * 4 2 1 26 26 H 1.07994 * 119.56118 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.56207 * 180.24295 * 6 5 4 28 28 H 1.09003 * 110.36602 * 274.74164 * 11 10 8 29 29 H 1.08997 * 110.36981 * 37.07149 * 11 10 8 30 30 H 1.09009 * 111.19099 * 279.18845 * 12 11 10 31 31 H 1.09001 * 110.94500 * 155.28663 * 12 11 10 32 32 H 0.96703 * 114.00298 * 185.02739 * 14 13 12 33 33 H 0.97006 * 119.99596 * 179.97438 * 18 17 15 34 34 H 1.08994 * 109.88203 * 300.43921 * 23 10 8 35 35 H 1.08997 * 109.88359 * 61.44929 * 23 10 8 36 36 H 1.08003 * 120.91208 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3148 -0.5539 1.0677 5 7 4.6323 -0.5526 1.0782 6 6 5.3385 -0.0437 0.0895 7 6 4.7113 0.5313 -1.0172 8 6 5.5124 1.1046 -2.1198 9 8 6.6833 0.8019 -2.2414 10 7 4.9443 1.9630 -2.9898 11 6 3.5749 2.5008 -2.8961 12 6 3.6194 3.8330 -3.6897 13 6 4.5693 3.4641 -4.8597 14 8 3.8545 2.7924 -5.8987 15 6 5.2603 4.6907 -5.3974 16 1 6.3373 4.7632 -5.3615 17 6 4.5175 5.7204 -5.9351 18 7 5.1228 6.7463 -6.4926 19 14 2.6517 5.6581 -5.8719 20 1 2.1783 6.2784 -4.6084 21 1 2.0921 6.4024 -7.0287 22 1 2.2013 4.2442 -5.9282 23 6 5.5856 2.5131 -4.1931 24 6 3.3145 0.5564 -1.0678 25 1 -1.0500 0.0002 0.0006 26 1 2.7758 -0.9859 1.8979 27 1 6.4172 -0.0674 0.1379 28 1 2.8642 1.8100 -3.3497 29 1 3.3114 2.6884 -1.8552 30 1 4.0380 4.6378 -3.0854 31 1 2.6292 4.0994 -4.0595 32 1 4.4153 2.4722 -6.6185 33 1 4.6002 7.4706 -6.8712 34 1 6.4832 3.0654 -3.9151 35 1 5.8447 1.7051 -4.8773 36 1 2.7974 0.9935 -1.9092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844019689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:35 Heat of formation + Delta-G solvation = 11.031104 kcal Electronic energy + Delta-G solvation = -22068.992227 eV Core-core repulsion = 18712.823136 eV Total energy + Delta-G solvation = -3356.169091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.00101 -40.61164 -39.12373 -36.43164 -35.32191 -34.52583 -33.75171 -31.88912 -31.54283 -30.11308 -27.57077 -25.74686 -25.19349 -23.87289 -22.07731 -21.32822 -19.74491 -19.33488 -18.36843 -17.99839 -17.68761 -17.12444 -16.79447 -16.55959 -16.38297 -15.58974 -15.30265 -15.08689 -14.92438 -14.72066 -14.55587 -14.11588 -14.01437 -13.53522 -13.13573 -13.04844 -12.92208 -12.66198 -12.45104 -12.16738 -11.83686 -11.77674 -11.46835 -10.99057 -10.94164 -10.82041 -10.59013 -10.37609 -9.96230 -9.73599 -8.37219 -6.53665 -0.60586 -0.24114 1.37595 1.46369 1.51272 1.66089 1.67760 1.80655 2.10247 2.38747 2.84593 2.98008 3.01859 3.26697 3.40291 3.46181 3.57313 3.67426 3.80711 3.95984 4.09587 4.15373 4.31403 4.34757 4.39149 4.72490 4.77092 4.80416 4.89727 4.97688 4.97991 5.04203 5.37727 5.42896 5.48023 6.05147 6.32892 6.52690 6.57584 6.68217 6.87655 7.10270 7.27804 8.77170 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.004924 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.018745 B = 5685.521428 C = 6662.124461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.207 4.207 3 C -0.041 4.041 4 C 0.146 3.854 5 N -0.494 5.494 6 C 0.159 3.841 7 C -0.184 4.184 8 C 0.572 3.428 9 O -0.575 6.575 10 N -0.604 5.604 11 C 0.100 3.900 12 C -0.134 4.134 13 C 0.220 3.780 14 O -0.571 6.571 15 C -0.555 4.555 16 H 0.035 0.965 17 C 0.037 3.963 18 N -0.936 5.936 19 Si 0.937 3.063 20 H -0.269 1.269 21 H -0.307 1.307 22 H -0.207 1.207 23 C 0.102 3.898 24 C -0.039 4.039 25 H 0.264 0.736 26 H 0.195 0.805 27 H 0.171 0.829 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.378 0.622 33 H 0.269 0.731 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 -13.725 13.432 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.207 4.207 3 C -0.043 4.043 4 C -0.011 4.011 5 N -0.201 5.201 6 C 0.001 3.999 7 C -0.190 4.190 8 C 0.362 3.638 9 O -0.456 6.456 10 N -0.335 5.335 11 C -0.022 4.022 12 C -0.171 4.171 13 C 0.179 3.821 14 O -0.379 6.379 15 C -0.593 4.593 16 H 0.053 0.947 17 C -0.163 4.163 18 N -0.575 5.575 19 Si 0.762 3.238 20 H -0.194 1.194 21 H -0.236 1.236 22 H -0.129 1.129 23 C -0.021 4.021 24 C -0.064 4.064 25 H 0.280 0.720 26 H 0.211 0.789 27 H 0.188 0.812 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.227 0.773 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.000 -14.008 14.432 23.420 hybrid contribution 0.073 0.991 -1.602 1.885 sum -11.927 -13.018 12.829 21.824 Atomic orbital electron populations 1.25866 0.96393 0.95423 0.95452 1.19689 0.91633 1.04598 1.04806 1.16929 0.89156 1.01936 0.96264 1.23691 0.89271 0.91608 0.96545 1.67885 1.08496 1.17167 1.26539 1.23117 1.01364 0.88713 0.86669 1.20656 0.94492 1.06134 0.97678 1.18065 0.86108 0.78313 0.81346 1.90752 1.17441 1.62551 1.74890 1.48453 1.16166 1.44059 1.24838 1.22935 0.82851 0.94798 1.01582 1.23203 1.00534 0.97064 0.96332 1.19755 0.88217 0.88339 0.85746 1.86420 1.39510 1.77144 1.34792 1.21429 0.93738 1.02173 1.41940 0.94651 1.25804 1.04240 0.93916 0.92384 1.70074 1.38590 1.10493 1.38318 0.86122 0.79621 0.81084 0.77016 1.19449 1.23559 1.12921 1.22589 0.97018 0.96476 0.85979 1.22772 0.92297 0.92841 0.98469 0.71991 0.78850 0.81183 0.88537 0.88119 0.89984 0.89499 0.77345 0.92258 0.92954 0.91514 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 19.25 74.32 1.43 0.16 16 2 C -0.21 -3.44 13.27 30.01 0.40 -3.04 16 3 C -0.04 -0.80 5.73 -21.35 -0.12 -0.93 16 4 C 0.15 2.73 10.91 85.04 0.93 3.65 16 5 N -0.49 -11.41 10.33 -193.76 -2.00 -13.41 16 6 C 0.16 4.06 10.75 85.04 0.91 4.97 16 7 C -0.18 -5.00 5.78 -20.03 -0.12 -5.12 16 8 C 0.57 19.62 7.72 86.79 0.67 20.29 16 9 O -0.58 -23.55 16.84 -3.88 -0.07 -23.62 16 10 N -0.60 -20.67 3.32 -814.76 -2.71 -23.37 16 11 C 0.10 2.84 4.93 86.93 0.43 3.27 16 12 C -0.13 -4.83 4.76 32.06 0.15 -4.68 16 13 C 0.22 9.21 0.67 -10.35 -0.01 9.20 16 14 O -0.57 -22.24 10.57 -148.98 -1.57 -23.81 16 15 C -0.56 -29.48 8.82 25.60 0.23 -29.25 16 16 H 0.04 2.13 7.82 -2.91 -0.02 2.11 16 17 C 0.04 2.02 5.47 84.66 0.46 2.49 16 18 N -0.94 -56.00 13.96 21.45 0.30 -55.70 16 19 Si 0.94 41.25 24.08 68.60 1.65 42.90 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.31 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.21 -8.35 5.20 99.48 0.52 -7.84 16 23 C 0.10 4.07 6.21 86.73 0.54 4.61 16 24 C -0.04 -0.87 7.95 22.99 0.18 -0.68 16 25 H 0.26 0.50 7.80 -4.42 -0.03 0.46 16 26 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 27 H 0.17 4.27 7.76 -2.91 -0.02 4.25 16 28 H 0.10 2.37 7.02 -2.39 -0.02 2.36 16 29 H 0.10 2.35 6.46 -2.39 -0.02 2.33 16 30 H 0.08 3.11 8.05 -2.38 -0.02 3.09 16 31 H 0.09 3.03 4.75 -2.39 -0.01 3.02 16 32 H 0.38 12.96 9.08 -74.06 -0.67 12.28 16 33 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 34 H 0.05 2.34 7.66 -2.39 -0.02 2.32 16 35 H 0.07 2.56 8.06 -2.39 -0.02 2.54 16 36 H 0.17 3.43 4.12 -2.91 -0.01 3.42 16 Total: -1.00 -70.84 305.70 1.96 -68.88 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.27 Total: 23.19 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.09 Total: 4.95 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -4.41 Total: -92.48 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -1.64 Total: -47.43 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.65 Total: 42.90 kcal Total: -70.84 1.96 -68.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844019689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.910 kcal (2) G-P(sol) polarization free energy of solvation -70.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds