Wall clock time and date at job start Tue Mar 31 2020 03:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47629 * 51.20766 * 3 2 1 5 5 C 1.36939 * 120.00276 * 272.57488 * 4 3 2 6 6 H 1.07996 * 119.99911 * 188.87921 * 5 4 3 7 7 C 1.38808 * 119.99650 * 8.88096 * 5 4 3 8 8 N 1.31618 * 120.00181 * 26.09808 * 7 5 4 9 9 Si 1.86803 * 120.00041 * 206.09653 * 7 5 4 10 10 H 1.48495 * 109.47112 * 89.99938 * 9 7 5 11 11 H 1.48498 * 109.47147 * 210.00430 * 9 7 5 12 12 H 1.48497 * 109.46860 * 330.00224 * 9 7 5 13 13 S 1.65606 * 120.00144 * 92.57023 * 4 3 2 14 14 O 1.42099 * 104.27722 * 153.93403 * 13 4 3 15 15 O 1.42106 * 104.27549 * 26.07525 * 13 4 3 16 16 C 1.81404 * 104.45100 * 270.00525 * 13 4 3 17 17 C 1.52997 * 109.47323 * 185.25695 * 16 13 4 18 18 N 1.46902 * 115.54996 * 322.39102 * 17 16 13 19 19 C 1.46898 * 111.00026 * 149.42645 * 18 17 16 20 20 C 1.46905 * 110.99583 * 273.37799 * 18 17 16 21 21 C 1.53003 * 117.51702 * 108.08118 * 17 16 13 22 22 C 1.52998 * 117.50236 * 176.71190 * 17 16 13 23 23 H 4.40637 * 5.51402 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.47189 * 291.20528 * 3 2 1 25 25 H 1.09004 * 109.47052 * 171.20933 * 3 2 1 26 26 H 0.97000 * 120.00201 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47259 * 65.25543 * 16 13 4 28 28 H 1.09004 * 109.46862 * 305.25919 * 16 13 4 29 29 H 1.09005 * 109.46566 * 177.28017 * 19 18 17 30 30 H 1.08990 * 109.47024 * 297.27610 * 19 18 17 31 31 H 1.08994 * 109.47127 * 57.28168 * 19 18 17 32 32 H 1.09000 * 109.47046 * 296.04655 * 20 18 17 33 33 H 1.08999 * 109.47246 * 56.04429 * 20 18 17 34 34 H 1.09000 * 109.47346 * 176.04562 * 20 18 17 35 35 H 1.08996 * 117.50234 * 214.97561 * 21 17 16 36 36 H 1.09002 * 117.50016 * 0.02562 * 21 17 16 37 37 H 1.09003 * 117.49166 * 359.97438 * 22 17 16 38 38 H 1.08998 * 117.49781 * 144.99394 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8644 -1.0765 5 6 3.3135 -2.2033 -0.8513 6 1 3.8064 -2.8145 -1.5928 7 6 2.8611 -2.7747 0.3300 8 7 1.8573 -2.2287 0.9831 9 14 3.6770 -4.3189 0.9930 10 1 4.7943 -3.9401 1.8949 11 1 2.6806 -5.1198 1.7486 12 1 4.2047 -5.1242 -0.1375 13 16 3.4713 -0.2232 -2.5658 14 8 4.4439 -1.1022 -3.1142 15 8 3.7810 1.1379 -2.2996 16 6 1.9089 -0.3537 -3.4783 17 6 2.1252 0.0909 -4.9262 18 7 3.0426 1.2232 -5.1110 19 6 3.7396 1.1310 -6.4008 20 6 2.3312 2.5026 -4.9873 21 6 2.1124 -0.9916 -6.0075 22 6 0.9373 -0.0196 -5.8841 23 1 -1.0498 -0.0001 -0.0004 24 1 3.0095 -0.3709 0.9581 25 1 3.0089 1.0164 -0.1571 26 1 1.5409 -2.6282 1.8084 27 1 1.1601 0.2852 -3.0101 28 1 1.5647 -1.3878 -3.4633 29 1 4.3759 2.0061 -6.5332 30 1 4.3525 0.2300 -6.4189 31 1 3.0075 1.0888 -7.2072 32 1 1.5971 2.5890 -5.7883 33 1 1.8239 2.5446 -4.0234 34 1 3.0448 3.3235 -5.0583 35 1 2.7846 -0.8635 -6.8558 36 1 1.9495 -2.0208 -5.6874 37 1 0.0018 -0.4094 -5.4828 38 1 0.8364 0.7481 -6.6513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867225948.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:28 Heat of formation + Delta-G solvation = 22.813716 kcal Electronic energy + Delta-G solvation = -22031.708803 eV Core-core repulsion = 18811.494595 eV Total energy + Delta-G solvation = -3220.214208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.41849 -38.00496 -37.57717 -36.36727 -34.82586 -33.70138 -32.82353 -30.35695 -28.39084 -28.25874 -25.69652 -25.09756 -23.32040 -20.53706 -19.99823 -19.51536 -18.59376 -18.22082 -17.81247 -16.68468 -16.41359 -16.23591 -16.01529 -15.62190 -15.24819 -14.95178 -14.68310 -14.16122 -13.97375 -13.83555 -13.54443 -13.26769 -12.99348 -12.89129 -12.65486 -12.62349 -12.53150 -12.47789 -12.19672 -12.17515 -12.10191 -11.95745 -11.49599 -11.23708 -10.90693 -10.85235 -10.51767 -10.00997 -9.36707 -8.24656 -5.76701 -0.16852 1.48457 1.53863 1.62219 2.02014 2.37661 2.47905 2.59590 2.77898 2.79960 2.93668 3.35280 3.58497 3.70209 3.75774 3.93627 3.98568 4.25700 4.37190 4.44072 4.48193 4.56732 4.59990 4.64382 4.69714 4.81389 4.91387 4.97117 4.98711 5.02715 5.09406 5.29907 5.48899 5.58866 5.93074 6.02390 6.44165 6.90536 7.23568 7.30599 8.68737 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.006434 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.415723 B = 4350.967736 C = 4674.123877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.148 4.148 3 C 0.239 3.761 4 N -0.837 5.837 5 C -0.308 4.308 6 H 0.105 0.895 7 C 0.003 3.997 8 N -0.851 5.851 9 Si 0.976 3.024 10 H -0.273 1.273 11 H -0.277 1.277 12 H -0.267 1.267 13 S 2.557 3.443 14 O -1.007 7.007 15 O -0.996 6.996 16 C -0.591 4.591 17 C 0.029 3.971 18 N -0.551 5.551 19 C 0.016 3.984 20 C 0.030 3.970 21 C -0.175 4.175 22 C -0.172 4.172 23 H 0.232 0.768 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.273 0.727 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 4.308 -9.312 10.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.151 4.151 3 C 0.113 3.887 4 N -0.662 5.662 5 C -0.448 4.448 6 H 0.122 0.878 7 C -0.205 4.205 8 N -0.489 5.489 9 Si 0.800 3.200 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.191 1.191 13 S 2.656 3.344 14 O -0.998 6.998 15 O -0.986 6.986 16 C -0.717 4.717 17 C -0.062 4.062 18 N -0.275 5.275 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.212 4.212 22 C -0.211 4.211 23 H 0.248 0.752 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.669 4.755 -9.188 10.684 hybrid contribution -1.318 -1.005 -0.017 1.657 sum -3.986 3.750 -9.205 10.709 Atomic orbital electron populations 1.25023 0.96139 1.04594 1.01271 1.23605 0.95040 0.96818 0.99629 1.18160 0.84599 0.92972 0.92950 1.54342 1.75188 1.15444 1.21214 1.19800 1.34090 0.85322 1.05581 0.87771 1.26017 0.95133 1.01577 0.97801 1.70296 1.20479 1.41123 1.17042 0.85190 0.78298 0.77886 0.78672 1.19810 1.20281 1.19093 1.09080 0.79407 0.72853 0.73060 1.93323 1.59742 1.66952 1.79747 1.93327 1.84992 1.36498 1.83746 1.30208 1.26963 1.08269 1.06238 1.21186 0.99229 0.96159 0.89647 1.61738 1.28319 1.02259 1.35194 1.22623 0.98580 1.03659 0.88284 1.22387 0.98160 0.89841 1.01370 1.23618 1.01924 0.95812 0.99889 1.23441 0.93465 1.02422 1.01808 0.75156 0.88532 0.89527 0.91678 0.86592 0.86271 0.89564 0.91549 0.92720 0.93157 0.92587 0.90067 0.86085 0.88201 0.87816 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.03 19.24 74.32 1.43 -8.60 16 2 C -0.15 -6.69 11.17 31.12 0.35 -6.34 16 3 C 0.24 11.27 5.42 84.57 0.46 11.73 16 4 N -0.84 -41.85 2.81 -352.54 -0.99 -42.84 16 5 C -0.31 -16.07 9.41 84.03 0.79 -15.28 16 6 H 0.10 5.55 7.16 -2.91 -0.02 5.52 16 7 C 0.00 0.14 4.86 84.86 0.41 0.55 16 8 N -0.85 -42.29 9.08 21.65 0.20 -42.09 16 9 Si 0.98 39.78 29.63 68.60 2.03 41.81 16 10 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 11 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 13 S 2.56 121.51 4.77 -56.49 -0.27 121.24 16 14 O -1.01 -53.49 16.76 -127.65 -2.14 -55.63 16 15 O -1.00 -49.35 16.09 -127.65 -2.05 -51.40 16 16 C -0.59 -23.08 6.40 71.98 0.46 -22.62 16 17 C 0.03 0.97 1.99 3.53 0.01 0.97 16 18 N -0.55 -17.99 3.83 -898.69 -3.44 -21.43 16 19 C 0.02 0.40 8.25 127.69 1.05 1.45 16 20 C 0.03 0.82 9.34 127.69 1.19 2.01 16 21 C -0.18 -4.85 9.10 30.60 0.28 -4.57 16 22 C -0.17 -4.28 9.13 30.59 0.28 -4.00 16 23 H 0.23 7.09 7.80 -4.43 -0.03 7.06 16 24 H 0.10 4.71 6.55 -2.39 -0.02 4.70 16 25 H 0.09 3.86 6.86 -2.39 -0.02 3.85 16 26 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 27 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 28 H 0.12 4.63 7.93 -2.39 -0.02 4.61 16 29 H 0.09 1.90 8.12 -2.38 -0.02 1.88 16 30 H 0.07 1.79 7.35 -2.39 -0.02 1.77 16 31 H 0.05 1.09 6.77 -2.39 -0.02 1.08 16 32 H 0.05 1.11 7.21 -2.39 -0.02 1.09 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.12 2.86 5.86 -2.39 -0.01 2.85 16 36 H 0.10 2.81 8.07 -2.39 -0.02 2.79 16 37 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.11 2.32 7.15 -2.39 -0.02 2.30 16 Total: -1.00 -64.53 326.30 1.09 -63.44 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 1.05 Total: 31.59 kcal Atomic # 6 Polarization: -51.39 SS G_CDS: 6.71 Total: -44.68 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -4.24 Total: -106.37 kcal Atomic # 8 Polarization: -102.84 SS G_CDS: -4.19 Total: -107.03 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Atomic # 16 Polarization: 121.51 SS G_CDS: -0.27 Total: 121.24 kcal Total: -64.53 1.09 -63.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867225948.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.255 kcal (2) G-P(sol) polarization free energy of solvation -64.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds