Wall clock time and date at job start Tue Mar 31 2020 03:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 110.01521 * 214.54723 * 3 2 1 5 5 S 1.65600 * 119.99735 * 50.90307 * 4 3 2 6 6 O 1.42098 * 106.40338 * 321.16214 * 5 4 3 7 7 O 1.42109 * 106.39950 * 188.24676 * 5 4 3 8 8 N 1.65599 * 107.22011 * 74.70892 * 5 4 3 9 9 C 1.46504 * 119.99519 * 264.10161 * 8 5 4 10 10 C 1.46498 * 120.00228 * 84.37681 * 8 5 4 11 11 C 1.50706 * 109.47174 * 261.73966 * 10 8 5 12 12 H 1.07994 * 119.99638 * 356.32506 * 11 10 8 13 13 C 1.37877 * 119.99832 * 176.32742 * 11 10 8 14 14 N 1.31509 * 119.99878 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99825 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47525 * 59.99537 * 15 13 11 17 17 H 1.48497 * 109.47180 * 179.97438 * 15 13 11 18 18 H 1.48512 * 109.47131 * 299.99850 * 15 13 11 19 19 C 1.54259 * 110.07811 * 335.96562 * 3 2 1 20 20 C 1.54895 * 104.19644 * 95.69747 * 19 3 2 21 21 C 1.54883 * 102.74820 * 37.94241 * 20 19 3 22 22 C 1.53874 * 110.03431 * 93.16125 * 3 2 1 23 23 H 4.41741 * 5.46550 * 179.97438 * 4 1 2 24 24 H 0.96995 * 119.99821 * 230.89732 * 4 3 2 25 25 H 1.08999 * 109.47306 * 264.70591 * 9 8 5 26 26 H 1.08993 * 109.47191 * 24.71245 * 9 8 5 27 27 H 1.08999 * 109.46923 * 144.70579 * 9 8 5 28 28 H 1.08998 * 109.46673 * 21.74081 * 10 8 5 29 29 H 1.09002 * 109.46857 * 141.74033 * 10 8 5 30 30 H 0.97004 * 120.00021 * 179.97438 * 14 13 11 31 31 H 1.08997 * 110.49296 * 214.37354 * 19 3 2 32 32 H 1.08998 * 110.48437 * 337.02298 * 19 3 2 33 33 H 1.09007 * 110.75288 * 279.62943 * 20 19 3 34 34 H 1.08990 * 110.75666 * 156.26190 * 20 19 3 35 35 H 1.08993 * 110.49221 * 203.38050 * 21 20 19 36 36 H 1.09006 * 110.48464 * 80.73540 * 21 20 19 37 37 H 1.09010 * 110.02780 * 359.94732 * 22 3 2 38 38 H 1.08995 * 110.03699 * 121.37654 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1469 1.1347 0.7806 5 16 2.5804 1.3990 2.3141 6 8 1.1906 1.1043 2.2848 7 8 3.0996 2.6573 2.7224 8 7 3.2786 0.2639 3.2971 9 6 2.5597 -0.9729 3.6133 10 6 4.6124 0.4990 3.8554 11 6 5.6408 -0.2175 3.0185 12 1 5.3271 -0.8388 2.1927 13 6 6.9819 -0.0800 3.3073 14 7 7.3637 0.6769 4.3127 15 14 8.2565 -0.9675 2.2696 16 1 8.1455 -0.5189 0.8583 17 1 9.6153 -0.6569 2.7818 18 1 8.0220 -2.4322 2.3433 19 6 3.1762 -1.3223 0.5901 20 6 3.4470 -2.2099 -0.6501 21 6 4.0050 -1.1968 -1.6802 22 6 3.1731 0.0806 -1.4434 23 1 -1.0502 -0.0002 -0.0004 24 1 3.8105 1.7306 0.3993 25 1 2.0372 -0.8569 4.5628 26 1 1.8378 -1.1853 2.8248 27 1 3.2695 -1.7968 3.6875 28 1 4.8236 1.5684 3.8536 29 1 4.6499 0.1229 4.8777 30 1 8.3073 0.7734 4.5161 31 1 4.0986 -1.1503 1.1447 32 1 2.4244 -1.7823 1.2315 33 1 2.5225 -2.6597 -1.0125 34 1 4.1874 -2.9766 -0.4222 35 1 3.8583 -1.5649 -2.6955 36 1 5.0614 -1.0043 -1.4921 37 1 2.3388 0.1180 -2.1440 38 1 3.8015 0.9631 -1.5632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882774498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:53 Heat of formation + Delta-G solvation = -19.552684 kcal Electronic energy + Delta-G solvation = -22382.202459 eV Core-core repulsion = 19160.151106 eV Total energy + Delta-G solvation = -3222.051353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.97701 -36.51695 -35.47460 -35.14069 -33.42293 -32.49285 -31.82531 -28.76615 -27.77541 -26.91988 -25.07638 -22.27757 -21.38671 -20.72136 -19.17625 -17.65582 -16.97925 -16.70842 -16.44538 -16.01770 -15.25363 -15.11236 -14.46482 -14.18036 -13.47282 -13.40629 -13.25832 -12.55588 -12.42667 -12.18967 -11.99538 -11.74952 -11.64978 -11.30587 -11.17097 -11.12367 -11.08590 -10.98380 -10.94253 -10.64331 -10.56404 -10.49592 -10.07752 -10.03467 -9.80323 -9.59557 -9.18955 -8.51267 -7.98819 -6.12291 -4.19469 1.36818 3.00813 3.12568 3.23592 3.29930 3.30170 3.72422 4.21612 4.34129 4.46997 4.66795 4.75900 4.99536 5.16131 5.21900 5.50097 5.53507 5.61477 5.66488 5.74669 5.86591 5.94114 5.95831 6.10620 6.13013 6.16644 6.28461 6.40261 6.48360 6.58392 6.62887 7.26032 7.42358 7.48375 7.69153 7.87448 7.96426 8.14907 8.86483 9.46590 10.95537 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.008595 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.889877 B = 3256.920716 C = 4291.369430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.196 4.196 3 C 0.297 3.703 4 N -1.112 6.112 5 S 2.784 3.216 6 O -0.987 6.987 7 O -0.985 6.985 8 N -0.996 5.996 9 C 0.102 3.898 10 C 0.245 3.755 11 C -0.541 4.541 12 H 0.068 0.932 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.157 4.157 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.114 4.114 23 H 0.214 0.786 24 H 0.417 0.583 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.265 0.735 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.528 -4.725 -10.204 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.198 4.198 3 C 0.207 3.793 4 N -0.869 5.869 5 S 2.792 3.208 6 O -0.971 6.971 7 O -0.969 6.969 8 N -0.838 5.838 9 C -0.045 4.045 10 C 0.122 3.878 11 C -0.580 4.580 12 H 0.086 0.914 13 C -0.140 4.140 14 N -0.527 5.527 15 Si 0.720 3.280 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.195 4.195 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.153 4.153 23 H 0.230 0.770 24 H 0.251 0.749 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.085 -4.066 -9.719 13.911 hybrid contribution 1.229 -0.488 -0.687 1.490 sum -7.857 -4.554 -10.406 13.811 Atomic orbital electron populations 1.24618 0.95490 0.98797 0.99261 1.22844 0.93851 1.01604 1.01491 1.17292 0.82820 0.86581 0.92570 1.56192 1.57797 1.38966 1.33972 1.01810 0.73075 0.73395 0.72543 1.93583 1.31283 1.85536 1.86687 1.93585 1.81175 1.41081 1.81077 1.57592 1.30083 1.32833 1.63283 1.21353 0.95803 0.87682 0.99652 1.19185 0.75556 0.98279 0.94734 1.21603 0.90943 1.29912 1.15535 0.91386 1.24971 0.98523 0.95219 0.95241 1.69928 1.16637 1.37976 1.28166 0.86654 0.80611 0.80092 0.80625 1.20062 1.21265 1.20169 1.23495 1.04034 0.93375 0.98645 1.22429 1.00727 0.97568 0.94981 1.22366 1.00052 0.94696 0.99038 1.22406 0.99820 0.99424 0.93621 0.76960 0.74922 0.93939 0.92110 0.91091 0.93111 0.94774 0.92522 0.86706 0.90617 0.91650 0.90970 0.91513 0.90832 0.90757 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 18.40 29.55 0.54 -1.83 16 2 C -0.20 -3.10 9.36 -37.12 -0.35 -3.45 16 3 C 0.30 4.53 0.98 -133.49 -0.13 4.40 16 4 N -1.11 -19.09 5.53 -0.83 0.00 -19.09 16 5 S 2.78 56.58 6.00 -107.50 -0.65 55.94 16 6 O -0.99 -20.32 13.51 -57.17 -0.77 -21.09 16 7 O -0.99 -23.47 16.80 -57.17 -0.96 -24.43 16 8 N -1.00 -20.54 2.68 -123.05 -0.33 -20.87 16 9 C 0.10 1.77 9.10 59.85 0.54 2.32 16 10 C 0.24 6.01 5.46 -5.19 -0.03 5.98 16 11 C -0.54 -13.63 9.36 -34.44 -0.32 -13.95 16 12 H 0.07 1.60 4.96 -52.49 -0.26 1.34 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 15 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 C -0.16 -2.37 4.43 -25.07 -0.11 -2.48 16 20 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 21 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 22 C -0.11 -1.41 6.22 -25.61 -0.16 -1.57 16 23 H 0.21 2.30 7.80 -54.08 -0.42 1.88 16 24 H 0.42 6.53 8.23 -34.47 -0.28 6.24 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.97 5.51 -51.93 -0.29 0.69 16 27 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 28 H 0.05 1.39 6.96 -51.93 -0.36 1.03 16 29 H 0.03 0.88 8.13 -51.93 -0.42 0.45 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.11 1.99 5.03 -51.93 -0.26 1.73 16 32 H 0.08 1.12 5.55 -51.93 -0.29 0.83 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.85 7.66 -51.92 -0.40 0.45 16 38 H 0.08 0.91 7.46 -51.93 -0.39 0.53 16 LS Contribution 315.61 15.07 4.76 4.76 Total: -1.00 -31.62 315.61 -7.73 -39.36 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.04 Total: 6.93 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.45 Total: -12.23 kcal Atomic # 7 Polarization: -64.73 SS G_CDS: 0.40 Total: -64.33 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.73 Total: -45.52 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 56.58 SS G_CDS: -0.65 Total: 55.94 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.62 -7.73 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882774498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.803 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds