Wall clock time and date at job start Tue Mar 31 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 110.01521 * 214.54723 * 3 2 1 5 5 S 1.65600 * 119.99735 * 50.90307 * 4 3 2 6 6 O 1.42098 * 106.40338 * 321.16214 * 5 4 3 7 7 O 1.42109 * 106.39950 * 188.24676 * 5 4 3 8 8 N 1.65599 * 107.22011 * 74.70892 * 5 4 3 9 9 C 1.46504 * 119.99519 * 264.10161 * 8 5 4 10 10 C 1.46498 * 120.00228 * 84.37681 * 8 5 4 11 11 C 1.50706 * 109.47174 * 261.73966 * 10 8 5 12 12 H 1.07994 * 119.99638 * 356.32506 * 11 10 8 13 13 C 1.37877 * 119.99832 * 176.32742 * 11 10 8 14 14 N 1.31509 * 119.99878 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 119.99825 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47525 * 59.99537 * 15 13 11 17 17 H 1.48497 * 109.47180 * 179.97438 * 15 13 11 18 18 H 1.48512 * 109.47131 * 299.99850 * 15 13 11 19 19 C 1.54259 * 110.07811 * 335.96562 * 3 2 1 20 20 C 1.54895 * 104.19644 * 95.69747 * 19 3 2 21 21 C 1.54883 * 102.74820 * 37.94241 * 20 19 3 22 22 C 1.53874 * 110.03431 * 93.16125 * 3 2 1 23 23 H 4.41741 * 5.46550 * 179.97438 * 4 1 2 24 24 H 0.96995 * 119.99821 * 230.89732 * 4 3 2 25 25 H 1.08999 * 109.47306 * 264.70591 * 9 8 5 26 26 H 1.08993 * 109.47191 * 24.71245 * 9 8 5 27 27 H 1.08999 * 109.46923 * 144.70579 * 9 8 5 28 28 H 1.08998 * 109.46673 * 21.74081 * 10 8 5 29 29 H 1.09002 * 109.46857 * 141.74033 * 10 8 5 30 30 H 0.97004 * 120.00021 * 179.97438 * 14 13 11 31 31 H 1.08997 * 110.49296 * 214.37354 * 19 3 2 32 32 H 1.08998 * 110.48437 * 337.02298 * 19 3 2 33 33 H 1.09007 * 110.75288 * 279.62943 * 20 19 3 34 34 H 1.08990 * 110.75666 * 156.26190 * 20 19 3 35 35 H 1.08993 * 110.49221 * 203.38050 * 21 20 19 36 36 H 1.09006 * 110.48464 * 80.73540 * 21 20 19 37 37 H 1.09010 * 110.02780 * 359.94732 * 22 3 2 38 38 H 1.08995 * 110.03699 * 121.37654 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1469 1.1347 0.7806 5 16 2.5804 1.3990 2.3141 6 8 1.1906 1.1043 2.2848 7 8 3.0996 2.6573 2.7224 8 7 3.2786 0.2639 3.2971 9 6 2.5597 -0.9729 3.6133 10 6 4.6124 0.4990 3.8554 11 6 5.6408 -0.2175 3.0185 12 1 5.3271 -0.8388 2.1927 13 6 6.9819 -0.0800 3.3073 14 7 7.3637 0.6769 4.3127 15 14 8.2565 -0.9675 2.2696 16 1 8.1455 -0.5189 0.8583 17 1 9.6153 -0.6569 2.7818 18 1 8.0220 -2.4322 2.3433 19 6 3.1762 -1.3223 0.5901 20 6 3.4470 -2.2099 -0.6501 21 6 4.0050 -1.1968 -1.6802 22 6 3.1731 0.0806 -1.4434 23 1 -1.0502 -0.0002 -0.0004 24 1 3.8105 1.7306 0.3993 25 1 2.0372 -0.8569 4.5628 26 1 1.8378 -1.1853 2.8248 27 1 3.2695 -1.7968 3.6875 28 1 4.8236 1.5684 3.8536 29 1 4.6499 0.1229 4.8777 30 1 8.3073 0.7734 4.5161 31 1 4.0986 -1.1503 1.1447 32 1 2.4244 -1.7823 1.2315 33 1 2.5225 -2.6597 -1.0125 34 1 4.1874 -2.9766 -0.4222 35 1 3.8583 -1.5649 -2.6955 36 1 5.0614 -1.0043 -1.4921 37 1 2.3388 0.1180 -2.1440 38 1 3.8015 0.9631 -1.5632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882774498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:51 Heat of formation + Delta-G solvation = -41.626048 kcal Electronic energy + Delta-G solvation = -22383.159632 eV Core-core repulsion = 19160.151106 eV Total energy + Delta-G solvation = -3223.008526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.09799 -38.21334 -37.20672 -36.85795 -34.59926 -34.43905 -33.02540 -29.86978 -29.54879 -28.06186 -26.76225 -24.15087 -22.50265 -21.72155 -20.62486 -19.11070 -18.62335 -18.33664 -18.14652 -17.32914 -16.83586 -16.27878 -16.11161 -15.36537 -15.13642 -14.93768 -14.44041 -14.02401 -13.99072 -13.76398 -13.41435 -13.37305 -13.25614 -12.98979 -12.85254 -12.58513 -12.51741 -12.32752 -12.29933 -12.01353 -11.96363 -11.68939 -11.62395 -11.39705 -11.12278 -10.98064 -10.56786 -10.46292 -9.71704 -8.13402 -6.27400 -0.24198 1.46511 1.48029 1.55326 1.74241 1.99124 2.23194 2.46298 2.71244 3.18560 3.34889 3.45873 3.65905 3.74037 4.07331 4.10666 4.47262 4.51453 4.60661 4.70586 4.75306 4.78789 4.84487 4.95602 5.01132 5.05926 5.09578 5.24338 5.25401 5.34998 5.45812 5.48079 5.55849 5.81914 5.89992 6.15061 6.17989 6.83841 6.88062 7.43196 8.94779 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.008595 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.889877 B = 3256.920716 C = 4291.369430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.231 4.231 3 C 0.287 3.713 4 N -1.107 6.107 5 S 2.796 3.204 6 O -0.989 6.989 7 O -1.026 7.026 8 N -0.999 5.999 9 C 0.097 3.903 10 C 0.258 3.742 11 C -0.539 4.539 12 H 0.086 0.914 13 C 0.008 3.992 14 N -0.932 5.932 15 Si 0.958 3.042 16 H -0.262 1.262 17 H -0.293 1.293 18 H -0.264 1.264 19 C -0.161 4.161 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.112 4.112 23 H 0.243 0.757 24 H 0.422 0.578 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.264 0.736 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -6.447 -12.542 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.233 4.233 3 C 0.199 3.801 4 N -0.867 5.867 5 S 2.804 3.196 6 O -0.973 6.973 7 O -1.011 7.011 8 N -0.840 5.840 9 C -0.048 4.048 10 C 0.135 3.865 11 C -0.578 4.578 12 H 0.104 0.896 13 C -0.191 4.191 14 N -0.572 5.572 15 Si 0.783 3.217 16 H -0.187 1.187 17 H -0.219 1.219 18 H -0.189 1.189 19 C -0.199 4.199 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.151 4.151 23 H 0.260 0.740 24 H 0.258 0.742 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.771 -5.807 -12.066 16.577 hybrid contribution 1.300 0.049 0.038 1.302 sum -8.471 -5.757 -12.028 15.798 Atomic orbital electron populations 1.25478 0.96466 0.97313 0.97949 1.23140 0.94439 1.02965 1.02768 1.17607 0.83075 0.85580 0.93812 1.55968 1.57928 1.39932 1.32824 1.01284 0.72865 0.72447 0.73001 1.93568 1.31298 1.85386 1.87008 1.93527 1.81808 1.43477 1.82242 1.57465 1.28747 1.34022 1.63781 1.21539 0.96017 0.86455 1.00817 1.18756 0.77607 0.96020 0.94142 1.21962 0.91006 1.29301 1.15561 0.89575 1.25862 1.00870 0.96013 0.96366 1.70083 1.16915 1.39974 1.30261 0.85600 0.77404 0.79337 0.79356 1.18651 1.21877 1.18902 1.23447 1.02614 0.94076 0.99774 1.22443 1.01684 0.97380 0.93732 1.22379 0.99300 0.93905 1.00226 1.22452 1.00508 1.00291 0.91871 0.74024 0.74245 0.92920 0.90440 0.90641 0.96586 0.96643 0.92718 0.89202 0.90776 0.90177 0.90421 0.88972 0.91547 0.89392 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 18.40 74.32 1.37 -2.68 16 2 C -0.23 -6.81 9.36 31.13 0.29 -6.52 16 3 C 0.29 8.26 0.98 2.52 0.00 8.26 16 4 N -1.11 -37.28 5.53 -156.53 -0.87 -38.14 16 5 S 2.80 114.03 6.00 -56.49 -0.34 113.70 16 6 O -0.99 -39.89 13.51 -128.00 -1.73 -41.62 16 7 O -1.03 -50.30 16.80 -128.00 -2.15 -52.45 16 8 N -1.00 -41.51 2.68 -543.22 -1.46 -42.96 16 9 C 0.10 3.32 9.10 127.77 1.16 4.48 16 10 C 0.26 13.07 5.46 85.64 0.47 13.54 16 11 C -0.54 -27.29 9.36 25.60 0.24 -27.05 16 12 H 0.09 3.98 4.96 -2.91 -0.01 3.97 16 13 C 0.01 0.42 5.46 84.66 0.46 0.89 16 14 N -0.93 -53.89 13.29 21.45 0.28 -53.61 16 15 Si 0.96 40.83 29.54 68.60 2.03 42.86 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 17 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 19 C -0.16 -4.54 4.43 31.67 0.14 -4.40 16 20 C -0.11 -2.47 6.91 31.88 0.22 -2.25 16 21 C -0.12 -2.39 6.83 31.67 0.22 -2.17 16 22 C -0.11 -2.50 6.22 31.32 0.19 -2.30 16 23 H 0.24 4.40 7.80 -4.41 -0.03 4.36 16 24 H 0.42 13.10 8.23 -96.75 -0.80 12.31 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 2.38 5.51 -2.39 -0.01 2.37 16 27 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 28 H 0.02 0.92 6.96 -2.39 -0.02 0.91 16 29 H 0.02 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.09 3.00 5.03 -2.39 -0.01 2.99 16 32 H 0.07 2.06 5.55 -2.39 -0.01 2.05 16 33 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.09 1.72 7.66 -2.38 -0.02 1.71 16 38 H 0.08 1.76 7.46 -2.39 -0.02 1.75 16 Total: -1.00 -68.13 315.61 0.81 -67.32 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.28 Total: 25.12 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 4.77 Total: -20.20 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -2.04 Total: -134.72 kcal Atomic # 8 Polarization: -90.18 SS G_CDS: -3.88 Total: -94.06 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 114.03 SS G_CDS: -0.34 Total: 113.70 kcal Total: -68.13 0.81 -67.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882774498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.690 kcal (2) G-P(sol) polarization free energy of solvation -68.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds