Wall clock time and date at job start Tue Mar 31 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00370 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 S 1.81401 * 109.47149 * 180.02562 * 4 3 2 6 6 O 1.42093 * 110.54547 * 291.62539 * 5 4 3 7 7 O 1.42105 * 110.53941 * 68.37879 * 5 4 3 8 8 N 1.65595 * 104.44822 * 179.97438 * 5 4 3 9 9 C 1.38824 * 120.00004 * 64.99949 * 8 5 4 10 10 C 1.39802 * 119.58531 * 179.97438 * 9 8 5 11 11 C 1.38596 * 119.48850 * 180.02562 * 10 9 8 12 12 C 1.38389 * 118.68193 * 0.02562 * 11 10 9 13 13 C 1.40552 * 119.14864 * 0.02562 * 12 11 10 14 14 C 1.41323 * 119.78300 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99856 * 359.97438 * 14 13 12 16 16 C 1.40028 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.30742 * 119.99797 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99470 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47457 * 59.99874 * 18 16 14 20 20 H 1.48501 * 109.46855 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47421 * 299.99185 * 18 16 14 22 22 N 1.31955 * 119.58368 * 359.73512 * 9 8 5 23 23 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46857 * 300.00103 * 1 2 3 25 25 H 1.09001 * 109.46918 * 59.99989 * 1 2 3 26 26 H 1.09002 * 109.46880 * 59.99856 * 3 2 1 27 27 H 1.08998 * 109.47064 * 300.00681 * 3 2 1 28 28 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 29 29 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 30 30 H 0.96997 * 120.00334 * 245.00088 * 8 5 4 31 31 H 1.07997 * 120.25440 * 359.97438 * 10 9 8 32 32 H 1.07998 * 120.66136 * 180.02562 * 11 10 9 33 33 H 1.08003 * 120.42345 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99113 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 16 4.2733 2.8418 0.0014 6 8 4.0288 3.4971 -1.2354 7 8 4.0276 3.4963 1.2386 8 7 5.9063 2.5670 0.0028 9 6 6.5074 1.9508 -1.0864 10 6 7.8868 1.7235 -1.0763 11 6 8.4849 1.1087 -2.1649 12 6 7.6918 0.7368 -3.2362 13 6 6.3108 0.9934 -3.1872 14 6 5.4882 0.6187 -4.2736 15 1 5.9212 0.1372 -5.1378 16 6 4.1118 0.8728 -4.2297 17 7 3.5878 1.4562 -3.1836 18 14 3.0247 0.3781 -5.6660 19 1 3.1122 -1.0901 -5.8704 20 1 1.6179 0.7538 -5.3743 21 1 3.4794 1.0770 -6.8948 22 7 5.7689 1.5828 -2.1161 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 3.8575 0.6435 -0.8891 29 1 3.8567 0.6438 0.8909 30 1 6.4429 2.8365 0.7646 31 1 8.4818 2.0255 -0.2271 32 1 9.5489 0.9236 -2.1770 33 1 8.1285 0.2562 -4.0992 34 1 2.6343 1.6318 -3.1532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886436140.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:35 Heat of formation + Delta-G solvation = -76.954118 kcal Electronic energy + Delta-G solvation = -21451.391099 eV Core-core repulsion = 18091.017538 eV Total energy + Delta-G solvation = -3360.373560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.53832 -37.72261 -36.38306 -35.16985 -34.66961 -33.23341 -31.46522 -30.53543 -28.88170 -26.40032 -25.61245 -23.08140 -21.81956 -21.45408 -18.64806 -18.03791 -17.25297 -16.25703 -16.24475 -16.00285 -15.33898 -14.95134 -14.64678 -14.57293 -14.44591 -13.89738 -13.24780 -13.06065 -12.88976 -12.29451 -11.95313 -11.61980 -11.44761 -11.32878 -11.25369 -11.14913 -11.11160 -11.02768 -10.79056 -10.62292 -10.49014 -10.11280 -10.05678 -9.54712 -9.29012 -8.22835 -7.83214 -7.25539 -6.49681 -4.60499 0.90583 2.70965 2.93082 3.07877 3.09616 3.18031 3.26189 3.91334 3.92542 4.48737 4.70801 4.95882 5.04836 5.24764 5.38837 5.41036 5.46583 5.48143 5.68879 5.78784 5.92811 6.06871 6.41575 6.56066 6.69000 6.72251 6.93993 7.18505 7.27662 7.45191 7.52178 7.66640 8.01247 8.14034 8.60336 8.83421 9.84659 10.23023 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.010100 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.668964 B = 2771.505767 C = 4518.754534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.379 6.379 3 C 0.086 3.914 4 C -0.622 4.622 5 S 2.623 3.377 6 O -0.899 6.899 7 O -0.990 6.990 8 N -1.036 6.036 9 C 0.386 3.614 10 C -0.341 4.341 11 C -0.033 4.033 12 C -0.295 4.295 13 C 0.288 3.712 14 C -0.420 4.420 15 H 0.087 0.913 16 C 0.068 3.932 17 N -0.694 5.694 18 Si 0.907 3.093 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 N -0.526 5.526 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.177 0.823 29 H 0.117 0.883 30 H 0.419 0.581 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 -1.494 5.076 6.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.297 6.297 3 C 0.008 3.992 4 C -0.751 4.751 5 S 2.714 3.286 6 O -0.888 6.888 7 O -0.980 6.980 8 N -0.784 5.784 9 C 0.148 3.852 10 C -0.369 4.369 11 C -0.058 4.058 12 C -0.318 4.318 13 C 0.163 3.837 14 C -0.451 4.451 15 H 0.105 0.895 16 C -0.160 4.160 17 N -0.314 5.314 18 Si 0.732 3.268 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.190 1.190 22 N -0.247 5.247 23 H 0.103 0.897 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.195 0.805 29 H 0.135 0.865 30 H 0.253 0.747 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.193 -0.624 5.055 7.274 hybrid contribution 0.645 -0.730 -0.170 0.989 sum -4.548 -1.354 4.885 6.810 Atomic orbital electron populations 1.22771 0.81484 1.02664 1.00029 1.87959 1.19215 1.27173 1.95375 1.21957 0.90685 0.85935 1.00621 1.30689 1.03989 1.26806 1.13588 1.04657 0.73630 0.76480 0.73806 1.93658 1.82383 1.69848 1.42956 1.93548 1.84556 1.72687 1.47227 1.53278 1.27577 1.72279 1.25261 1.18147 0.89343 0.90833 0.86872 1.20596 0.93487 1.20059 1.02732 1.20663 0.97484 0.94670 0.92959 1.21613 0.95362 1.14287 1.00544 1.18047 0.89028 0.87175 0.89413 1.19586 0.91720 1.32455 1.01371 0.89516 1.26042 0.99000 0.93913 0.97017 1.69992 1.12770 1.22423 1.26228 0.86385 0.78819 0.79873 0.81768 1.19008 1.20241 1.18977 1.68021 1.35567 1.20398 1.00735 0.89673 0.94187 0.93832 0.93165 0.91469 0.80501 0.86452 0.74678 0.88550 0.88237 0.88034 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -6.40 10.70 -35.23 -0.38 -6.78 16 3 C 0.09 1.46 5.95 37.16 0.22 1.68 16 4 C -0.62 -11.52 6.22 37.16 0.23 -11.28 16 5 S 2.62 51.83 5.09 -107.50 -0.55 51.29 16 6 O -0.90 -21.20 15.93 -57.54 -0.92 -22.12 16 7 O -0.99 -19.81 18.08 -57.54 -1.04 -20.85 16 8 N -1.04 -20.03 5.74 31.15 0.18 -19.85 16 9 C 0.39 8.81 7.24 -155.32 -1.12 7.68 16 10 C -0.34 -7.27 9.95 -38.86 -0.39 -7.66 16 11 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 12 C -0.30 -6.86 9.83 -38.65 -0.38 -7.24 16 13 C 0.29 7.42 6.55 -85.00 -0.56 6.86 16 14 C -0.42 -10.57 9.14 -37.74 -0.34 -10.91 16 15 H 0.09 2.03 7.85 -52.49 -0.41 1.62 16 16 C 0.07 1.63 5.50 -17.34 -0.10 1.53 16 17 N -0.69 -17.05 9.14 55.55 0.51 -16.54 16 18 Si 0.91 18.04 29.56 -169.99 -5.02 13.02 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 N -0.53 -13.31 4.93 -10.32 -0.05 -13.36 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.18 3.81 5.75 -51.92 -0.30 3.51 16 29 H 0.12 1.89 8.14 -51.92 -0.42 1.47 16 30 H 0.42 6.62 8.78 -34.47 -0.30 6.32 16 31 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 34 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 LS Contribution 305.72 15.07 4.61 4.61 Total: -1.00 -31.03 305.72 -8.34 -39.37 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -3.95 Total: 10.22 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -1.72 Total: -19.00 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.64 Total: -49.76 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -2.33 Total: -49.74 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.02 kcal Atomic # 16 Polarization: 51.83 SS G_CDS: -0.55 Total: 51.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.03 -8.34 -39.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886436140.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.587 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds