Wall clock time and date at job start Tue Mar 31 2020 03:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47313 * 2 1 4 4 H 1.09008 * 109.59714 * 331.66329 * 3 2 1 5 5 C 1.51337 * 109.73256 * 211.26782 * 3 2 1 6 6 O 1.21275 * 120.34982 * 128.40660 * 5 3 2 7 7 N 1.34251 * 119.29471 * 308.42944 * 5 3 2 8 8 C 1.46693 * 120.37801 * 357.10818 * 7 5 3 9 9 C 1.53030 * 109.07457 * 288.74054 * 8 7 5 10 10 C 1.51969 * 110.21728 * 88.58145 * 9 8 7 11 11 N 1.46067 * 111.76327 * 297.48691 * 10 9 8 12 12 C 1.34778 * 119.80484 * 242.98379 * 11 10 9 13 13 O 1.21287 * 119.99781 * 179.72649 * 12 11 10 14 14 C 1.50698 * 120.00314 * 359.72174 * 12 11 10 15 15 S 1.81001 * 109.47403 * 180.02562 * 14 12 11 16 16 C 1.76191 * 100.00175 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00285 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00275 * 179.72404 * 16 15 14 19 19 N 1.31632 * 119.99716 * 0.27313 * 18 16 15 20 20 Si 1.86795 * 120.00490 * 180.27726 * 18 16 15 21 21 H 1.48504 * 109.46964 * 59.99840 * 20 18 16 22 22 H 1.48498 * 109.47391 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46955 * 299.99784 * 20 18 16 24 24 H 1.08991 * 109.47281 * 300.00538 * 1 2 3 25 25 H 1.09004 * 109.46998 * 60.00653 * 1 2 3 26 26 H 1.08999 * 109.46979 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47763 * 239.99867 * 2 1 3 28 28 H 1.09004 * 109.47202 * 119.99860 * 2 1 3 29 29 H 0.97000 * 119.80807 * 177.13899 * 7 5 3 30 30 H 1.09005 * 109.53361 * 48.61916 * 8 7 5 31 31 H 1.08997 * 109.53996 * 168.85816 * 8 7 5 32 32 H 1.09002 * 109.35121 * 208.88155 * 9 8 7 33 33 H 1.08999 * 109.35844 * 328.45484 * 9 8 7 34 34 H 1.09004 * 108.93555 * 176.88993 * 10 9 8 35 35 H 1.08999 * 108.95023 * 58.09015 * 10 9 8 36 36 H 1.09003 * 109.47353 * 59.99928 * 14 12 11 37 37 H 1.08999 * 109.47353 * 300.00189 * 14 12 11 38 38 H 0.97001 * 120.00285 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3097 2.0885 -0.4874 5 6 3.3583 1.5183 -0.7394 6 8 3.5179 2.3305 -1.6258 7 7 4.3490 0.6767 -0.4039 8 6 4.1788 -0.2631 0.7095 9 6 4.1928 0.5148 2.0272 10 6 2.7879 0.9731 2.3815 11 7 2.2490 1.8905 1.3808 12 6 1.9473 3.1576 1.7270 13 8 1.5043 3.9238 0.8977 14 6 2.1603 3.6225 3.1446 15 16 1.6646 5.3571 3.2917 16 6 2.0083 5.6299 4.9981 17 1 2.4063 4.8290 5.6036 18 6 1.7734 6.8759 5.5629 19 7 1.2888 7.8522 4.8248 20 14 2.1450 7.1673 7.3701 21 1 3.5879 6.9245 7.6242 22 1 1.8097 8.5699 7.7246 23 1 1.3335 6.2395 8.1982 24 1 -0.3633 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.1823 0.6906 -0.9002 30 1 3.2273 -0.7846 0.6041 31 1 4.9945 -0.9861 0.7042 32 1 4.5755 -0.1266 2.8212 33 1 4.8402 1.3858 1.9258 34 1 2.8130 1.4755 3.3485 35 1 2.1381 0.1008 2.4516 36 1 3.2139 3.5220 3.4055 37 1 1.5591 3.0146 3.8206 38 1 1.1243 8.7228 5.2195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886512185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:10 Heat of formation + Delta-G solvation = -84.868140 kcal Electronic energy + Delta-G solvation = -21250.952924 eV Core-core repulsion = 18026.069281 eV Total energy + Delta-G solvation = -3224.883643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.19256 -40.11606 -38.24018 -35.83756 -34.70734 -34.58763 -32.22103 -31.03736 -28.06319 -27.55319 -26.86175 -24.31636 -22.37303 -21.46420 -20.44318 -19.63662 -18.63826 -18.31488 -17.69532 -17.08288 -16.88048 -16.28239 -16.16362 -15.66209 -15.21197 -15.09074 -14.75487 -14.62098 -14.41003 -14.21664 -13.69552 -13.64973 -13.22349 -13.15949 -12.96626 -12.85634 -12.63907 -12.52328 -12.21716 -12.15101 -11.73363 -11.53458 -11.12769 -11.10831 -10.94751 -10.27589 -10.08129 -9.78535 -8.69857 -8.34321 -6.14144 1.05127 1.32254 1.44468 1.45954 1.51360 1.59435 2.12220 2.27009 2.29308 2.99966 3.20949 3.32643 3.60685 3.78476 3.82597 3.88725 4.03788 4.21987 4.27232 4.37956 4.42438 4.45726 4.58243 4.63177 4.76130 4.82993 4.97859 5.01817 5.04425 5.31039 5.35854 5.40953 5.45842 5.84201 6.08577 6.18773 6.20160 7.03123 7.06350 7.11675 8.74887 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.025885 B = 0.004200 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.440107 B = 6665.456574 C = 6863.443893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.128 3.872 4 H 0.086 0.914 5 C 0.504 3.496 6 O -0.596 6.596 7 N -0.709 5.709 8 C 0.076 3.924 9 C -0.159 4.159 10 C 0.081 3.919 11 N -0.593 5.593 12 C 0.527 3.473 13 O -0.562 6.562 14 C -0.118 4.118 15 S -0.161 6.161 16 C -0.544 4.544 17 H 0.087 0.913 18 C 0.012 3.988 19 N -0.914 5.914 20 Si 1.001 2.999 21 H -0.261 1.261 22 H -0.281 1.281 23 H -0.258 1.258 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.404 0.596 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.664 -26.896 -2.636 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.020 3.980 4 H 0.104 0.896 5 C 0.289 3.711 6 O -0.475 6.475 7 N -0.361 5.361 8 C -0.045 4.045 9 C -0.198 4.198 10 C -0.040 4.040 11 N -0.328 5.328 12 C 0.315 3.685 13 O -0.439 6.439 14 C -0.269 4.269 15 S 0.067 5.933 16 C -0.692 4.692 17 H 0.105 0.895 18 C -0.192 4.192 19 N -0.550 5.550 20 Si 0.822 3.178 21 H -0.186 1.186 22 H -0.206 1.206 23 H -0.183 1.183 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.144 0.856 29 H 0.241 0.759 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.137 0.863 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.858 -25.217 -4.209 26.023 hybrid contribution 0.923 0.431 1.249 1.612 sum 5.781 -24.786 -2.960 25.623 Atomic orbital electron populations 1.21824 0.94343 1.03362 1.01482 1.22310 0.97448 0.91090 1.05827 1.21563 0.93540 1.00358 0.82496 0.89588 1.21483 0.87654 0.79571 0.82385 1.90740 1.83199 1.38755 1.34855 1.46033 1.16791 1.37802 1.35463 1.22678 1.07381 0.91179 0.83293 1.22339 0.95851 1.01528 1.00054 1.21941 0.96163 0.94799 0.91118 1.47835 1.64448 1.10773 1.09788 1.20441 0.76568 0.81883 0.89629 1.90724 1.45508 1.54661 1.53034 1.23357 1.06046 1.01496 0.95974 1.85775 1.85296 1.07345 1.14928 1.23156 1.50423 1.00969 0.94612 0.89507 1.26176 0.94025 0.94464 1.04555 1.70198 1.42782 1.03355 1.38690 0.84971 0.79311 0.77549 0.75955 1.18595 1.20629 1.18268 0.93522 0.93807 0.89183 0.88628 0.85640 0.75905 0.86625 0.85450 0.84914 0.93271 0.88653 0.86600 0.87437 0.86344 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.73 71.98 0.70 -1.61 16 2 C -0.13 -1.78 3.94 30.59 0.12 -1.66 16 3 C 0.13 3.34 2.43 44.42 0.11 3.45 16 4 H 0.09 3.01 6.84 -2.38 -0.02 3.00 16 5 C 0.50 14.53 6.86 87.94 0.60 15.13 16 6 O -0.60 -24.49 17.95 -3.01 -0.05 -24.54 16 7 N -0.71 -12.16 5.29 -462.57 -2.45 -14.61 16 8 C 0.08 0.54 6.34 86.35 0.55 1.08 16 9 C -0.16 -1.55 5.91 30.26 0.18 -1.37 16 10 C 0.08 1.18 5.45 86.12 0.47 1.65 16 11 N -0.59 -15.82 2.59 -803.51 -2.08 -17.90 16 12 C 0.53 20.83 7.69 87.66 0.67 21.50 16 13 O -0.56 -28.72 15.31 -3.05 -0.05 -28.76 16 14 C -0.12 -4.72 4.46 71.24 0.32 -4.40 16 15 S -0.16 -9.14 20.57 -56.49 -1.16 -10.30 16 16 C -0.54 -30.99 9.50 67.95 0.65 -30.34 16 17 H 0.09 4.50 7.80 -2.91 -0.02 4.47 16 18 C 0.01 0.71 5.49 84.86 0.47 1.17 16 19 N -0.91 -56.92 13.22 21.65 0.29 -56.63 16 20 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.04 0.80 8.12 -2.38 -0.02 0.78 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 1.05 7.72 -2.39 -0.02 1.03 16 28 H 0.13 0.86 3.44 -2.38 -0.01 0.85 16 29 H 0.40 6.21 8.93 -92.71 -0.83 5.38 16 30 H 0.12 0.45 3.66 -2.38 -0.01 0.44 16 31 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.05 0.82 8.04 -2.39 -0.02 0.80 16 34 H 0.10 1.49 5.69 -2.38 -0.01 1.48 16 35 H 0.12 0.84 6.36 -2.39 -0.02 0.82 16 36 H 0.11 3.89 7.83 -2.39 -0.02 3.87 16 37 H 0.12 4.07 7.71 -2.40 -0.02 4.05 16 38 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -91.53 316.63 1.62 -89.91 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.27 Total: 12.91 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 4.83 Total: 4.61 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -4.24 Total: -89.15 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.10 Total: -53.30 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.16 Total: -10.30 kcal Total: -91.53 1.62 -89.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886512185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.037 kcal (2) G-P(sol) polarization free energy of solvation -91.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds