Wall clock time and date at job start Tue Mar 31 2020 03:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46881 * 114.85870 * 3 2 1 5 5 C 1.46494 * 120.00058 * 270.00147 * 4 3 2 6 6 C 1.47209 * 109.46942 * 275.33358 * 5 4 3 7 7 N 5.27563 * 150.49705 * 59.56068 * 2 1 3 8 8 C 1.34770 * 119.99549 * 90.00219 * 4 3 2 9 9 O 1.21609 * 120.00388 * 5.00781 * 8 4 3 10 10 C 1.47435 * 119.99815 * 184.73547 * 8 4 3 11 11 C 1.41289 * 126.41388 * 314.84404 * 10 8 4 12 12 N 1.30454 * 108.01913 * 179.87959 * 11 10 8 13 13 N 1.39929 * 108.89893 * 0.37980 * 12 11 10 14 14 C 1.46496 * 125.75476 * 179.75563 * 13 12 11 15 15 C 1.50705 * 109.47243 * 270.00228 * 14 13 12 16 16 H 1.07994 * 119.99753 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99944 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99678 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47347 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47056 * 120.00184 * 19 17 15 22 22 H 1.48498 * 109.47177 * 240.00116 * 19 17 15 23 23 C 1.34267 * 108.49363 * 359.75488 * 13 12 11 24 24 C 1.50701 * 126.29193 * 179.97438 * 23 13 12 25 25 H 4.40640 * 5.51488 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47348 * 354.86084 * 3 2 1 27 27 H 1.09003 * 109.47296 * 234.85786 * 3 2 1 28 28 H 1.08996 * 109.46978 * 35.32864 * 5 4 3 29 29 H 1.08997 * 109.47333 * 155.33516 * 5 4 3 30 30 H 1.07997 * 125.99013 * 0.02562 * 11 10 8 31 31 H 1.08999 * 109.47191 * 29.99961 * 14 13 12 32 32 H 1.08998 * 109.47599 * 149.99944 * 14 13 12 33 33 H 0.96998 * 120.00171 * 180.02562 * 18 17 15 34 34 H 1.09000 * 109.46916 * 270.00014 * 24 23 13 35 35 H 1.09005 * 109.47023 * 29.99762 * 24 23 13 36 36 H 1.08991 * 109.47161 * 150.00232 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.5816 -1.2533 5 6 3.3785 -0.2791 -2.4133 6 6 4.7261 -0.8633 -2.3154 7 7 5.7655 -1.3163 -2.2400 8 6 3.3580 1.9077 -1.3390 9 8 3.2429 2.6089 -0.3521 10 6 3.7485 2.5076 -2.6280 11 6 4.7161 2.0065 -3.5274 12 7 4.7722 2.8137 -4.5507 13 7 3.8630 3.8590 -4.3537 14 6 3.6290 4.9747 -5.2739 15 6 4.5579 6.1111 -4.9321 16 1 5.2528 6.0123 -4.1114 17 6 4.5206 7.2769 -5.6674 18 7 3.6748 7.3970 -6.6672 19 14 5.6716 8.6857 -5.2432 20 1 6.5187 8.3016 -4.0857 21 1 6.5375 8.9863 -6.4116 22 1 4.8739 9.8891 -4.8957 23 6 3.2413 3.6672 -3.1793 24 6 2.1846 4.5548 -2.5739 25 1 -1.0501 -0.0002 0.0001 26 1 3.0098 -1.0227 0.0921 27 1 3.0090 0.5924 0.8404 28 1 2.6371 -1.0778 -2.4358 29 1 3.3040 0.3116 -3.3262 30 1 5.3042 1.1109 -3.3926 31 1 3.8161 4.6475 -6.2966 32 1 2.5958 5.3100 -5.1831 33 1 3.6488 8.2170 -7.1847 34 1 2.6600 5.3137 -1.9524 35 1 1.6178 5.0392 -3.3690 36 1 1.5119 3.9537 -1.9623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890401676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:42 Heat of formation + Delta-G solvation = 129.272426 kcal Electronic energy + Delta-G solvation = -21665.345109 eV Core-core repulsion = 18346.596097 eV Total energy + Delta-G solvation = -3318.749012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07733 -39.43890 -37.05619 -35.60914 -34.00815 -33.22057 -32.18230 -31.28905 -29.11771 -27.92240 -26.92207 -26.10126 -23.51272 -21.84291 -20.28003 -19.09597 -18.78415 -17.56457 -17.05233 -16.83120 -16.46908 -15.68843 -14.96425 -14.79959 -14.51354 -14.29405 -13.94224 -13.58786 -13.54973 -13.20886 -13.00185 -12.73439 -12.55586 -12.40617 -12.26298 -11.85721 -11.81973 -11.58061 -11.11512 -10.94841 -10.84731 -10.41885 -10.35947 -10.33895 -9.94772 -9.63103 -9.29372 -8.74047 -8.67860 -8.02387 -6.36696 -4.44353 1.93101 2.12714 2.52033 2.61767 2.67292 2.70372 3.16082 3.18659 3.24545 3.27069 3.33272 3.45691 3.80846 4.22822 4.24293 4.67587 4.78828 4.98427 5.04700 5.11534 5.18049 5.31249 5.49374 5.55810 5.75195 5.81245 5.95368 6.16794 6.28789 6.37438 6.69886 6.84186 7.03391 7.16472 7.29102 7.43161 7.52163 7.70838 7.73758 8.19553 8.29617 8.61739 9.23174 10.71516 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.004167 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.523500 B = 6717.299474 C = 7319.261439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.204 4.204 3 C 0.223 3.777 4 N -0.610 5.610 5 C 0.202 3.798 6 C 0.184 3.816 7 N -0.413 5.413 8 C 0.613 3.387 9 O -0.526 6.526 10 C -0.334 4.334 11 C 0.052 3.948 12 N -0.287 5.287 13 N -0.309 5.309 14 C 0.251 3.749 15 C -0.541 4.541 16 H 0.066 0.934 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.907 3.093 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.160 3.840 24 C -0.089 4.089 25 H 0.217 0.783 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.137 0.863 30 H 0.170 0.830 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.269 0.731 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 -14.099 8.872 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.205 4.205 3 C 0.102 3.898 4 N -0.344 5.344 5 C 0.075 3.925 6 C -0.136 4.136 7 N -0.090 5.090 8 C 0.404 3.596 9 O -0.400 6.400 10 C -0.350 4.350 11 C -0.135 4.135 12 N -0.108 5.108 13 N -0.086 5.086 14 C 0.134 3.866 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.205 1.205 23 C 0.023 3.977 24 C -0.147 4.147 25 H 0.234 0.766 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.155 0.845 30 H 0.187 0.813 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.719 -13.867 8.095 17.044 hybrid contribution -0.232 0.722 0.753 1.068 sum -5.951 -13.145 8.847 16.926 Atomic orbital electron populations 1.24954 0.95919 1.00594 0.98751 1.23466 0.94808 1.00648 1.01609 1.18279 0.83751 1.00037 0.87773 1.47720 1.67272 1.07132 1.12293 1.19125 0.85635 0.95426 0.92281 1.29914 0.95653 0.93822 0.94167 1.81251 1.11770 1.09140 1.06884 1.17543 0.74370 0.80124 0.87540 1.90763 1.51322 1.60308 1.37638 1.19520 1.12078 1.02795 1.00605 1.23722 0.98295 0.99537 0.91912 1.77186 1.11763 0.98610 1.23197 1.49380 1.25305 1.18868 1.15084 1.19892 0.98482 0.79970 0.88292 1.21295 1.21036 0.98225 1.17342 0.91538 1.24907 0.95716 0.98552 0.94382 1.69913 1.35806 1.27854 1.19126 0.86278 0.80448 0.81201 0.78686 1.19482 1.20555 1.20519 1.21330 0.95217 0.93634 0.87509 1.20456 0.95211 0.98240 1.00769 0.76605 0.88149 0.86949 0.85918 0.84537 0.81346 0.92379 0.92454 0.92143 0.89289 0.90355 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 19.25 29.55 0.57 -1.04 16 2 C -0.20 -2.01 13.68 -37.13 -0.51 -2.52 16 3 C 0.22 2.06 5.93 -6.83 -0.04 2.02 16 4 N -0.61 -6.74 2.39 -181.64 -0.43 -7.17 16 5 C 0.20 1.68 5.45 -6.83 -0.04 1.65 16 6 C 0.18 1.94 13.66 -20.75 -0.28 1.65 16 7 N -0.41 -5.46 18.54 42.17 0.78 -4.68 16 8 C 0.61 9.40 7.22 -12.52 -0.09 9.31 16 9 O -0.53 -9.55 16.38 5.27 0.09 -9.46 16 10 C -0.33 -5.70 5.13 -105.06 -0.54 -6.24 16 11 C 0.05 0.89 9.68 -16.98 -0.16 0.72 16 12 N -0.29 -5.97 12.50 30.86 0.39 -5.59 16 13 N -0.31 -6.63 3.56 -57.77 -0.21 -6.84 16 14 C 0.25 5.98 5.97 -5.19 -0.03 5.94 16 15 C -0.54 -14.29 9.39 -34.44 -0.32 -14.61 16 16 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -24.08 13.29 55.43 0.74 -23.34 16 19 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.16 3.02 7.00 -81.60 -0.57 2.45 16 24 C -0.09 -1.45 9.69 36.01 0.35 -1.10 16 25 H 0.22 1.18 7.80 -54.08 -0.42 0.76 16 26 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 27 H 0.11 1.15 7.36 -51.93 -0.38 0.77 16 28 H 0.12 0.57 8.11 -51.93 -0.42 0.15 16 29 H 0.14 1.23 5.38 -51.93 -0.28 0.95 16 30 H 0.17 2.47 5.65 -52.49 -0.30 2.17 16 31 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.06 1.34 7.02 -51.93 -0.36 0.97 16 33 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 34 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.24 7.05 -51.93 -0.37 0.87 16 36 H 0.08 1.12 7.96 -51.93 -0.41 0.71 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -32.25 331.84 -4.19 -36.44 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.75 Total: 0.06 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.77 Total: -0.06 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 1.26 Total: -47.62 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.25 -4.19 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890401676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.715 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds