Wall clock time and date at job start Tue Mar 31 2020 03:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46509 * 109.46881 * 114.85870 * 3 2 1 5 5 C 1.46494 * 120.00058 * 270.00147 * 4 3 2 6 6 C 1.47209 * 109.46942 * 275.33358 * 5 4 3 7 7 N 5.27563 * 150.49705 * 59.56068 * 2 1 3 8 8 C 1.34770 * 119.99549 * 90.00219 * 4 3 2 9 9 O 1.21609 * 120.00388 * 5.00781 * 8 4 3 10 10 C 1.47435 * 119.99815 * 184.73547 * 8 4 3 11 11 C 1.41289 * 126.41388 * 314.84404 * 10 8 4 12 12 N 1.30454 * 108.01913 * 179.87959 * 11 10 8 13 13 N 1.39929 * 108.89893 * 0.37980 * 12 11 10 14 14 C 1.46496 * 125.75476 * 179.75563 * 13 12 11 15 15 C 1.50705 * 109.47243 * 270.00228 * 14 13 12 16 16 H 1.07994 * 119.99753 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99944 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00269 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99678 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47347 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47056 * 120.00184 * 19 17 15 22 22 H 1.48498 * 109.47177 * 240.00116 * 19 17 15 23 23 C 1.34267 * 108.49363 * 359.75488 * 13 12 11 24 24 C 1.50701 * 126.29193 * 179.97438 * 23 13 12 25 25 H 4.40640 * 5.51488 * 179.97438 * 4 1 2 26 26 H 1.09003 * 109.47348 * 354.86084 * 3 2 1 27 27 H 1.09003 * 109.47296 * 234.85786 * 3 2 1 28 28 H 1.08996 * 109.46978 * 35.32864 * 5 4 3 29 29 H 1.08997 * 109.47333 * 155.33516 * 5 4 3 30 30 H 1.07997 * 125.99013 * 0.02562 * 11 10 8 31 31 H 1.08999 * 109.47191 * 29.99961 * 14 13 12 32 32 H 1.08998 * 109.47599 * 149.99944 * 14 13 12 33 33 H 0.96998 * 120.00171 * 180.02562 * 18 17 15 34 34 H 1.09000 * 109.46916 * 270.00014 * 24 23 13 35 35 H 1.09005 * 109.47023 * 29.99762 * 24 23 13 36 36 H 1.08991 * 109.47161 * 150.00232 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.5816 -1.2533 5 6 3.3785 -0.2791 -2.4133 6 6 4.7261 -0.8633 -2.3154 7 7 5.7655 -1.3163 -2.2400 8 6 3.3580 1.9077 -1.3390 9 8 3.2429 2.6089 -0.3521 10 6 3.7485 2.5076 -2.6280 11 6 4.7161 2.0065 -3.5274 12 7 4.7722 2.8137 -4.5507 13 7 3.8630 3.8590 -4.3537 14 6 3.6290 4.9747 -5.2739 15 6 4.5579 6.1111 -4.9321 16 1 5.2528 6.0123 -4.1114 17 6 4.5206 7.2769 -5.6674 18 7 3.6748 7.3970 -6.6672 19 14 5.6716 8.6857 -5.2432 20 1 6.5187 8.3016 -4.0857 21 1 6.5375 8.9863 -6.4116 22 1 4.8739 9.8891 -4.8957 23 6 3.2413 3.6672 -3.1793 24 6 2.1846 4.5548 -2.5739 25 1 -1.0501 -0.0002 0.0001 26 1 3.0098 -1.0227 0.0921 27 1 3.0090 0.5924 0.8404 28 1 2.6371 -1.0778 -2.4358 29 1 3.3040 0.3116 -3.3262 30 1 5.3042 1.1109 -3.3926 31 1 3.8161 4.6475 -6.2966 32 1 2.5958 5.3100 -5.1831 33 1 3.6488 8.2170 -7.1847 34 1 2.6600 5.3137 -1.9524 35 1 1.6178 5.0392 -3.3690 36 1 1.5119 3.9537 -1.9623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890401676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:41 Heat of formation + Delta-G solvation = 109.315757 kcal Electronic energy + Delta-G solvation = -21666.210495 eV Core-core repulsion = 18346.596097 eV Total energy + Delta-G solvation = -3319.614398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.49628 -40.60908 -38.06641 -36.58325 -35.82246 -34.16773 -33.73099 -32.76909 -30.04670 -29.25658 -28.48588 -27.21338 -25.33658 -23.14612 -21.61787 -20.37680 -19.64683 -18.85993 -18.64719 -17.96823 -17.40984 -17.16006 -16.45461 -16.15553 -15.86050 -15.52767 -15.09744 -14.74366 -14.61441 -14.29133 -14.26604 -13.95482 -13.88272 -13.72018 -13.53134 -13.46902 -13.09527 -12.99535 -12.72188 -12.64667 -12.32712 -11.91768 -11.82039 -11.53798 -11.02150 -10.89181 -10.75075 -10.32024 -10.25367 -9.50994 -8.37655 -6.52841 0.69649 1.09058 1.23857 1.35844 1.38914 1.49564 1.63036 1.73917 1.82469 2.00417 2.08359 2.32821 2.54579 2.95153 2.96791 3.54983 3.61344 3.68334 3.93896 4.13077 4.15793 4.34810 4.46166 4.50949 4.60988 4.68376 4.80910 4.90817 4.97313 5.15445 5.17496 5.31769 5.49965 5.55885 5.76359 6.03334 6.09490 6.45102 6.55981 6.77033 6.77683 7.04886 7.18368 8.70191 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.004167 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.523500 B = 6717.299474 C = 7319.261439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.237 4.237 3 C 0.223 3.777 4 N -0.599 5.599 5 C 0.202 3.798 6 C 0.209 3.791 7 N -0.459 5.459 8 C 0.616 3.384 9 O -0.558 6.558 10 C -0.327 4.327 11 C 0.072 3.928 12 N -0.327 5.327 13 N -0.332 5.332 14 C 0.267 3.733 15 C -0.557 4.557 16 H 0.048 0.952 17 C 0.029 3.971 18 N -0.913 5.913 19 Si 0.966 3.034 20 H -0.277 1.277 21 H -0.274 1.274 22 H -0.267 1.267 23 C 0.147 3.853 24 C -0.084 4.084 25 H 0.243 0.757 26 H 0.135 0.865 27 H 0.099 0.901 28 H 0.173 0.827 29 H 0.134 0.866 30 H 0.193 0.807 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.274 0.726 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 -15.225 9.838 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.238 4.238 3 C 0.102 3.898 4 N -0.331 5.331 5 C 0.076 3.924 6 C -0.110 4.110 7 N -0.137 5.137 8 C 0.406 3.594 9 O -0.435 6.435 10 C -0.342 4.342 11 C -0.115 4.115 12 N -0.147 5.147 13 N -0.109 5.109 14 C 0.149 3.851 15 C -0.595 4.595 16 H 0.066 0.934 17 C -0.173 4.173 18 N -0.551 5.551 19 Si 0.791 3.209 20 H -0.201 1.201 21 H -0.200 1.200 22 H -0.192 1.192 23 C 0.012 3.988 24 C -0.142 4.142 25 H 0.260 0.740 26 H 0.152 0.848 27 H 0.117 0.883 28 H 0.190 0.810 29 H 0.152 0.848 30 H 0.210 0.790 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.644 -15.041 9.065 18.776 hybrid contribution -0.009 0.948 0.510 1.076 sum -6.652 -14.093 9.575 18.290 Atomic orbital electron populations 1.25723 0.96800 0.99373 0.97216 1.23662 0.95296 1.01850 1.02983 1.18458 0.83898 1.01332 0.86105 1.47635 1.65749 1.05872 1.13834 1.19501 0.85675 0.96298 0.90901 1.30164 0.95449 0.92642 0.92746 1.81296 1.13200 1.10885 1.08349 1.17300 0.74347 0.81532 0.86190 1.90755 1.52888 1.61646 1.38233 1.19744 1.11291 1.02120 1.01052 1.24057 0.97478 0.99211 0.90708 1.77134 1.12882 0.99461 1.25228 1.49096 1.26828 1.19066 1.15912 1.19421 0.97892 0.80145 0.87691 1.21426 1.21387 0.99600 1.17067 0.93377 1.25621 0.96946 1.00590 0.94169 1.69975 1.36772 1.28696 1.19695 0.85381 0.78667 0.78703 0.78196 1.20140 1.19970 1.19196 1.21847 0.95559 0.94562 0.86850 1.20488 0.94858 0.98047 1.00789 0.74029 0.84783 0.88258 0.81009 0.84823 0.78992 0.94735 0.92355 0.91645 0.89967 0.90152 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 19.25 74.32 1.43 -1.07 16 2 C -0.24 -4.01 13.68 31.12 0.43 -3.59 16 3 C 0.22 3.53 5.93 84.57 0.50 4.04 16 4 N -0.60 -11.70 2.39 -846.85 -2.03 -13.73 16 5 C 0.20 2.71 5.45 84.58 0.46 3.17 16 6 C 0.21 3.87 13.66 89.44 1.22 5.10 16 7 N -0.46 -11.40 18.54 20.01 0.37 -11.03 16 8 C 0.62 17.96 7.22 86.67 0.63 18.58 16 9 O -0.56 -19.75 16.38 -4.06 -0.07 -19.82 16 10 C -0.33 -10.85 5.13 -20.15 -0.10 -10.95 16 11 C 0.07 2.41 9.68 85.65 0.83 3.23 16 12 N -0.33 -13.71 12.50 -56.27 -0.70 -14.42 16 13 N -0.33 -14.48 3.56 -336.70 -1.20 -15.68 16 14 C 0.27 13.12 5.97 85.64 0.51 13.64 16 15 C -0.56 -30.09 9.39 25.60 0.24 -29.85 16 16 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 17 C 0.03 1.51 5.46 84.65 0.46 1.97 16 18 N -0.91 -49.76 13.29 21.45 0.28 -49.48 16 19 Si 0.97 42.42 29.54 68.60 2.03 44.44 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 C 0.15 5.55 7.00 42.14 0.30 5.84 16 24 C -0.08 -2.72 9.69 71.24 0.69 -2.03 16 25 H 0.24 1.78 7.80 -4.41 -0.03 1.75 16 26 H 0.13 1.20 8.07 -2.39 -0.02 1.18 16 27 H 0.10 1.88 7.36 -2.39 -0.02 1.87 16 28 H 0.17 0.75 8.11 -2.39 -0.02 0.73 16 29 H 0.13 2.03 5.38 -2.39 -0.01 2.01 16 30 H 0.19 5.33 5.65 -2.91 -0.02 5.32 16 31 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 2.81 7.02 -2.39 -0.02 2.79 16 33 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 34 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.08 2.54 7.05 -2.38 -0.02 2.52 16 36 H 0.10 2.71 7.96 -2.39 -0.02 2.69 16 Total: -1.00 -70.76 331.84 7.39 -63.37 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.12 Total: 8.24 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 7.59 Total: 8.09 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -3.27 Total: -104.33 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.07 Total: -19.82 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -70.76 7.39 -63.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890401676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.686 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds