Wall clock time and date at job start Tue Mar 31 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86805 * 119.99980 * 2 1 4 4 H 1.48496 * 109.47045 * 269.99820 * 3 2 1 5 5 H 1.48495 * 109.47226 * 29.99992 * 3 2 1 6 6 H 1.48496 * 109.47053 * 150.00003 * 3 2 1 7 7 C 1.38793 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00114 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00430 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00200 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.46996 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00666 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99930 * 180.02562 * 11 10 9 14 14 C 1.47579 * 134.49253 * 179.97438 * 13 11 10 15 15 C 1.53946 * 86.23942 * 155.42448 * 14 13 11 16 16 N 1.46906 * 113.74015 * 138.00140 * 15 14 13 17 17 C 1.47009 * 110.99915 * 191.59588 * 16 15 14 18 18 C 1.53099 * 109.25618 * 177.61182 * 17 16 15 19 19 O 1.43009 * 109.25969 * 56.84734 * 18 17 16 20 20 C 1.43016 * 113.74187 * 301.33031 * 19 18 17 21 21 C 1.47017 * 110.99569 * 67.96132 * 16 15 14 22 22 C 1.47804 * 134.58296 * 359.95073 * 13 11 10 23 23 H 0.96998 * 119.99844 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47177 * 59.99802 * 10 9 7 25 25 H 1.08998 * 109.47151 * 300.00484 * 10 9 7 26 26 H 1.09000 * 113.76919 * 41.06560 * 14 13 11 27 27 H 1.09003 * 113.77047 * 269.78667 * 14 13 11 28 28 H 1.08995 * 113.74420 * 269.20152 * 15 14 13 29 29 H 1.08999 * 109.50931 * 297.54653 * 17 16 15 30 30 H 1.08996 * 109.50678 * 57.67533 * 17 16 15 31 31 H 1.09004 * 109.50363 * 296.91397 * 18 17 16 32 32 H 1.09004 * 109.54041 * 176.80808 * 18 17 16 33 33 H 1.09003 * 109.50498 * 298.73780 * 20 19 18 34 34 H 1.08991 * 109.54464 * 178.62709 * 20 19 18 35 35 H 1.08998 * 109.50752 * 302.32594 * 21 16 15 36 36 H 1.08999 * 109.50428 * 62.41492 * 21 16 15 37 37 H 1.09010 * 113.66890 * 90.27023 * 22 13 11 38 38 H 1.09006 * 113.93840 * 318.92109 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7724 -1.2020 -0.0001 10 6 4.0866 -2.9845 0.0001 11 6 5.5730 -3.2325 0.0002 12 8 6.3441 -2.2963 -0.0003 13 7 6.0457 -4.4947 -0.0001 14 6 7.3943 -5.0941 -0.0005 15 6 6.7348 -6.3298 0.6383 16 7 7.2162 -7.6058 0.0925 17 6 6.3674 -8.7217 0.5345 18 6 6.8678 -10.0203 -0.1035 19 8 8.2420 -10.2160 0.2407 20 6 9.0976 -9.1482 -0.1755 21 6 8.6197 -7.8407 0.4618 22 6 5.4236 -5.8355 0.0004 23 1 -0.4850 0.8400 -0.0004 24 1 3.6433 -3.4318 -0.8896 25 1 3.6440 -3.4314 0.8903 26 1 8.1014 -4.5854 0.6546 27 1 7.7939 -5.2758 -0.9982 28 1 6.7279 -6.3094 1.7281 29 1 6.4152 -8.8076 1.6201 30 1 5.3374 -8.5390 0.2283 31 1 6.7698 -9.9547 -1.1872 32 1 6.2772 -10.8590 0.2653 33 1 9.0643 -9.0573 -1.2612 34 1 10.1196 -9.3553 0.1413 35 1 9.2338 -7.0150 0.1025 36 1 8.7036 -7.9117 1.5463 37 1 5.2431 -6.2345 -0.9979 38 1 4.5567 -5.9207 0.6556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911651020.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:23 Heat of formation + Delta-G solvation = -32.142108 kcal Electronic energy + Delta-G solvation = -20108.582109 eV Core-core repulsion = 16885.984838 eV Total energy + Delta-G solvation = -3222.597271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67980 -39.35830 -37.63220 -35.06004 -32.45374 -31.64113 -30.58514 -28.49651 -26.54305 -26.21674 -25.57383 -24.11721 -21.61183 -20.70281 -19.16771 -17.80638 -17.28882 -16.76330 -16.51738 -15.73004 -15.65775 -15.37753 -15.09912 -15.03428 -14.85257 -14.42108 -13.88964 -13.12430 -12.95989 -12.90029 -12.81078 -12.68523 -12.52806 -12.02125 -11.93564 -11.79865 -11.27867 -11.01823 -10.95794 -10.91627 -10.62929 -10.12627 -9.86582 -9.52888 -9.01750 -8.92571 -8.68856 -8.51838 -6.93975 -6.30252 -4.02340 2.51438 2.88717 3.04362 3.32190 3.36961 3.49242 3.49913 3.57061 3.88625 4.31561 4.45516 4.48785 4.53571 4.72121 4.74027 4.78870 4.81373 4.96842 5.06293 5.08852 5.12121 5.22575 5.25088 5.33615 5.37413 5.39789 5.42741 5.54868 5.65416 5.77882 5.88610 5.99844 6.43233 6.51948 6.72369 7.70386 7.92855 8.39334 8.40181 9.15872 10.78973 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.045331 B = 0.002938 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.531883 B = 9527.525821 C =10053.855812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.116 4.116 11 C 0.557 3.443 12 O -0.517 6.517 13 N -0.649 5.649 14 C 0.121 3.879 15 C 0.040 3.960 16 N -0.525 5.525 17 C 0.016 3.984 18 C 0.064 3.936 19 O -0.387 6.387 20 C 0.064 3.936 21 C 0.016 3.984 22 C 0.116 3.884 23 H 0.271 0.729 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.094 0.906 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.622 -20.990 0.520 26.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.266 4.266 11 C 0.347 3.653 12 O -0.391 6.391 13 N -0.389 5.389 14 C -0.002 4.002 15 C -0.069 4.069 16 N -0.251 5.251 17 C -0.112 4.112 18 C -0.013 4.013 19 O -0.306 6.306 20 C -0.013 4.013 21 C -0.112 4.112 22 C -0.008 4.008 23 H 0.081 0.919 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.542 -19.393 0.111 25.490 hybrid contribution -0.968 -0.111 0.693 1.196 sum 15.574 -19.504 0.805 24.972 Atomic orbital electron populations 1.69937 1.05907 1.27792 1.48054 1.24710 0.94456 0.98973 0.93156 0.86732 0.81898 0.83250 0.79971 1.19170 1.19906 1.15918 1.22299 0.88158 0.97547 1.58823 0.89387 1.84795 1.09406 0.99955 1.97427 1.23211 0.93490 1.04197 1.05706 1.19964 0.90462 0.80112 0.74806 1.90711 1.58950 1.40870 1.48567 1.49784 1.09002 1.04398 1.75671 1.23064 0.86999 0.89012 1.01119 1.23765 0.96789 0.88504 0.97887 1.62397 1.02351 1.01532 1.58832 1.22796 0.98276 0.91343 0.98807 1.22677 0.82475 0.96460 0.99716 1.87992 1.18090 1.43622 1.80866 1.22667 0.94074 0.85455 0.99105 1.22788 0.89798 0.99330 0.99290 1.23227 0.95910 0.80141 1.01507 0.91914 0.88557 0.88605 0.90236 0.89180 0.90169 0.93620 0.89152 0.92074 0.88329 0.92093 0.88382 0.89273 0.93641 0.88776 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.89 27.74 -169.99 -4.72 17.17 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 10 C -0.12 -2.31 5.91 36.00 0.21 -2.10 16 11 C 0.56 10.50 8.08 -10.99 -0.09 10.41 16 12 O -0.52 -11.71 16.59 5.56 0.09 -11.61 16 13 N -0.65 -9.04 3.62 -177.52 -0.64 -9.68 16 14 C 0.12 1.30 7.78 -2.98 -0.02 1.28 16 15 C 0.04 0.34 3.34 -69.57 -0.23 0.11 16 16 N -0.52 -3.99 4.68 -227.89 -1.07 -5.05 16 17 C 0.02 0.11 5.58 -3.71 -0.02 0.09 16 18 C 0.06 0.42 7.01 37.21 0.26 0.68 16 19 O -0.39 -3.28 10.83 -35.23 -0.38 -3.66 16 20 C 0.06 0.42 7.01 37.21 0.26 0.68 16 21 C 0.02 0.11 5.55 -3.71 -0.02 0.09 16 22 C 0.12 1.14 7.78 -2.84 -0.02 1.12 16 23 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 25 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.52 7.66 -51.93 -0.40 0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.53 7.52 -51.93 -0.39 0.14 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -34.72 327.86 -8.31 -43.03 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -5.86 Total: -3.90 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 0.54 Total: 0.28 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: -0.93 Total: -40.58 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.29 Total: -15.28 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.72 -8.31 -43.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911651020.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.888 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds