Wall clock time and date at job start Tue Mar 31 2020 03:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.21029 * 2 1 4 4 N 1.45648 * 109.21285 * 240.62447 * 2 1 3 5 5 C 1.33388 * 124.59262 * 261.56059 * 4 2 1 6 6 O 1.21281 * 118.49142 * 175.66192 * 5 4 2 7 7 C 1.50439 * 123.01951 * 355.69161 * 5 4 2 8 8 H 1.09000 * 109.56764 * 252.88229 * 7 5 4 9 9 C 1.52999 * 109.66774 * 132.58313 * 7 5 4 10 10 N 1.47051 * 108.89223 * 12.70045 * 7 5 4 11 11 C 1.34772 * 121.35331 * 137.23848 * 10 7 5 12 12 O 1.21283 * 120.00151 * 5.49065 * 11 10 7 13 13 C 1.50700 * 120.00079 * 185.21094 * 11 10 7 14 14 S 1.80998 * 109.47390 * 174.79187 * 13 11 10 15 15 C 1.76195 * 100.00399 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99688 * 359.97438 * 15 14 13 17 17 C 1.38801 * 120.00407 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99841 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00042 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47443 * 90.00136 * 19 17 15 21 21 H 1.48508 * 109.46860 * 210.00034 * 19 17 15 22 22 H 1.48495 * 109.47018 * 329.99551 * 19 17 15 23 23 C 1.47275 * 117.29396 * 317.51667 * 10 7 5 24 24 H 1.08997 * 109.72182 * 180.92642 * 23 10 7 25 25 C 1.52999 * 109.71830 * 301.58007 * 23 10 7 26 26 H 1.09002 * 109.47153 * 179.37430 * 1 2 3 27 27 H 1.08997 * 109.47285 * 299.37139 * 1 2 3 28 28 H 1.09006 * 109.47418 * 59.37626 * 1 2 3 29 29 H 0.97003 * 117.70441 * 81.59302 * 4 2 1 30 30 H 1.09001 * 109.46809 * 290.01334 * 9 7 5 31 31 H 1.08997 * 109.46856 * 50.01028 * 9 7 5 32 32 H 1.08998 * 109.47009 * 170.00798 * 9 7 5 33 33 H 1.09003 * 109.47125 * 294.79282 * 13 11 10 34 34 H 1.08994 * 109.47412 * 54.78842 * 13 11 10 35 35 H 0.96995 * 120.00038 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.47387 * 59.99663 * 25 23 10 37 37 H 1.08997 * 109.47257 * 180.02562 * 25 23 10 38 38 H 1.09000 * 109.46977 * 299.99821 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 7 2.0093 -0.6747 -1.1985 5 6 2.4107 -1.9459 -1.2427 6 8 2.7138 -2.4200 -2.3171 7 6 2.5041 -2.8190 -0.0211 8 1 3.5515 -2.9720 0.2390 9 6 1.8432 -4.1700 -0.3020 10 7 1.8120 -2.1544 1.0932 11 6 1.0073 -2.8410 1.9282 12 8 0.9193 -4.0467 1.8309 13 6 0.2214 -2.1112 2.9870 14 16 -0.8710 -3.2765 3.8382 15 6 -1.6446 -2.1875 4.9872 16 1 -1.3805 -1.1403 5.0005 17 6 -2.5926 -2.6755 5.8759 18 7 -2.9133 -3.9520 5.8607 19 14 -3.4131 -1.5207 7.0935 20 1 -4.6409 -0.9497 6.4840 21 1 -3.7740 -2.2723 8.3224 22 1 -2.4766 -0.4223 7.4422 23 6 2.0291 -0.7068 1.2559 24 1 1.4750 -0.3469 2.1227 25 6 3.5215 -0.4265 1.4434 26 1 -0.3633 -1.0276 -0.0112 27 1 -0.3634 0.5040 0.8955 28 1 -0.3634 0.5235 -0.8844 29 1 2.0391 -0.1635 -2.0224 30 1 0.7643 -4.0371 -0.3817 31 1 2.2294 -4.5759 -1.2369 32 1 2.0652 -4.8594 0.5126 33 1 0.9082 -1.6652 3.7065 34 1 -0.3757 -1.3276 2.5209 35 1 -3.5760 -4.2930 6.4815 36 1 4.0699 -0.7780 0.5693 37 1 3.6775 0.6455 1.5638 38 1 3.8803 -0.9474 2.3311 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911790651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:31 Heat of formation + Delta-G solvation = -59.866117 kcal Electronic energy + Delta-G solvation = -21493.770855 eV Core-core repulsion = 18269.971381 eV Total energy + Delta-G solvation = -3223.799474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27675 -38.93745 -37.37700 -34.61177 -32.63060 -32.47574 -30.63404 -30.10527 -28.20074 -25.53493 -24.88603 -24.07871 -22.36232 -20.51242 -18.51879 -17.99012 -17.32246 -17.01442 -16.15764 -16.08003 -15.18678 -14.85309 -14.80176 -14.48988 -14.00165 -13.84474 -13.67178 -13.32857 -12.78231 -12.65725 -12.61918 -12.39738 -12.18398 -11.87918 -11.78885 -11.67031 -11.51678 -11.17551 -11.10218 -11.05810 -10.81581 -10.32242 -9.85322 -9.38490 -9.11418 -8.97844 -8.65972 -8.29080 -6.55919 -6.26557 -3.97717 2.40255 2.61452 2.86682 3.07009 3.18559 3.20677 3.26335 3.47491 4.14862 4.18683 4.24161 4.58152 4.63585 4.85778 4.96960 5.06881 5.08895 5.14578 5.17656 5.35306 5.47241 5.50979 5.54526 5.62759 5.75201 5.81869 5.88782 5.97505 6.07675 6.10777 6.22646 6.54620 6.62247 7.05394 7.38492 7.54319 7.97705 8.29729 8.43773 9.18862 10.80821 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.026428 B = 0.004583 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.230708 B = 6107.674883 C = 6616.894168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.128 3.872 3 H 0.097 0.903 4 N -0.711 5.711 5 C 0.517 3.483 6 O -0.547 6.547 7 C 0.138 3.862 8 H 0.100 0.900 9 C -0.138 4.138 10 N -0.618 5.618 11 C 0.541 3.459 12 O -0.501 6.501 13 C -0.153 4.153 14 S -0.057 6.057 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.075 3.925 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.122 3.878 24 H 0.117 0.883 25 C -0.164 4.164 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.397 0.603 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.930 11.028 -10.180 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.021 3.979 3 H 0.115 0.885 4 N -0.363 5.363 5 C 0.303 3.697 6 O -0.424 6.424 7 C 0.031 3.969 8 H 0.118 0.882 9 C -0.196 4.196 10 N -0.357 5.357 11 C 0.330 3.670 12 O -0.374 6.374 13 C -0.304 4.304 14 S 0.169 5.831 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C 0.018 3.982 24 H 0.135 0.865 25 C -0.222 4.222 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.233 0.767 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.757 8.681 -10.634 17.440 hybrid contribution -0.398 2.595 0.712 2.720 sum 10.360 11.276 -9.922 18.246 Atomic orbital electron populations 1.22334 0.94190 1.03603 1.02916 1.21319 0.95228 0.96568 0.84748 0.88460 1.45465 1.65878 1.12196 1.12759 1.20479 0.75903 0.82212 0.91073 1.90759 1.49975 1.71935 1.29712 1.21255 0.98789 0.93798 0.83025 0.88216 1.22106 1.01027 0.93568 1.02856 1.48408 1.48543 1.08311 1.30393 1.20293 0.78068 0.87639 0.81030 1.90719 1.63403 1.13743 1.69515 1.23620 1.02491 1.04857 0.99382 1.85437 1.45558 1.10890 1.41180 1.22840 1.27443 0.96628 1.21540 0.90939 1.24982 0.95915 0.95561 0.97013 1.70009 1.31089 1.12703 1.36387 0.86181 0.79459 0.80077 0.79869 1.20266 1.20735 1.19677 1.21617 0.97728 0.80740 0.98134 0.86532 1.22155 0.94546 1.02579 1.02899 0.91643 0.90657 0.91906 0.76714 0.91805 0.91940 0.88410 0.89115 0.89322 0.92128 0.92329 0.90792 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.24 37.16 0.34 -1.25 16 2 C 0.13 1.03 3.22 -68.64 -0.22 0.81 16 3 H 0.10 0.50 8.07 -51.93 -0.42 0.08 16 4 N -0.71 -6.89 4.90 -55.02 -0.27 -7.16 16 5 C 0.52 6.72 6.81 -11.73 -0.08 6.64 16 6 O -0.55 -8.82 17.01 5.56 0.09 -8.73 16 7 C 0.14 1.82 2.88 -68.91 -0.20 1.62 16 8 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 9 C -0.14 -2.09 7.63 37.16 0.28 -1.81 16 10 N -0.62 -8.15 2.53 -159.33 -0.40 -8.56 16 11 C 0.54 9.45 7.41 -10.99 -0.08 9.36 16 12 O -0.50 -10.42 12.06 5.55 0.07 -10.36 16 13 C -0.15 -2.85 4.54 36.01 0.16 -2.69 16 14 S -0.06 -1.48 20.58 -107.50 -2.21 -3.69 16 15 C -0.54 -14.63 9.50 30.94 0.29 -14.33 16 16 H 0.07 1.86 7.80 -52.48 -0.41 1.45 16 17 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 18 N -0.87 -25.50 13.22 55.49 0.73 -24.76 16 19 Si 0.92 20.72 29.55 -169.99 -5.02 15.70 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.12 1.17 2.50 -67.76 -0.17 1.00 16 24 H 0.12 1.07 5.97 -51.93 -0.31 0.76 16 25 C -0.16 -1.26 9.02 37.16 0.34 -0.93 16 26 H 0.06 0.81 7.99 -51.93 -0.42 0.39 16 27 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.40 3.27 8.80 -40.82 -0.36 2.91 16 30 H 0.06 1.08 7.39 -51.93 -0.38 0.70 16 31 H 0.06 0.90 7.57 -51.93 -0.39 0.51 16 32 H 0.10 1.60 6.38 -51.93 -0.33 1.27 16 33 H 0.09 1.56 7.87 -51.91 -0.41 1.15 16 34 H 0.09 1.50 7.72 -51.92 -0.40 1.10 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 0.48 6.83 -51.93 -0.35 0.12 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -33.76 320.53 -7.03 -40.79 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.42 Total: 1.53 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 0.57 Total: 0.41 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.06 Total: -40.47 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.16 Total: -19.09 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.76 -7.03 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911790651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.080 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds