Wall clock time and date at job start Tue Mar 31 2020 03:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37097 * 119.99838 * 2 1 4 4 H 1.08002 * 119.99696 * 155.93549 * 3 2 1 5 5 C 1.38942 * 120.00490 * 335.93432 * 3 2 1 6 6 N 1.31415 * 119.99893 * 348.42177 * 5 3 2 7 7 Si 1.86800 * 120.00473 * 168.69432 * 5 3 2 8 8 H 1.48499 * 109.47413 * 179.72772 * 7 5 3 9 9 H 1.48506 * 109.46970 * 299.72647 * 7 5 3 10 10 H 1.48498 * 109.47095 * 59.72238 * 7 5 3 11 11 C 1.34775 * 119.99564 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99733 * 180.02562 * 11 2 1 13 13 C 1.50693 * 120.00481 * 0.02562 * 11 2 1 14 14 H 1.09007 * 115.56003 * 34.24567 * 13 11 2 15 15 C 1.53136 * 117.51990 * 248.42527 * 13 11 2 16 16 C 1.52330 * 59.82724 * 252.55723 * 15 13 11 17 17 C 1.50552 * 121.92277 * 248.76743 * 16 15 13 18 18 C 1.37686 * 133.31658 * 36.30049 * 17 16 15 19 19 C 1.38370 * 119.98713 * 180.02562 * 18 17 16 20 20 C 1.38302 * 119.83134 * 359.93764 * 19 18 17 21 21 C 1.37934 * 120.35037 * 0.02562 * 20 19 18 22 22 C 1.39087 * 105.97677 * 216.29793 * 17 16 15 23 23 N 1.39621 * 110.25340 * 0.02562 * 22 17 16 24 24 C 1.34610 * 112.21419 * 0.02562 * 23 22 17 25 25 O 1.21278 * 126.61582 * 180.02562 * 24 23 22 26 26 H 1.08997 * 109.47208 * 92.91667 * 1 2 3 27 27 H 1.08997 * 109.47171 * 212.92122 * 1 2 3 28 28 H 1.09004 * 109.47079 * 332.91864 * 1 2 3 29 29 H 0.96995 * 120.00425 * 180.02562 * 6 5 3 30 30 H 1.08999 * 117.50999 * 0.02562 * 15 13 11 31 31 H 1.08997 * 117.51394 * 145.11648 * 15 13 11 32 32 H 1.07997 * 120.00322 * 0.02562 * 18 17 16 33 33 H 1.07994 * 120.08256 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.82841 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.90694 * 179.97438 * 21 20 19 36 36 H 0.96996 * 123.89269 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1601 1.2279 0.3814 5 6 1.5464 2.3383 -0.4907 6 7 0.4178 2.2544 -1.1586 7 14 2.3424 4.0044 -0.2075 8 1 1.5093 5.0635 -0.8316 9 1 2.4541 4.2580 1.2515 10 1 3.6964 4.0161 -0.8170 11 6 2.1388 -1.1672 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3853 -2.4723 0.0005 14 1 0.4464 -2.4733 -0.5532 15 6 1.4636 -3.3345 1.2637 16 6 2.2034 -3.7574 0.0010 17 6 1.7896 -4.9647 -0.7975 18 6 0.5681 -5.5223 -1.1023 19 6 0.5044 -6.6660 -1.8785 20 6 1.6695 -7.2453 -2.3472 21 6 2.8950 -6.6892 -2.0446 22 6 2.9681 -5.5385 -1.2625 23 7 4.0700 -4.8003 -0.8263 24 6 3.7090 -3.7404 -0.0791 25 8 4.4515 -2.9277 0.4299 26 1 -0.3633 -0.0523 -1.0263 27 1 -0.3633 -0.8626 0.5585 28 1 -0.3633 0.9150 0.4679 29 1 -0.0038 3.0579 -1.5015 30 1 2.0597 -2.9573 2.0946 31 1 0.5758 -3.9026 1.5413 32 1 -0.3400 -5.0671 -0.7356 33 1 -0.4528 -7.1049 -2.1181 34 1 1.6196 -8.1377 -2.9533 35 1 3.8004 -7.1477 -2.4140 36 1 4.9897 -5.0257 -1.0367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931241706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:28 Heat of formation + Delta-G solvation = -2.469211 kcal Electronic energy + Delta-G solvation = -22357.756870 eV Core-core repulsion = 19001.002361 eV Total energy + Delta-G solvation = -3356.754509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.67288 -40.31595 -39.21888 -37.32513 -36.57450 -36.19712 -33.57831 -31.69019 -30.10287 -28.43675 -27.14000 -26.43071 -24.45009 -23.43369 -22.41122 -21.44839 -19.93778 -18.85536 -18.69457 -18.34449 -17.36548 -16.88716 -16.49697 -16.26396 -16.14886 -15.74107 -15.36367 -15.03270 -14.90154 -14.72714 -14.09252 -13.81360 -13.63071 -13.34172 -13.10981 -13.04714 -12.85835 -12.65915 -12.43323 -12.16189 -12.11957 -11.94560 -11.69500 -11.44508 -11.16203 -10.98215 -10.06699 -9.65943 -9.60921 -8.89197 -8.33151 -5.97270 0.20005 0.45725 1.34390 1.37721 1.45214 1.48847 1.97247 2.05041 2.26307 2.79542 2.88935 2.99639 3.17174 3.33540 3.40227 3.55943 3.86378 4.06573 4.20359 4.26994 4.44388 4.50719 4.60906 4.63170 4.70778 4.77334 4.91797 5.06828 5.12358 5.26057 5.40117 5.43931 5.55344 5.64965 5.73918 5.94161 6.10879 6.17510 6.52550 7.11185 7.24209 7.49870 8.11605 8.69488 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.004536 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.084990 B = 6171.621613 C = 6673.095936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.463 5.463 3 C -0.342 4.342 4 H 0.062 0.938 5 C -0.001 4.001 6 N -0.896 5.896 7 Si 0.987 3.013 8 H -0.265 1.265 9 H -0.267 1.267 10 H -0.282 1.282 11 C 0.447 3.553 12 O -0.596 6.596 13 C -0.126 4.126 14 H 0.152 0.848 15 C -0.082 4.082 16 C -0.129 4.129 17 C -0.120 4.120 18 C -0.069 4.069 19 C -0.137 4.137 20 C -0.082 4.082 21 C -0.145 4.145 22 C 0.125 3.875 23 N -0.664 5.664 24 C 0.534 3.466 25 O -0.494 6.494 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.273 0.727 30 H 0.089 0.911 31 H 0.163 0.837 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.144 0.856 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -20.292 -1.495 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.183 5.183 3 C -0.470 4.470 4 H 0.080 0.920 5 C -0.202 4.202 6 N -0.535 5.535 7 Si 0.810 3.190 8 H -0.189 1.189 9 H -0.192 1.192 10 H -0.208 1.208 11 C 0.236 3.764 12 O -0.481 6.481 13 C -0.147 4.147 14 H 0.170 0.830 15 C -0.120 4.120 16 C -0.133 4.133 17 C -0.123 4.123 18 C -0.087 4.087 19 C -0.156 4.156 20 C -0.100 4.100 21 C -0.166 4.166 22 C 0.029 3.971 23 N -0.309 5.309 24 C 0.321 3.679 25 O -0.365 6.365 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.181 0.819 32 H 0.166 0.834 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.162 0.838 36 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -5.368 -19.559 -1.232 20.320 hybrid contribution 1.370 1.342 -0.146 1.923 sum -3.998 -18.217 -1.379 18.702 Atomic orbital electron populations 1.21427 0.79226 1.00735 1.00559 1.43740 1.06797 1.04139 1.63627 1.19491 0.99945 0.86290 1.41256 0.91976 1.26019 0.97107 1.02648 0.94470 1.70047 1.18815 1.30658 1.33963 0.85108 0.77848 0.77119 0.78881 1.18918 1.19218 1.20780 1.20255 0.87828 0.85445 0.82909 1.90737 1.15060 1.87215 1.55066 1.22089 1.00202 0.87107 1.05310 0.83043 1.23068 1.01889 0.98382 0.88623 1.20093 0.91879 0.95840 1.05481 1.19087 0.94671 0.95696 1.02808 1.20602 0.95346 0.95688 0.97041 1.21443 1.00129 0.95561 0.98457 1.21312 0.90662 0.99987 0.98060 1.20681 1.00768 0.94433 1.00696 1.18588 0.86059 0.94579 0.97911 1.43600 1.09439 1.26699 1.51128 1.19801 0.90492 0.79499 0.78106 1.90873 1.60537 1.37873 1.47240 0.93966 0.91099 0.92567 0.91682 0.89250 0.81888 0.83401 0.82120 0.81923 0.83785 0.74435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.55 8.19 127.77 1.05 6.59 16 2 N -0.46 -25.32 3.01 -658.90 -1.99 -27.31 16 3 C -0.34 -20.69 9.25 84.04 0.78 -19.91 16 4 H 0.06 4.08 7.43 -2.91 -0.02 4.06 16 5 C 0.00 -0.05 5.08 84.92 0.43 0.38 16 6 N -0.90 -48.94 10.75 21.66 0.23 -48.70 16 7 Si 0.99 44.66 29.57 68.60 2.03 46.69 16 8 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 C 0.45 23.69 7.41 87.66 0.65 24.34 16 12 O -0.60 -37.28 12.08 21.00 0.25 -37.03 16 13 C -0.13 -4.74 4.69 -11.72 -0.05 -4.80 16 14 H 0.15 4.77 7.31 -2.38 -0.02 4.75 16 15 C -0.08 -2.48 9.99 30.42 0.30 -2.17 16 16 C -0.13 -4.49 2.42 -54.13 -0.13 -4.62 16 17 C -0.12 -3.22 6.12 -19.84 -0.12 -3.34 16 18 C -0.07 -1.29 10.03 22.17 0.22 -1.07 16 19 C -0.14 -1.90 10.07 22.32 0.22 -1.67 16 20 C -0.08 -1.11 10.02 22.21 0.22 -0.89 16 21 C -0.14 -2.65 10.07 22.46 0.23 -2.43 16 22 C 0.13 3.31 7.12 38.36 0.27 3.58 16 23 N -0.66 -21.03 5.90 -303.37 -1.79 -22.82 16 24 C 0.53 22.32 7.77 87.71 0.68 23.01 16 25 O -0.49 -26.03 14.48 21.05 0.30 -25.72 16 26 H 0.04 1.93 7.78 -2.39 -0.02 1.91 16 27 H 0.07 2.48 6.81 -2.39 -0.02 2.46 16 28 H 0.06 2.68 6.83 -2.38 -0.02 2.67 16 29 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.16 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.42 11.10 8.96 -92.71 -0.83 10.27 16 Total: -1.00 -84.12 307.26 4.09 -80.03 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.30 Total: 17.87 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 4.75 Total: 17.00 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -3.54 Total: -98.84 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: 0.56 Total: -62.75 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -84.12 4.09 -80.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931241706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.556 kcal (2) G-P(sol) polarization free energy of solvation -84.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds