Wall clock time and date at job start Tue Mar 31 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00308 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00613 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00058 * 3 2 1 7 7 C 1.38817 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21493 * 120.00328 * 359.72056 * 13 12 11 15 15 C 1.48358 * 119.99626 * 179.72345 * 13 12 11 16 16 C 1.40169 * 119.19795 * 179.97438 * 15 13 12 17 17 C 1.36624 * 119.70212 * 179.97438 * 16 15 13 18 18 C 1.40604 * 118.20796 * 0.02562 * 17 16 15 19 19 C 1.40734 * 121.37097 * 180.02562 * 18 17 16 20 20 C 1.36578 * 118.13131 * 179.97438 * 19 18 17 21 21 C 1.39428 * 119.84866 * 0.02562 * 20 19 18 22 22 N 1.31015 * 121.83853 * 359.97438 * 21 20 19 23 23 C 1.33860 * 121.42682 * 359.97438 * 22 21 20 24 24 N 1.31886 * 119.20438 * 359.73122 * 15 13 12 25 25 H 0.96996 * 120.00458 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 28 28 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 29 29 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 30 30 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 31 31 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 32 32 H 1.07992 * 120.15083 * 359.97438 * 16 15 13 33 33 H 1.07995 * 120.89744 * 179.97438 * 17 16 15 34 34 H 1.08006 * 120.93568 * 359.95749 * 19 18 17 35 35 H 1.08000 * 120.07830 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.08336 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8198 -0.0008 12 7 1.7965 -6.0884 -0.0025 13 6 1.1226 -7.2556 -0.0078 14 8 -0.0923 -7.2557 -0.0060 15 6 1.8645 -8.5404 -0.0158 16 6 1.1468 -9.7444 -0.0206 17 6 1.8196 -10.9335 -0.0285 18 6 3.2252 -10.9018 -0.0309 19 6 3.9847 -12.0865 -0.0395 20 6 5.3463 -11.9786 -0.0419 21 6 5.9425 -10.7183 -0.0354 22 7 5.2320 -9.6176 -0.0274 23 6 3.8938 -9.6507 -0.0256 24 7 3.1832 -8.5219 -0.0230 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6855 -3.7149 0.8878 28 1 2.6841 -3.7140 -0.8922 29 1 0.4362 -4.7618 -0.8901 30 1 0.4384 -4.7622 0.8899 31 1 2.7665 -6.0883 -0.0044 32 1 0.0670 -9.7322 -0.0181 33 1 1.2861 -11.8724 -0.0319 34 1 3.5045 -13.0539 -0.0438 35 1 5.9597 -12.8675 -0.0480 36 1 7.0202 -10.6474 -0.0378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127810641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:04 Heat of formation + Delta-G solvation = 52.253710 kcal Electronic energy + Delta-G solvation = -20562.042597 eV Core-core repulsion = 17239.953802 eV Total energy + Delta-G solvation = -3322.088794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63768 -39.72908 -37.82039 -35.72012 -34.59476 -33.80253 -31.73567 -31.36528 -30.96798 -27.93695 -25.88711 -24.66396 -23.49620 -23.01391 -21.51879 -21.01702 -19.20084 -18.32325 -17.61326 -17.18953 -16.40701 -15.76854 -15.75648 -15.12979 -15.05056 -14.61125 -14.49674 -14.35147 -13.81494 -13.61660 -13.52109 -13.13544 -12.83071 -12.50217 -12.32361 -11.54618 -11.41138 -11.13289 -11.03121 -10.80454 -10.77578 -10.25705 -10.05728 -9.73014 -9.42627 -9.39939 -9.32784 -8.96797 -8.81144 -6.95423 -5.75912 -3.06293 -0.35195 0.08255 1.43878 2.03968 2.93430 3.00907 3.32977 3.45790 3.50701 3.52661 3.77035 3.94321 4.15575 4.20014 4.31906 4.45602 4.60652 4.65219 4.86239 4.89439 5.20718 5.36623 5.42959 5.54008 5.54945 5.67903 5.74109 5.79351 5.99672 6.12550 6.16660 6.47474 6.74750 6.75236 6.88931 7.52418 7.70652 7.72406 8.17119 8.41819 9.53168 10.07727 10.42878 11.46795 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.029632 B = 0.002701 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.701570 B =10362.617616 C =11286.851837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.108 3.892 12 N -0.696 5.696 13 C 0.563 3.437 14 O -0.528 6.528 15 C 0.152 3.848 16 C -0.128 4.128 17 C -0.047 4.047 18 C -0.144 4.144 19 C -0.046 4.046 20 C -0.174 4.174 21 C 0.159 3.841 22 N -0.457 5.457 23 C 0.302 3.698 24 N -0.435 5.435 25 H 0.256 0.744 26 H 0.386 0.614 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.413 0.587 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.695 -30.366 -0.067 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.015 3.985 11 C -0.015 4.015 12 N -0.346 5.346 13 C 0.346 3.654 14 O -0.404 6.404 15 C -0.005 4.005 16 C -0.149 4.149 17 C -0.074 4.074 18 C -0.149 4.149 19 C -0.073 4.073 20 C -0.194 4.194 21 C -0.019 4.019 22 N -0.166 5.166 23 C 0.064 3.936 24 N -0.148 5.148 25 H 0.066 0.934 26 H 0.220 0.780 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.249 0.751 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.776 -28.496 -0.052 29.817 hybrid contribution -0.133 -0.727 -0.021 0.739 sum 8.643 -29.223 -0.073 30.474 Atomic orbital electron populations 1.69664 1.05143 1.25802 1.57394 1.24776 0.95570 0.97803 1.02769 0.86143 0.78625 0.83589 0.77537 1.21644 1.21719 1.20687 1.19208 0.91089 0.83827 1.43172 0.90978 1.42181 1.05985 0.99546 1.89741 1.20767 0.93445 0.85484 0.98762 1.21706 0.95565 0.81345 1.02899 1.45840 1.11592 1.05390 1.71821 1.17807 0.86677 0.82946 0.77982 1.90809 1.12529 1.86876 1.50163 1.21568 0.88849 0.94882 0.95208 1.21880 1.03029 0.91310 0.98691 1.21474 0.92088 0.99243 0.94613 1.19745 0.95681 0.95746 1.03773 1.21504 0.94107 0.97561 0.94093 1.22072 0.95697 0.99806 1.01859 1.23178 1.00751 0.86936 0.91011 1.67659 1.05000 1.31820 1.12111 1.19209 0.90339 0.87101 0.97001 1.67397 1.06725 1.29941 1.10697 0.93400 0.78009 0.95532 0.95544 0.90819 0.90795 0.75099 0.82406 0.83187 0.83772 0.83734 0.81354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -19.00 5.60 -59.91 -0.34 -19.33 16 10 C 0.14 2.96 6.37 -4.04 -0.03 2.93 16 11 C 0.11 1.94 5.79 -4.04 -0.02 1.92 16 12 N -0.70 -10.94 5.54 -61.08 -0.34 -11.28 16 13 C 0.56 8.83 7.81 -12.09 -0.09 8.73 16 14 O -0.53 -9.49 16.28 5.37 0.09 -9.41 16 15 C 0.15 2.03 6.75 -82.95 -0.56 1.47 16 16 C -0.13 -1.31 9.54 -39.44 -0.38 -1.69 16 17 C -0.05 -0.37 9.89 -39.27 -0.39 -0.75 16 18 C -0.14 -1.31 5.75 -106.68 -0.61 -1.92 16 19 C -0.05 -0.26 9.90 -39.24 -0.39 -0.65 16 20 C -0.17 -0.86 10.04 -39.74 -0.40 -1.26 16 21 C 0.16 1.14 11.14 -17.46 -0.19 0.94 16 22 N -0.46 -5.39 10.43 -12.60 -0.13 -5.52 16 23 C 0.30 3.76 7.62 -157.91 -1.20 2.56 16 24 N -0.44 -6.08 9.56 -9.19 -0.09 -6.16 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.39 10.54 7.67 -40.82 -0.31 10.22 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.41 6.05 7.78 -40.82 -0.32 5.73 16 32 H 0.16 1.44 7.60 -52.49 -0.40 1.04 16 33 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.14 0.34 8.06 -52.48 -0.42 -0.09 16 35 H 0.14 0.22 8.06 -52.49 -0.42 -0.21 16 36 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -35.67 321.41 -8.73 -44.40 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -3.96 Total: 7.98 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -4.51 Total: 4.74 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -0.17 Total: -70.24 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.67 -8.73 -44.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127810641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.658 kcal (2) G-P(sol) polarization free energy of solvation -35.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds