Wall clock time and date at job start Tue Mar 31 2020 03:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48498 * 109.46958 * 240.00340 * 3 2 1 5 5 H 1.48507 * 109.46699 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99877 * 3 2 1 7 7 C 1.38815 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99854 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00194 * 179.97438 * 9 7 2 11 11 C 1.52989 * 109.47205 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47205 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00264 * 179.97438 * 12 11 10 14 14 O 1.21543 * 119.99669 * 0.28272 * 13 12 11 15 15 C 1.47896 * 119.99828 * 179.97438 * 13 12 11 16 16 N 1.32138 * 120.03592 * 359.73357 * 15 13 12 17 17 C 1.31978 * 122.76781 * 179.69526 * 16 15 13 18 18 C 1.37773 * 121.72745 * 0.58240 * 17 16 15 19 19 C 1.40386 * 118.72997 * 359.72059 * 18 17 16 20 20 C 1.40646 * 122.28005 * 180.02562 * 19 18 17 21 21 C 1.36641 * 117.95269 * 179.97438 * 20 19 18 22 22 C 1.39396 * 119.92580 * 0.02562 * 21 20 19 23 23 N 1.31209 * 121.85391 * 0.02686 * 22 21 20 24 24 C 1.33259 * 121.22071 * 359.94530 * 23 22 21 25 25 H 0.97001 * 120.00289 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00117 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46379 * 60.00224 * 10 9 7 28 28 H 1.09000 * 109.47020 * 300.00389 * 10 9 7 29 29 H 1.09001 * 109.47294 * 60.00754 * 11 10 9 30 30 H 1.08992 * 109.47573 * 300.00386 * 11 10 9 31 31 H 0.96999 * 119.99689 * 0.02562 * 12 11 10 32 32 H 1.08001 * 119.12964 * 180.32522 * 17 16 15 33 33 H 1.08001 * 120.63505 * 179.69283 * 18 17 16 34 34 H 1.07999 * 121.02121 * 359.93282 * 20 19 18 35 35 H 1.07999 * 120.04234 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.07844 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8196 0.0022 12 7 1.7963 -6.0884 0.0016 13 6 1.1224 -7.2556 0.0026 14 8 -0.0930 -7.2556 -0.0013 15 6 1.8619 -8.5364 0.0014 16 7 3.1833 -8.5372 -0.0059 17 6 3.8970 -9.6474 -0.0015 18 6 3.3031 -10.8905 -0.0007 19 6 1.9014 -10.9687 0.0013 20 6 1.2177 -12.1978 0.0027 21 6 -0.1485 -12.1708 0.0051 22 6 -0.8199 -10.9491 0.0055 23 7 -0.1767 -9.8055 0.0031 24 6 1.1552 -9.7621 0.0012 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 0.0016 27 1 2.6853 -3.7141 0.8912 28 1 2.6841 -3.7149 -0.8888 29 1 0.4369 -4.7622 -0.8876 30 1 0.4375 -4.7617 0.8923 31 1 2.7663 -6.0884 0.0013 32 1 4.9749 -9.5795 -0.0026 33 1 3.9043 -11.7877 -0.0020 34 1 1.7559 -13.1341 0.0013 35 1 -0.7076 -13.0948 0.0058 36 1 -1.8998 -10.9437 0.0069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129718938.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:06 Heat of formation + Delta-G solvation = 25.764806 kcal Electronic energy + Delta-G solvation = -20820.721449 eV Core-core repulsion = 17497.484010 eV Total energy + Delta-G solvation = -3323.237439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = -0.04 seconds Orbital eigenvalues (eV) -42.35091 -40.45768 -38.98790 -37.32936 -35.49930 -34.75414 -33.20460 -32.48784 -31.62044 -29.45973 -26.63694 -25.60477 -25.09825 -24.27313 -23.03441 -21.75903 -19.83469 -19.37103 -18.73802 -18.52323 -17.31874 -16.92327 -16.85040 -16.46176 -15.93663 -15.67791 -15.51722 -15.27288 -15.06135 -14.92774 -14.76950 -14.17297 -14.00652 -13.74645 -13.13234 -13.09472 -13.04643 -12.63704 -12.55655 -12.12962 -11.87730 -11.82722 -11.42734 -10.99120 -10.98576 -10.38242 -10.21105 -10.19166 -9.47845 -9.07991 -7.96704 -5.28791 -1.12882 -0.33893 0.63457 1.47829 1.52490 1.58462 1.61801 1.91264 2.14979 2.56998 3.01064 3.04708 3.20007 3.36867 3.41665 3.64988 3.72339 3.93955 3.97632 4.11276 4.18651 4.23739 4.30045 4.47941 4.54312 4.58834 4.64920 4.95217 4.98980 5.10058 5.10638 5.32550 5.35054 5.47932 5.61987 6.23457 6.37183 6.63768 6.93461 7.14954 7.29616 8.00251 8.25043 9.26941 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.037925 B = 0.002757 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.127372 B =10154.952950 C =10872.631210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.982 3.018 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.083 0.917 9 N -0.746 5.746 10 C 0.151 3.849 11 C 0.129 3.871 12 N -0.698 5.698 13 C 0.557 3.443 14 O -0.539 6.539 15 C 0.097 3.903 16 N -0.450 5.450 17 C 0.055 3.945 18 C -0.085 4.085 19 C -0.105 4.105 20 C -0.048 4.048 21 C -0.153 4.153 22 C 0.128 3.872 23 N -0.490 5.490 24 C 0.083 3.917 25 H 0.253 0.747 26 H 0.374 0.626 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.418 0.582 32 H 0.204 0.796 33 H 0.199 0.801 34 H 0.194 0.806 35 H 0.186 0.814 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.140 -33.715 0.027 34.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.382 4.382 8 H 0.101 0.899 9 N -0.390 5.390 10 C 0.024 3.976 11 C 0.005 3.995 12 N -0.351 5.351 13 C 0.341 3.659 14 O -0.414 6.414 15 C -0.054 4.054 16 N -0.163 5.163 17 C -0.093 4.093 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.074 4.074 21 C -0.174 4.174 22 C -0.045 4.045 23 N -0.199 5.199 24 C -0.041 4.041 25 H 0.062 0.938 26 H 0.206 0.794 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.255 0.745 32 H 0.220 0.780 33 H 0.216 0.784 34 H 0.211 0.789 35 H 0.204 0.796 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.571 -31.937 0.015 32.823 hybrid contribution -0.029 -0.039 0.002 0.048 sum 7.543 -31.976 0.017 32.854 Atomic orbital electron populations 1.69840 1.06878 1.26437 1.59013 1.25713 0.96481 1.01552 1.03206 0.85087 0.77092 0.78408 0.78387 1.20046 1.22145 1.20055 1.19630 0.91750 0.84829 1.42033 0.89936 1.42408 1.05755 1.00984 1.89814 1.20803 0.93487 0.84045 0.99231 1.21205 0.94828 0.82159 1.01331 1.45619 1.11403 1.04351 1.73758 1.18112 0.86771 0.83610 0.77358 1.90823 1.13996 1.87142 1.49486 1.21043 0.90025 0.91923 1.02422 1.67252 1.05599 1.34875 1.08544 1.23306 1.02015 0.86660 0.97285 1.22994 0.92518 1.01345 0.93681 1.19379 0.96101 0.94261 1.01545 1.22008 0.94866 0.97236 0.93257 1.22531 0.95720 1.00366 0.98773 1.23904 1.02430 0.87597 0.90564 1.68253 1.08204 1.31248 1.12172 1.19653 0.91146 0.93447 0.99845 0.93829 0.79397 0.94524 0.94549 0.92548 0.92529 0.74496 0.77965 0.78382 0.78889 0.79642 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.67 13.06 21.65 0.28 -61.38 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.25 -14.48 9.99 84.04 0.84 -13.64 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.75 -40.24 5.60 -343.46 -1.92 -42.17 16 10 C 0.15 6.40 6.37 86.37 0.55 6.95 16 11 C 0.13 5.11 5.79 86.37 0.50 5.61 16 12 N -0.70 -24.02 5.55 -465.94 -2.58 -26.61 16 13 C 0.56 20.72 7.81 86.80 0.68 21.40 16 14 O -0.54 -23.92 15.21 -3.85 -0.06 -23.97 16 15 C 0.10 2.94 6.81 42.46 0.29 3.23 16 16 N -0.45 -10.86 9.48 -184.13 -1.75 -12.60 16 17 C 0.05 0.79 11.12 84.56 0.94 1.73 16 18 C -0.09 -0.87 9.93 22.68 0.23 -0.64 16 19 C -0.11 -1.74 5.75 -21.27 -0.12 -1.86 16 20 C -0.05 -0.41 9.94 22.48 0.22 -0.19 16 21 C -0.15 -1.44 10.03 22.17 0.22 -1.21 16 22 C 0.13 2.37 11.14 85.06 0.95 3.32 16 23 N -0.49 -14.55 8.49 -187.92 -1.60 -16.15 16 24 C 0.08 2.29 6.61 40.62 0.27 2.56 16 25 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 26 H 0.37 21.66 7.67 -92.71 -0.71 20.94 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.42 12.38 7.82 -92.71 -0.72 11.65 16 32 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.20 -0.10 8.06 -2.91 -0.02 -0.12 16 34 H 0.19 -0.24 8.06 -2.91 -0.02 -0.26 16 35 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 36 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -85.30 319.56 0.13 -85.17 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.30 Total: 25.55 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 6.03 Total: 23.14 kcal Atomic # 7 Polarization: -151.34 SS G_CDS: -7.57 Total: -158.91 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.06 Total: -23.97 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -85.30 0.13 -85.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129718938.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.935 kcal (2) G-P(sol) polarization free energy of solvation -85.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.04 seconds