Wall clock time and date at job start Tue Mar 31 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00426 * 2 1 4 4 H 1.48502 * 109.47197 * 240.00316 * 3 2 1 5 5 H 1.48502 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47293 * 119.99920 * 3 2 1 7 7 C 1.37879 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99728 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00164 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40529 * 66.45429 * 9 7 2 11 11 O 1.42105 * 106.40216 * 293.53464 * 9 7 2 12 12 N 1.65600 * 107.22101 * 179.97438 * 9 7 2 13 13 C 1.46926 * 120.62994 * 89.99809 * 12 9 7 14 14 C 1.53192 * 108.77820 * 126.41425 * 13 12 9 15 15 C 1.53043 * 109.30860 * 54.63429 * 14 13 12 16 16 C 1.53037 * 109.53919 * 298.63563 * 15 14 13 17 17 H 1.09001 * 109.52544 * 301.40006 * 16 15 14 18 18 N 1.46504 * 109.49763 * 181.32066 * 16 15 14 19 19 C 1.35309 * 125.86563 * 325.15489 * 18 16 15 20 20 C 1.35349 * 106.17403 * 179.97438 * 19 18 16 21 21 N 1.33771 * 106.49488 * 0.02562 * 20 19 18 22 22 N 1.28632 * 108.88876 * 359.73362 * 21 20 19 23 23 C 1.46925 * 120.63092 * 270.02167 * 12 9 7 24 24 H 0.97002 * 119.99368 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.58406 * 246.20341 * 13 12 9 26 26 H 1.09002 * 109.59019 * 6.62330 * 13 12 9 27 27 H 1.09001 * 109.49595 * 174.58602 * 14 13 12 28 28 H 1.09000 * 109.49611 * 294.68450 * 14 13 12 29 29 H 1.08997 * 109.45405 * 178.61356 * 15 14 13 30 30 H 1.09002 * 109.44862 * 58.64978 * 15 14 13 31 31 H 1.07999 * 126.91443 * 0.03214 * 19 18 16 32 32 H 1.08003 * 126.75345 * 179.97438 * 20 19 18 33 33 H 1.08998 * 109.58340 * 353.37189 * 23 12 9 34 34 H 1.09005 * 109.58474 * 113.79476 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 0.0005 10 8 0.4516 -2.7955 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2481 -3.9355 0.0005 13 6 2.7565 -4.4849 1.2648 14 6 2.5736 -6.0058 1.2505 15 6 3.2407 -6.5840 0.0004 16 6 2.5739 -6.0055 -1.2497 17 1 1.5103 -6.2439 -1.2387 18 7 3.1922 -6.5835 -2.4455 19 6 4.4964 -6.9173 -2.5811 20 6 4.6308 -7.4118 -3.8339 21 7 3.4182 -7.3564 -4.3961 22 7 2.5870 -6.8658 -3.5459 23 6 2.7568 -4.4846 -1.2637 24 1 -0.4849 0.8401 0.0004 25 1 3.8148 -4.2451 1.3680 26 1 2.1999 -4.0578 2.0990 27 1 3.0334 -6.4359 2.1403 28 1 1.5100 -6.2442 1.2386 29 1 3.1333 -7.6687 0.0004 30 1 4.2993 -6.3239 0.0007 31 1 5.2736 -6.8115 -1.8388 32 1 5.5385 -7.7781 -4.2902 33 1 2.2004 -4.0573 -2.0978 34 1 3.8152 -4.2448 -1.3666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192973371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:46 Heat of formation + Delta-G solvation = 10.336410 kcal Electronic energy + Delta-G solvation = -21203.191220 eV Core-core repulsion = 17878.895612 eV Total energy + Delta-G solvation = -3324.295608 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.22482 -38.57990 -35.47854 -34.32278 -34.10220 -33.16602 -31.99853 -30.96704 -29.91689 -26.21753 -24.59245 -24.12778 -22.69293 -21.62764 -20.16701 -18.92996 -17.87710 -17.15939 -16.50077 -16.28201 -15.23459 -15.19673 -14.97821 -14.51485 -14.30339 -14.06867 -13.74742 -13.45677 -13.33620 -12.83413 -12.08344 -11.85054 -11.68467 -11.46607 -11.29881 -11.25468 -11.20249 -10.97636 -10.78145 -10.68049 -10.52401 -10.42859 -10.20254 -9.97417 -9.36764 -9.31547 -9.08392 -8.47532 -6.78223 -5.41978 1.63740 1.98523 2.41185 2.63176 3.03196 3.08191 3.13000 3.96770 4.18635 4.29862 4.52368 4.54924 4.58221 4.76468 4.96961 4.98078 5.12544 5.21714 5.35641 5.44624 5.57241 5.60520 5.68689 5.83350 5.86044 5.88045 5.98008 6.13939 6.17992 6.24047 6.50398 6.63422 7.23707 7.31838 7.86659 8.57894 8.80147 10.15748 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023601 B = 0.005279 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.083954 B = 5302.420726 C = 5744.804225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.710 3.290 10 O -0.998 6.998 11 O -0.998 6.998 12 N -1.007 6.007 13 C 0.116 3.884 14 C -0.128 4.128 15 C -0.122 4.122 16 C 0.127 3.873 17 H 0.119 0.881 18 N -0.278 5.278 19 C -0.050 4.050 20 C -0.058 4.058 21 N -0.278 5.278 22 N -0.080 5.080 23 C 0.120 3.880 24 H 0.293 0.707 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.187 0.813 32 H 0.187 0.813 33 H 0.106 0.894 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.038 -11.078 1.827 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.086 4.086 3 Si 0.746 3.254 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.812 3.188 10 O -0.988 6.988 11 O -0.988 6.988 12 N -0.841 5.841 13 C -0.010 4.010 14 C -0.168 4.168 15 C -0.161 4.161 16 C 0.023 3.977 17 H 0.137 0.863 18 N -0.072 5.072 19 C -0.201 4.201 20 C -0.215 4.215 21 N -0.144 5.144 22 N -0.060 5.060 23 C -0.008 4.008 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.204 0.796 32 H 0.204 0.796 33 H 0.124 0.876 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.533 -11.116 1.083 14.055 hybrid contribution 2.135 1.232 0.648 2.549 sum 10.668 -9.884 1.731 14.645 Atomic orbital electron populations 1.69881 1.06783 1.31023 1.39662 1.24762 0.94507 1.00864 0.88453 0.86175 0.79891 0.79575 0.79800 1.18839 1.20001 1.18808 1.30520 1.06047 1.11579 1.67273 0.87970 1.00734 0.72080 0.73038 0.72953 1.93375 1.72489 1.87373 1.45595 1.93360 1.72359 1.87439 1.45651 1.58337 1.62628 1.54345 1.08785 1.21378 1.00004 0.92774 0.86870 1.21905 1.01913 0.96465 0.96531 1.21874 1.00622 1.00592 0.93018 1.22288 0.99908 0.95353 0.80126 0.86295 1.47656 1.07124 1.39800 1.12614 1.23611 0.88350 1.06939 1.01231 1.23582 0.98231 1.06632 0.93055 1.75116 1.00236 1.15598 1.23434 1.78406 1.21730 1.15626 0.90190 1.21442 1.00942 0.89733 0.88666 0.89680 0.91803 0.88006 0.89813 0.90741 0.90722 0.90427 0.79554 0.79597 0.87568 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.33 13.19 55.43 0.73 -23.59 16 2 C 0.13 3.61 5.46 -17.82 -0.10 3.51 16 3 Si 0.92 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 7 C -1.02 -27.11 9.75 30.60 0.30 -26.82 16 8 H 0.10 2.47 7.81 -52.49 -0.41 2.06 16 9 S 2.71 68.52 5.01 -107.50 -0.54 67.98 16 10 O -1.00 -28.23 16.61 -57.17 -0.95 -29.18 16 11 O -1.00 -27.45 16.61 -57.17 -0.95 -28.40 16 12 N -1.01 -18.39 3.29 -113.52 -0.37 -18.76 16 13 C 0.12 1.65 6.47 -3.71 -0.02 1.62 16 14 C -0.13 -1.38 6.08 -26.61 -0.16 -1.54 16 15 C -0.12 -1.19 4.77 -26.69 -0.13 -1.32 16 16 C 0.13 1.69 3.28 -67.81 -0.22 1.47 16 17 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 18 N -0.28 -3.81 3.26 -54.65 -0.18 -3.99 16 19 C -0.05 -0.53 10.69 -17.05 -0.18 -0.72 16 20 C -0.06 -0.67 12.05 -17.74 -0.21 -0.88 16 21 N -0.28 -4.41 12.41 30.24 0.38 -4.04 16 22 N -0.08 -1.34 13.17 60.35 0.79 -0.55 16 23 C 0.12 1.93 6.08 -3.71 -0.02 1.91 16 24 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.10 1.60 6.92 -51.93 -0.36 1.24 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.61 7.24 -51.93 -0.38 0.24 16 31 H 0.19 1.24 7.34 -52.49 -0.39 0.85 16 32 H 0.19 1.44 8.06 -52.48 -0.42 1.01 16 33 H 0.11 1.99 6.91 -51.93 -0.36 1.63 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -35.68 300.47 -6.32 -42.00 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.98 Total: 1.70 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -0.75 Total: -22.77 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 1.35 Total: -50.93 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -1.90 Total: -57.58 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 68.52 SS G_CDS: -0.54 Total: 67.98 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.68 -6.32 -42.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.335 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds