Wall clock time and date at job start Tue Mar 31 2020 02:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38098 * 119.58224 * 2 1 4 4 C 1.38783 * 119.28795 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.75607 * 180.02562 * 4 3 2 6 6 C 1.38417 * 118.48892 * 0.02562 * 4 3 2 7 7 C 1.50694 * 120.44929 * 180.02562 * 6 4 3 8 8 N 1.46493 * 109.47108 * 269.95809 * 7 6 4 9 9 S 1.65603 * 120.00270 * 164.99724 * 8 7 6 10 10 O 1.42100 * 106.40518 * 178.53728 * 9 8 7 11 11 O 1.42102 * 106.39896 * 311.45985 * 9 8 7 12 12 C 1.76201 * 107.21929 * 64.99550 * 9 8 7 13 13 H 1.08000 * 119.99843 * 0.02562 * 12 9 8 14 14 C 1.37877 * 120.00076 * 180.02562 * 12 9 8 15 15 N 1.31511 * 119.99904 * 359.97438 * 14 12 9 16 16 Si 1.86793 * 119.99790 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47484 * 90.00154 * 16 14 12 18 18 H 1.48502 * 109.47161 * 209.99877 * 16 14 12 19 19 H 1.48504 * 109.47333 * 329.99831 * 16 14 12 20 20 C 1.38884 * 119.11286 * 359.97438 * 6 4 3 21 21 O 1.35676 * 119.68525 * 180.30080 * 20 6 4 22 22 N 1.31928 * 119.58755 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47108 * 270.01787 * 1 2 3 24 24 H 1.08997 * 109.47055 * 30.02610 * 1 2 3 25 25 H 1.08999 * 109.46632 * 150.02231 * 1 2 3 26 26 H 1.08001 * 120.35483 * 0.02691 * 3 2 1 27 27 H 1.09003 * 109.46855 * 90.00096 * 5 4 3 28 28 H 1.09002 * 109.47444 * 209.99951 * 5 4 3 29 29 H 1.09001 * 109.47313 * 330.00332 * 5 4 3 30 30 H 1.09003 * 109.46749 * 29.95664 * 7 6 4 31 31 H 1.08997 * 109.47434 * 149.95304 * 7 6 4 32 32 H 0.97002 * 119.99971 * 344.99604 * 8 7 6 33 33 H 0.97003 * 119.99735 * 180.02562 * 15 14 12 34 34 H 0.96705 * 113.99346 * 269.72633 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2010 0.0000 4 6 3.5766 1.1938 0.0005 5 6 4.3539 2.4849 0.0011 6 6 4.2305 -0.0261 0.0005 7 6 5.7363 -0.0854 0.0017 8 7 6.2253 -0.1050 -1.3791 9 16 7.8209 0.2036 -1.6970 10 8 7.9819 0.0768 -3.1031 11 8 8.1515 1.3853 -0.9802 12 6 8.7591 -1.0984 -0.9694 13 1 8.2573 -1.8943 -0.4391 14 6 10.1336 -1.1011 -1.0770 15 7 10.7445 -0.1322 -1.7231 16 14 11.1280 -2.4818 -0.3062 17 1 11.2970 -3.5799 -1.2915 18 1 12.4620 -1.9669 0.0947 19 1 10.4157 -2.9962 0.8910 20 6 3.4804 -1.1949 0.0005 21 8 4.1094 -2.3970 0.0067 22 7 2.1584 -1.1473 0.0005 23 1 -0.3633 0.0003 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3632 -0.8902 -0.5135 26 1 1.6477 2.1357 0.0004 27 1 4.5408 2.7959 1.0290 28 1 5.3040 2.3373 -0.5123 29 1 3.7790 3.2554 -0.5127 30 1 6.1339 0.7898 0.5156 31 1 6.0640 -0.9887 0.5161 32 1 5.6144 -0.2988 -2.1072 33 1 11.7115 -0.1343 -1.7991 34 1 4.2919 -2.7499 -0.8750 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988057.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:43 Heat of formation + Delta-G solvation = -141.349795 kcal Electronic energy + Delta-G solvation = -20712.752255 eV Core-core repulsion = 17349.586289 eV Total energy + Delta-G solvation = -3363.165966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.75895 -38.26482 -37.47789 -36.89774 -36.14432 -35.18477 -34.32205 -32.59312 -29.54524 -28.50745 -28.24962 -25.66332 -23.58749 -21.82129 -21.04798 -19.47276 -19.27497 -18.33254 -18.16923 -17.44896 -16.85734 -16.56396 -15.98587 -15.80325 -15.25848 -15.13668 -14.70894 -14.18071 -14.10661 -13.93774 -13.81790 -13.54545 -13.29547 -13.10977 -13.01177 -12.85606 -12.75204 -12.51929 -12.50938 -12.43295 -12.30490 -12.23271 -11.24518 -11.03597 -10.45022 -10.42388 -10.25979 -9.70421 -8.75449 -7.47819 -0.14075 0.13968 0.43745 1.34869 1.35400 1.51403 2.21147 2.43630 2.58573 2.73360 3.05466 3.46149 3.66075 3.70118 3.81748 3.91736 4.30067 4.39594 4.42235 4.52566 4.59342 4.71912 4.74270 4.82019 4.86318 4.99264 5.05664 5.14110 5.26206 5.30176 5.35744 5.64668 5.90751 6.28381 6.58309 6.79472 6.93779 8.20982 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.004884 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.522683 B = 5731.575294 C = 6311.917188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.145 3.855 3 C -0.180 4.180 4 C -0.011 4.011 5 C -0.130 4.130 6 C -0.182 4.182 7 C 0.174 3.826 8 N -1.113 6.113 9 S 2.724 3.276 10 O -1.043 7.043 11 O -1.037 7.037 12 C -1.041 5.041 13 H 0.120 0.880 14 C 0.072 3.928 15 N -0.893 5.893 16 Si 0.988 3.012 17 H -0.255 1.255 18 H -0.263 1.263 19 H -0.249 1.249 20 C 0.322 3.678 21 O -0.490 6.490 22 N -0.534 5.534 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.175 0.825 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.412 0.588 33 H 0.299 0.701 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 0.876 4.759 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.008 3.992 3 C -0.199 4.199 4 C -0.019 4.019 5 C -0.186 4.186 6 C -0.187 4.187 7 C 0.047 3.953 8 N -0.872 5.872 9 S 2.825 3.175 10 O -1.034 7.034 11 O -1.027 7.027 12 C -1.175 5.175 13 H 0.139 0.861 14 C -0.141 4.141 15 N -0.525 5.525 16 Si 0.806 3.194 17 H -0.179 1.179 18 H -0.187 1.187 19 H -0.172 1.172 20 C 0.143 3.857 21 O -0.299 6.299 22 N -0.255 5.255 23 H 0.110 0.890 24 H 0.122 0.878 25 H 0.092 0.908 26 H 0.192 0.808 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.245 0.755 33 H 0.109 0.891 34 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -17.718 1.033 4.947 18.424 hybrid contribution 1.244 -0.659 -0.350 1.451 sum -16.473 0.375 4.597 17.107 Atomic orbital electron populations 1.20852 0.85817 1.04738 1.04322 1.21711 0.98478 0.86866 0.92162 1.22179 0.93057 1.00665 1.04034 1.20463 0.94657 0.94839 0.91949 1.21027 0.99897 0.93359 1.04293 1.20743 0.95994 0.93700 1.08289 1.19855 0.89734 1.02990 0.82678 1.55405 1.27956 1.90421 1.13402 0.99793 0.70909 0.74682 0.72103 1.93318 1.85690 1.88829 1.35525 1.93304 1.83251 1.51050 1.75103 1.30924 1.04377 1.30063 1.52103 0.86144 1.25963 0.98484 0.98509 0.91156 1.69981 1.13369 1.32660 1.36449 0.85160 0.77300 0.77343 0.79591 1.17944 1.18700 1.17233 1.19045 0.86861 0.85201 0.94556 1.84689 1.76550 1.33159 1.35527 1.67087 1.09279 1.32134 1.16979 0.88990 0.87774 0.90762 0.80808 0.88738 0.92438 0.88118 0.90265 0.90555 0.75468 0.89105 0.72367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.28 10.17 71.24 0.72 -0.56 16 2 C 0.15 3.09 6.78 42.51 0.29 3.38 16 3 C -0.18 -3.48 9.44 22.37 0.21 -3.26 16 4 C -0.01 -0.27 5.91 -19.69 -0.12 -0.39 16 5 C -0.13 -2.96 9.28 71.24 0.66 -2.30 16 6 C -0.18 -5.35 5.31 -19.67 -0.10 -5.45 16 7 C 0.17 5.99 5.39 85.63 0.46 6.45 16 8 N -1.11 -42.78 5.99 -190.81 -1.14 -43.92 16 9 S 2.72 142.97 5.02 -56.49 -0.28 142.69 16 10 O -1.04 -61.44 18.02 -128.00 -2.31 -63.75 16 11 O -1.04 -59.93 17.49 -128.00 -2.24 -62.17 16 12 C -1.04 -56.53 9.72 67.73 0.66 -55.87 16 13 H 0.12 5.90 7.81 -2.91 -0.02 5.88 16 14 C 0.07 3.97 5.46 84.66 0.46 4.43 16 15 N -0.89 -52.87 13.19 21.45 0.28 -52.59 16 16 Si 0.99 41.18 29.54 68.60 2.03 43.21 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 20 C 0.32 9.46 7.72 84.78 0.65 10.11 16 21 O -0.49 -13.86 12.62 -89.93 -1.14 -14.99 16 22 N -0.53 -14.75 10.30 -296.96 -3.06 -17.81 16 23 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.70 6.82 -2.39 -0.02 1.68 16 29 H 0.10 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.08 2.83 6.41 -2.39 -0.02 2.81 16 31 H 0.08 2.64 7.55 -2.39 -0.02 2.62 16 32 H 0.41 13.81 8.64 -96.74 -0.84 12.98 16 33 H 0.30 15.89 8.31 -92.71 -0.77 15.11 16 34 H 0.42 8.56 9.06 -74.05 -0.67 7.89 16 Total: -1.00 -79.32 311.93 -4.30 -83.62 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -0.35 Total: 29.17 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 3.90 Total: -43.46 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -3.92 Total: -114.33 kcal Atomic # 8 Polarization: -135.22 SS G_CDS: -5.68 Total: -140.90 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 142.97 SS G_CDS: -0.28 Total: 142.69 kcal Total: -79.32 -4.30 -83.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988057.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.725 kcal (2) G-P(sol) polarization free energy of solvation -79.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds