Wall clock time and date at job start Tue Mar 31 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47034 * 2 1 4 4 C 1.34234 * 117.00028 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99749 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47374 * 59.99763 * 6 4 3 8 8 C 1.53006 * 109.47239 * 299.99625 * 6 4 3 9 9 N 1.46500 * 109.46896 * 179.97438 * 6 4 3 10 10 C 1.34770 * 119.99955 * 204.99514 * 9 6 4 11 11 S 1.71197 * 120.00194 * 0.02562 * 10 9 6 12 12 N 1.34784 * 120.00264 * 180.02562 * 10 9 6 13 13 C 1.47066 * 136.05008 * 359.62960 * 12 10 9 14 14 C 1.53760 * 87.88373 * 152.96554 * 13 12 10 15 15 C 1.50703 * 114.26560 * 139.78996 * 14 13 12 16 16 H 1.07999 * 120.00124 * 266.47021 * 15 14 13 17 17 C 1.37881 * 120.00126 * 86.47585 * 15 14 13 18 18 N 1.31516 * 119.99576 * 359.97438 * 17 15 14 19 19 Si 1.86789 * 120.00090 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47533 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47214 * 120.00216 * 19 17 15 22 22 H 1.48497 * 109.47448 * 240.00073 * 19 17 15 23 23 C 1.47060 * 136.06060 * 180.02562 * 12 10 9 24 24 H 1.09008 * 109.47078 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47430 * 300.00133 * 1 2 3 26 26 H 1.09002 * 109.47315 * 60.00297 * 1 2 3 27 27 H 1.09004 * 109.47695 * 239.99739 * 2 1 3 28 28 H 1.09002 * 109.47315 * 119.99703 * 2 1 3 29 29 H 1.09001 * 109.47002 * 60.00070 * 8 6 4 30 30 H 1.08993 * 109.46955 * 180.02562 * 8 6 4 31 31 H 1.09000 * 109.47050 * 300.00336 * 8 6 4 32 32 H 0.96997 * 120.00110 * 25.00292 * 9 6 4 33 33 H 1.09004 * 113.46737 * 267.69140 * 13 12 10 34 34 H 1.09000 * 113.47144 * 38.14033 * 13 12 10 35 35 H 1.09001 * 114.39524 * 272.67273 * 14 13 12 36 36 H 0.96998 * 119.99740 * 179.97438 * 18 17 15 37 37 H 1.08997 * 113.46881 * 321.86479 * 23 12 10 38 38 H 1.09002 * 113.46831 * 92.24741 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5842 3.4702 0.8895 8 6 3.4497 3.6837 -1.2500 9 7 5.3836 2.8608 0.0014 10 6 6.1114 3.8824 0.4944 11 16 5.3264 5.2693 1.1197 12 7 7.4574 3.8121 0.4952 13 6 8.4667 2.8302 0.0710 14 6 9.4383 4.0036 -0.1369 15 6 10.8502 3.7254 0.3106 16 1 11.1652 4.0006 1.3063 17 6 11.7399 3.1197 -0.5512 18 7 11.3561 2.7842 -1.7636 19 14 13.4901 2.7755 0.0032 20 1 13.6681 3.2450 1.4007 21 1 13.7530 1.3155 -0.0652 22 1 14.4406 3.4917 -0.8849 23 6 8.5629 4.6806 0.9270 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.3612 3.7407 -1.2506 30 1 3.8666 4.6907 -1.2506 31 1 3.7861 3.1510 -2.1395 32 1 5.8284 2.0750 -0.3527 33 1 8.7717 2.1499 0.8663 34 1 8.2067 2.3113 -0.8516 35 1 9.3819 4.4656 -1.1226 36 1 11.9820 2.3584 -2.3700 37 1 8.3847 5.7384 0.7338 38 1 8.8925 4.4885 1.9481 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199804120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:13 Heat of formation + Delta-G solvation = -38.588213 kcal Electronic energy + Delta-G solvation = -20270.967263 eV Core-core repulsion = 17048.090468 eV Total energy + Delta-G solvation = -3222.876795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97161 -39.57499 -37.64692 -36.46734 -33.25746 -32.38446 -31.52975 -29.05562 -25.97384 -25.50859 -25.04259 -23.22453 -22.22252 -21.20226 -19.75442 -18.13261 -17.65808 -17.11187 -16.90251 -16.75217 -16.03637 -15.08150 -14.84704 -14.62908 -14.41121 -13.76625 -13.65782 -13.36650 -13.12836 -12.60908 -12.40624 -12.31188 -12.23485 -11.97757 -11.83565 -11.78441 -11.17010 -11.07679 -10.89044 -10.87292 -10.69382 -10.62532 -10.46139 -9.54026 -9.38497 -8.78803 -8.55181 -7.33947 -7.14724 -6.34401 -4.41479 1.79444 1.86325 2.02432 2.40086 2.98052 3.14738 3.24534 3.27829 3.61004 4.21659 4.25023 4.57670 4.62269 4.83517 4.91602 4.93498 5.02461 5.27112 5.41331 5.42506 5.60507 5.63654 5.70168 5.81772 5.86844 6.04881 6.09987 6.16191 6.19361 6.28182 6.43691 6.70802 7.07957 7.33148 7.38980 7.62976 7.93208 7.99752 8.63992 9.27029 10.75192 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.003533 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.526887 B = 7923.188945 C = 8717.816516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.348 6.348 4 C 0.463 3.537 5 O -0.505 6.505 6 C 0.162 3.838 7 H 0.150 0.850 8 C -0.157 4.157 9 N -0.687 5.687 10 C 0.602 3.398 11 S -0.695 6.695 12 N -0.590 5.590 13 C 0.078 3.922 14 C 0.041 3.959 15 C -0.519 4.519 16 H 0.068 0.932 17 C 0.069 3.931 18 N -0.883 5.883 19 Si 0.899 3.101 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.116 3.884 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.406 0.594 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.266 0.734 37 H 0.079 0.921 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.534 -5.605 0.484 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.264 6.264 4 C 0.305 3.695 5 O -0.392 6.392 6 C 0.055 3.945 7 H 0.167 0.833 8 C -0.216 4.216 9 N -0.322 5.322 10 C 0.241 3.759 11 S -0.568 6.568 12 N -0.295 5.295 13 C -0.046 4.046 14 C 0.021 3.979 15 C -0.557 4.557 16 H 0.086 0.914 17 C -0.135 4.135 18 N -0.519 5.519 19 Si 0.727 3.273 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.005 4.005 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.245 0.755 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.970 -5.130 0.713 17.742 hybrid contribution 1.483 -1.784 -0.283 2.338 sum -15.486 -6.914 0.429 16.965 Atomic orbital electron populations 1.21811 0.92286 1.03074 1.03767 1.23105 0.95571 0.79808 1.02837 1.86490 1.23478 1.32726 1.83743 1.23746 0.81242 0.92305 0.72255 1.90692 1.60369 1.42910 1.45254 1.20613 0.78921 0.89572 1.05378 0.83268 1.22156 1.02630 1.02475 0.94350 1.44368 1.05610 1.19451 1.62812 1.21433 0.82858 0.89655 0.81906 1.93178 1.71617 1.24354 1.67617 1.49405 1.00443 1.24657 1.54982 1.24267 0.85087 0.96242 0.99032 1.20408 0.92515 0.89870 0.95075 1.20881 0.93926 1.40737 1.00177 0.91359 1.25055 0.99124 0.94747 0.94583 1.69950 1.35931 1.39967 1.06100 0.86409 0.83773 0.78056 0.79102 1.19385 1.20840 1.20697 1.23737 0.79807 0.95851 1.01131 0.90131 0.91265 0.91295 0.91035 0.91038 0.89867 0.88800 0.92280 0.75534 0.89359 0.91561 0.90758 0.92452 0.90294 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.16 0.38 -0.49 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.35 -3.78 10.12 -39.27 -0.40 -4.18 16 4 C 0.46 5.95 7.32 36.00 0.26 6.21 16 5 O -0.50 -7.68 15.59 -18.75 -0.29 -7.97 16 6 C 0.16 2.15 2.85 -69.08 -0.20 1.96 16 7 H 0.15 2.10 6.81 -51.93 -0.35 1.75 16 8 C -0.16 -1.82 9.37 37.16 0.35 -1.47 16 9 N -0.69 -10.71 4.96 -56.65 -0.28 -10.99 16 10 C 0.60 11.11 8.08 -86.92 -0.70 10.41 16 11 S -0.70 -14.31 27.93 -107.50 -3.00 -17.31 16 12 N -0.59 -11.19 3.69 -187.09 -0.69 -11.88 16 13 C 0.08 1.53 7.87 -8.37 -0.07 1.47 16 14 C 0.04 0.89 3.79 -91.11 -0.35 0.55 16 15 C -0.52 -12.47 8.83 -34.44 -0.30 -12.78 16 16 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.88 -23.08 13.26 55.43 0.74 -22.34 16 19 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 23 C 0.12 2.25 7.91 -8.50 -0.07 2.18 16 24 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 29 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.09 1.27 7.48 -51.93 -0.39 0.88 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.41 6.26 7.51 -40.82 -0.31 5.96 16 33 H 0.09 1.71 8.10 -51.93 -0.42 1.28 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.79 8.11 -51.93 -0.42 1.36 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -28.75 339.83 -10.04 -38.79 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.66 Total: 6.00 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -0.56 Total: 10.41 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.24 Total: -45.21 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.69 Total: -12.15 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: -14.31 SS G_CDS: -3.00 Total: -17.31 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.75 -10.04 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199804120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.205 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds