Wall clock time and date at job start Tue Mar 31 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46509 * 119.99814 * 2 1 4 4 C 1.50694 * 109.47379 * 275.55270 * 3 2 1 5 5 H 1.08011 * 119.99680 * 4.95526 * 4 3 2 6 6 C 1.37869 * 120.00117 * 184.96153 * 4 3 2 7 7 N 1.31522 * 120.00147 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00340 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46938 * 89.99831 * 8 6 4 10 10 H 1.48487 * 109.47841 * 210.00392 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.01087 * 8 6 4 12 12 S 1.65595 * 120.00200 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40475 * 159.52308 * 12 2 1 14 14 O 1.42107 * 106.40260 * 26.60255 * 12 2 1 15 15 N 1.65600 * 107.22036 * 273.06635 * 12 2 1 16 16 C 1.46496 * 120.00287 * 62.72721 * 15 12 2 17 17 C 1.50696 * 109.47277 * 164.42172 * 16 15 12 18 18 C 1.38627 * 120.44519 * 95.00729 * 17 16 15 19 19 C 1.38572 * 118.40067 * 179.70211 * 18 17 16 20 20 N 1.32348 * 119.10173 * 0.27243 * 19 18 17 21 21 C 1.31776 * 120.82479 * 359.97438 * 20 19 18 22 22 N 1.31811 * 121.75268 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.47305 * 269.99995 * 1 2 3 24 24 H 1.09008 * 109.46973 * 29.99773 * 1 2 3 25 25 H 1.08997 * 109.47267 * 149.99286 * 1 2 3 26 26 H 1.08996 * 109.47007 * 35.55612 * 3 2 1 27 27 H 1.09000 * 109.46430 * 155.54998 * 3 2 1 28 28 H 0.97001 * 120.00100 * 179.97438 * 7 6 4 29 29 H 0.97005 * 120.00170 * 242.73465 * 15 12 2 30 30 H 1.09007 * 109.46996 * 44.42423 * 16 15 12 31 31 H 1.08998 * 109.47714 * 284.43213 * 16 15 12 32 32 H 1.07996 * 120.79701 * 359.96915 * 18 17 16 33 33 H 1.07996 * 120.44706 * 180.29237 * 19 18 17 34 34 H 1.07998 * 119.12571 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3296 1.7726 -1.4141 5 1 1.8420 1.2475 -2.2222 6 6 3.0730 2.9038 -1.6763 7 7 3.1887 3.3432 -2.9105 8 14 3.9159 3.8123 -0.2786 9 1 5.2812 3.2620 -0.0828 10 1 4.0072 5.2566 -0.6109 11 1 3.1293 3.6401 0.9692 12 16 2.2930 -1.4341 0.0006 13 8 3.5996 -1.1433 -0.4764 14 8 1.4381 -2.3913 -0.6094 15 7 2.4649 -1.9002 1.5804 16 6 1.2801 -2.1932 2.3907 17 6 1.6924 -2.9457 3.6296 18 6 1.9262 -2.2695 4.8169 19 6 2.2973 -3.0042 5.9318 20 7 2.4206 -4.3176 5.8253 21 6 2.1949 -4.9262 4.6785 22 7 1.8405 -4.2601 3.5976 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6551 2.0015 0.5976 27 1 3.1893 1.1156 0.4254 28 1 3.7114 4.1392 -3.0949 29 1 3.3501 -1.9792 1.9692 30 1 0.5847 -2.8005 1.8113 31 1 0.7957 -1.2596 2.6769 32 1 1.8176 -1.1965 4.8729 33 1 2.4830 -2.5117 6.8748 34 1 2.3033 -5.9993 4.6226 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212046201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:11 Heat of formation + Delta-G solvation = -47.139501 kcal Electronic energy + Delta-G solvation = -20526.199353 eV Core-core repulsion = 17199.411403 eV Total energy + Delta-G solvation = -3326.787950 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.99280 -38.36180 -37.31401 -36.92499 -36.89218 -34.49424 -34.31717 -32.90666 -30.24970 -27.98234 -26.75646 -25.35318 -23.85002 -23.70258 -20.54232 -19.19166 -18.85432 -18.64157 -18.47981 -17.85579 -17.17107 -16.49052 -16.35266 -16.01230 -15.65451 -15.31614 -14.96453 -14.58698 -14.49226 -14.37658 -14.06801 -13.93217 -13.42007 -13.18811 -13.08846 -13.03523 -12.98150 -12.33251 -12.22910 -11.99832 -11.85623 -11.76164 -11.68339 -10.76628 -10.67415 -10.64415 -10.26288 -9.76678 -8.27263 -6.33492 -0.52498 -0.05717 0.08199 1.38814 1.43930 1.51735 2.01764 2.37968 2.56802 2.83599 2.93375 3.07729 3.27085 3.38761 3.53609 3.88993 4.03928 4.17814 4.33622 4.42520 4.62915 4.68164 4.71325 4.76320 4.80852 4.93297 5.12256 5.35396 5.41336 5.50556 5.71270 5.97409 6.01591 6.32161 6.70525 7.08555 7.30139 8.90353 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.004600 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.823593 B = 6085.178419 C = 6633.173400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.995 5.995 3 C 0.234 3.766 4 C -0.548 4.548 5 H 0.028 0.972 6 C 0.005 3.995 7 N -0.951 5.951 8 Si 0.945 3.055 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.221 1.221 12 S 2.801 3.199 13 O -1.009 7.009 14 O -1.009 7.009 15 N -1.112 6.112 16 C 0.163 3.837 17 C 0.150 3.850 18 C -0.200 4.200 19 C 0.146 3.854 20 N -0.536 5.536 21 C 0.283 3.717 22 N -0.535 5.535 23 H 0.092 0.908 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.267 0.733 29 H 0.421 0.579 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.183 0.817 33 H 0.205 0.795 34 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -9.596 22.319 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.837 5.837 3 C 0.110 3.890 4 C -0.587 4.587 5 H 0.046 0.954 6 C -0.193 4.193 7 N -0.591 5.591 8 Si 0.766 3.234 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.143 1.143 12 S 2.809 3.191 13 O -0.993 6.993 14 O -0.992 6.992 15 N -0.875 5.875 16 C 0.037 3.963 17 C 0.002 3.998 18 C -0.222 4.222 19 C -0.020 4.020 20 N -0.251 5.251 21 C -0.004 4.004 22 N -0.250 5.250 23 H 0.110 0.890 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.256 0.744 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.201 0.799 33 H 0.221 0.779 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.843 -10.912 21.295 24.413 hybrid contribution 0.733 1.361 -0.043 1.547 sum -4.111 -9.551 21.252 23.659 Atomic orbital electron populations 1.21719 0.77552 1.03639 1.03391 1.57271 1.15945 1.21187 1.89279 1.19249 0.92185 0.82305 0.95297 1.21777 1.31759 1.10958 0.94192 0.95409 1.25984 0.96506 0.98136 0.98657 1.70084 1.42196 1.24970 1.21827 0.85770 0.79668 0.77420 0.80495 1.19823 1.20684 1.14349 1.01154 0.72055 0.72613 0.73294 1.93582 1.41228 1.85217 1.79234 1.93518 1.69106 1.61257 1.75306 1.55734 1.14881 1.85098 1.31767 1.20402 0.86933 1.00232 0.88777 1.21703 0.92624 0.90043 0.95400 1.23195 1.00800 1.04785 0.93416 1.23921 0.88978 0.89052 1.00036 1.68490 1.15857 1.12575 1.28132 1.25435 0.90097 1.02159 0.82738 1.68275 1.14115 1.09812 1.32845 0.88990 0.91195 0.91231 0.91911 0.94511 0.92416 0.74404 0.89086 0.86043 0.79925 0.77882 0.76851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 10.69 127.77 1.37 3.71 16 2 N -1.00 -36.38 3.23 -543.22 -1.75 -38.14 16 3 C 0.23 10.12 4.16 85.63 0.36 10.47 16 4 C -0.55 -31.16 9.93 25.60 0.25 -30.90 16 5 H 0.03 1.79 8.06 -2.90 -0.02 1.77 16 6 C 0.00 0.27 5.47 84.65 0.46 0.74 16 7 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 8 Si 0.94 41.65 27.37 68.60 1.88 43.53 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.22 -8.13 6.69 99.48 0.67 -7.47 16 12 S 2.80 103.39 6.09 -56.49 -0.34 103.05 16 13 O -1.01 -47.07 16.99 -128.00 -2.18 -49.25 16 14 O -1.01 -40.98 16.34 -128.00 -2.09 -43.07 16 15 N -1.11 -27.82 6.04 -190.80 -1.15 -28.97 16 16 C 0.16 3.08 6.61 85.63 0.57 3.65 16 17 C 0.15 2.72 6.22 42.58 0.26 2.99 16 18 C -0.20 -2.41 9.84 22.44 0.22 -2.19 16 19 C 0.15 1.74 11.30 84.69 0.96 2.70 16 20 N -0.54 -9.12 10.44 -200.06 -2.09 -11.21 16 21 C 0.28 5.10 12.29 180.88 2.22 7.32 16 22 N -0.54 -11.57 10.38 -188.07 -1.95 -13.53 16 23 H 0.09 1.68 8.06 -2.39 -0.02 1.66 16 24 H 0.07 2.17 8.07 -2.38 -0.02 2.15 16 25 H 0.07 1.99 7.05 -2.39 -0.02 1.97 16 26 H 0.06 2.37 7.51 -2.39 -0.02 2.35 16 27 H 0.04 1.57 6.66 -2.39 -0.02 1.55 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.42 9.48 8.65 -96.74 -0.84 8.64 16 30 H 0.09 1.91 7.79 -2.38 -0.02 1.89 16 31 H 0.12 1.45 7.98 -2.39 -0.02 1.43 16 32 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.22 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -83.70 310.56 -2.46 -86.16 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.25 Total: 12.52 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 6.67 Total: -1.52 kcal Atomic # 7 Polarization: -144.78 SS G_CDS: -6.65 Total: -151.43 kcal Atomic # 8 Polarization: -88.05 SS G_CDS: -4.27 Total: -92.32 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.53 kcal Atomic # 16 Polarization: 103.39 SS G_CDS: -0.34 Total: 103.05 kcal Total: -83.70 -2.46 -86.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212046201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.020 kcal (2) G-P(sol) polarization free energy of solvation -83.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds