Wall clock time and date at job start Tue Mar 31 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 107.16799 * 2 1 4 4 O 1.42099 * 113.53999 * 126.19644 * 2 1 3 5 5 N 1.49351 * 107.52328 * 244.65696 * 2 1 3 6 6 C 1.32921 * 120.00075 * 295.10915 * 5 2 1 7 7 C 1.46909 * 127.07130 * 0.02562 * 6 5 2 8 8 N 1.30221 * 107.22152 * 180.02562 * 7 6 5 9 9 N 1.39661 * 109.89134 * 0.02562 * 8 7 6 10 10 C 1.46494 * 125.08461 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47059 * 304.97899 * 10 9 8 12 12 O 1.21295 * 120.00060 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99809 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99741 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00217 * 0.02562 * 14 13 11 16 16 C 1.38952 * 120.00218 * 179.97438 * 14 13 11 17 17 N 1.31413 * 119.99469 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00328 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47379 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47372 * 119.99992 * 18 16 14 21 21 H 1.48500 * 109.47061 * 240.00089 * 18 16 14 22 22 C 1.34290 * 109.83042 * 359.71770 * 9 8 7 23 23 H 1.09002 * 109.47124 * 53.80272 * 1 2 3 24 24 H 1.09001 * 109.46975 * 293.80393 * 1 2 3 25 25 H 1.09004 * 109.47147 * 173.80357 * 1 2 3 26 26 H 1.08997 * 109.47156 * 64.65375 * 3 2 1 27 27 H 1.09001 * 109.47241 * 184.66188 * 3 2 1 28 28 H 1.09004 * 109.46761 * 304.66093 * 3 2 1 29 29 H 1.08004 * 126.39117 * 359.97438 * 7 6 5 30 30 H 1.09000 * 109.46971 * 64.97616 * 10 9 8 31 31 H 1.09000 * 109.47319 * 184.97825 * 10 9 8 32 32 H 0.96996 * 119.99912 * 0.02562 * 13 11 10 33 33 H 0.97003 * 119.99698 * 179.97438 * 17 16 14 34 34 H 1.07999 * 126.40208 * 180.29367 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7332 0.0000 4 8 2.3816 -0.7693 1.0513 5 7 2.2637 -0.6096 -1.2871 6 6 1.9980 -1.8859 -1.5467 7 6 1.2778 -2.8334 -0.6855 8 7 1.2383 -3.9729 -1.3145 9 7 1.8863 -3.8583 -2.5464 10 6 2.0366 -4.9402 -3.5226 11 6 2.6897 -6.1264 -2.8611 12 8 2.9987 -6.0734 -1.6894 13 7 2.9295 -7.2466 -3.5713 14 6 3.5231 -8.3259 -2.9694 15 1 3.7983 -8.2787 -1.9261 16 6 3.7699 -9.4809 -3.7014 17 7 3.4347 -9.5385 -4.9707 18 14 4.5781 -10.9517 -2.8811 19 1 4.8555 -10.6340 -1.4573 20 1 3.6692 -12.1234 -2.9593 21 1 5.8527 -11.2668 -3.5748 22 6 2.3449 -2.6062 -2.7052 23 1 -0.3633 0.6069 -0.8293 24 1 -0.3633 0.4148 0.9403 25 1 -0.3634 -1.0217 -0.1109 26 1 2.0364 2.2102 0.9287 27 1 3.4354 1.7780 -0.0835 28 1 1.8983 2.2528 -0.8453 29 1 0.8597 -2.6242 0.2881 30 1 1.0553 -5.2289 -3.8990 31 1 2.6575 -4.5987 -4.3508 32 1 2.6821 -7.2891 -4.5082 33 1 3.6073 -10.3447 -5.4818 34 1 2.8816 -2.2239 -3.5609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307375581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:34 Heat of formation + Delta-G solvation = 65.534618 kcal Electronic energy + Delta-G solvation = -19942.645290 eV Core-core repulsion = 16620.743256 eV Total energy + Delta-G solvation = -3321.902034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.30435 -38.00438 -36.48831 -34.96812 -33.91374 -32.13173 -31.16875 -30.24038 -29.29349 -28.63733 -26.31361 -24.36726 -21.36136 -20.64799 -19.37453 -18.33320 -17.85561 -16.99158 -16.18338 -15.92562 -15.77833 -15.42371 -14.62511 -14.35445 -13.93713 -13.83369 -13.74192 -13.55131 -13.43750 -13.29472 -13.08108 -12.69842 -12.31481 -12.03762 -11.69427 -11.53245 -11.25406 -11.05756 -10.75528 -10.47935 -10.32233 -10.22080 -9.51947 -9.16400 -9.14365 -8.30169 -7.97230 -6.61901 -6.41337 -3.82221 -0.64734 2.24847 2.60443 2.89337 3.13054 3.17803 3.28974 3.34353 3.37526 3.84491 3.87135 4.18731 4.27619 4.45953 4.69752 4.81371 4.83523 5.02610 5.10456 5.17517 5.34406 5.49067 5.62870 5.70294 5.89298 6.17938 6.28215 6.60877 7.43226 7.56687 7.70308 8.04437 8.30148 8.59703 9.17814 9.50296 10.01917 10.75895 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.045945 B = 0.003126 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.280921 B = 8954.733946 C = 9172.175893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.252 3.748 3 C -0.533 4.533 4 O -0.928 6.928 5 N -1.020 6.020 6 C 0.033 3.967 7 C -0.041 4.041 8 N -0.232 5.232 9 N -0.335 5.335 10 C 0.122 3.878 11 C 0.427 3.573 12 O -0.564 6.564 13 N -0.560 5.560 14 C -0.297 4.297 15 H 0.104 0.896 16 C 0.023 3.977 17 N -0.901 5.901 18 Si 0.930 3.070 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.033 3.967 23 H 0.121 0.879 24 H 0.107 0.893 25 H 0.125 0.875 26 H 0.130 0.870 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.177 0.823 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.393 0.607 33 H 0.271 0.729 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 23.970 3.447 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.826 4.826 2 S 2.444 3.556 3 C -0.691 4.691 4 O -0.913 6.913 5 N -0.908 5.908 6 C -0.084 4.084 7 C -0.236 4.236 8 N -0.053 5.053 9 N -0.119 5.119 10 C -0.004 4.004 11 C 0.211 3.789 12 O -0.446 6.446 13 N -0.198 5.198 14 C -0.426 4.426 15 H 0.122 0.878 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.757 3.243 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.120 4.120 23 H 0.140 0.860 24 H 0.126 0.874 25 H 0.143 0.857 26 H 0.149 0.851 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.193 0.807 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.226 0.774 33 H 0.081 0.919 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.956 22.490 4.359 23.670 hybrid contribution -0.162 0.006 -0.071 0.177 sum -6.118 22.496 4.288 23.704 Atomic orbital electron populations 1.30638 1.31295 1.11295 1.09326 1.16114 0.80889 0.81256 0.77365 1.28788 1.13371 1.15411 1.11545 1.93603 1.73751 1.62278 1.61707 1.69489 1.50129 1.22455 1.48745 1.18304 1.08293 0.86991 0.94844 1.25812 1.05865 0.91793 1.00096 1.76717 1.15108 1.20634 0.92801 1.47224 1.42620 1.07914 1.14177 1.21476 1.02969 0.86946 0.89021 1.19825 0.86146 0.84691 0.88258 1.90625 1.55676 1.82333 1.15988 1.41789 1.53766 1.11701 1.12522 1.19758 1.34926 0.90597 0.97320 0.87838 1.25259 0.97882 0.99195 0.95545 1.69617 1.47788 1.29578 1.07279 0.85781 0.78532 0.80473 0.79477 1.19193 1.20708 1.20729 1.22663 1.05458 0.85113 0.98742 0.86007 0.87387 0.85688 0.85123 0.84146 0.84164 0.80666 0.88191 0.87061 0.77360 0.91881 0.80500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -4.38 10.47 101.05 1.06 -3.32 16 2 S 2.25 19.75 4.41 -107.50 -0.47 19.27 16 3 C -0.53 -1.50 10.89 101.05 1.10 -0.40 16 4 O -0.93 -13.42 16.82 -35.23 -0.59 -14.01 16 5 N -1.02 -13.50 10.29 33.05 0.34 -13.16 16 6 C 0.03 0.57 6.73 -82.93 -0.56 0.01 16 7 C -0.04 -0.77 9.82 -14.73 -0.14 -0.92 16 8 N -0.23 -5.05 11.40 32.10 0.37 -4.69 16 9 N -0.34 -6.61 3.36 -61.21 -0.21 -6.82 16 10 C 0.12 2.23 6.93 -5.20 -0.04 2.19 16 11 C 0.43 10.52 7.80 -10.98 -0.09 10.43 16 12 O -0.56 -16.57 15.24 5.54 0.08 -16.49 16 13 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 14 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 15 H 0.10 3.14 7.16 -52.48 -0.38 2.77 16 16 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 17 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 18 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.03 0.57 11.61 -15.52 -0.18 0.39 16 23 H 0.12 0.54 8.14 -51.92 -0.42 0.12 16 24 H 0.11 0.44 8.14 -51.92 -0.42 0.01 16 25 H 0.12 1.09 6.19 -51.92 -0.32 0.77 16 26 H 0.13 0.01 8.14 -51.93 -0.42 -0.42 16 27 H 0.14 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.14 0.07 8.14 -51.92 -0.42 -0.36 16 29 H 0.18 2.79 6.56 -52.48 -0.34 2.45 16 30 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.11 1.60 8.05 -51.93 -0.42 1.18 16 32 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.18 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 311.23 15.07 4.69 4.69 Total: -1.00 -41.99 311.23 -3.11 -45.10 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -3.88 Total: 7.57 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 0.91 Total: 0.34 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: 1.17 Total: -62.92 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.51 Total: -30.50 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 19.75 SS G_CDS: -0.47 Total: 19.27 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -41.99 -3.11 -45.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307375581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.631 kcal (2) G-P(sol) polarization free energy of solvation -41.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds