Wall clock time and date at job start Tue Mar 31 2020 02:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 107.16799 * 2 1 4 4 O 1.42099 * 113.53999 * 126.19644 * 2 1 3 5 5 N 1.49351 * 107.52328 * 244.65696 * 2 1 3 6 6 C 1.32921 * 120.00075 * 295.10915 * 5 2 1 7 7 C 1.46909 * 127.07130 * 0.02562 * 6 5 2 8 8 N 1.30221 * 107.22152 * 180.02562 * 7 6 5 9 9 N 1.39661 * 109.89134 * 0.02562 * 8 7 6 10 10 C 1.46494 * 125.08461 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47059 * 304.97899 * 10 9 8 12 12 O 1.21295 * 120.00060 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99809 * 179.97438 * 11 10 9 14 14 C 1.37096 * 119.99741 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00217 * 0.02562 * 14 13 11 16 16 C 1.38952 * 120.00218 * 179.97438 * 14 13 11 17 17 N 1.31413 * 119.99469 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00328 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47379 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47372 * 119.99992 * 18 16 14 21 21 H 1.48500 * 109.47061 * 240.00089 * 18 16 14 22 22 C 1.34290 * 109.83042 * 359.71770 * 9 8 7 23 23 H 1.09002 * 109.47124 * 53.80272 * 1 2 3 24 24 H 1.09001 * 109.46975 * 293.80393 * 1 2 3 25 25 H 1.09004 * 109.47147 * 173.80357 * 1 2 3 26 26 H 1.08997 * 109.47156 * 64.65375 * 3 2 1 27 27 H 1.09001 * 109.47241 * 184.66188 * 3 2 1 28 28 H 1.09004 * 109.46761 * 304.66093 * 3 2 1 29 29 H 1.08004 * 126.39117 * 359.97438 * 7 6 5 30 30 H 1.09000 * 109.46971 * 64.97616 * 10 9 8 31 31 H 1.09000 * 109.47319 * 184.97825 * 10 9 8 32 32 H 0.96996 * 119.99912 * 0.02562 * 13 11 10 33 33 H 0.97003 * 119.99698 * 179.97438 * 17 16 14 34 34 H 1.07999 * 126.40208 * 180.29367 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3495 1.7332 0.0000 4 8 2.3816 -0.7693 1.0513 5 7 2.2637 -0.6096 -1.2871 6 6 1.9980 -1.8859 -1.5467 7 6 1.2778 -2.8334 -0.6855 8 7 1.2383 -3.9729 -1.3145 9 7 1.8863 -3.8583 -2.5464 10 6 2.0366 -4.9402 -3.5226 11 6 2.6897 -6.1264 -2.8611 12 8 2.9987 -6.0734 -1.6894 13 7 2.9295 -7.2466 -3.5713 14 6 3.5231 -8.3259 -2.9694 15 1 3.7983 -8.2787 -1.9261 16 6 3.7699 -9.4809 -3.7014 17 7 3.4347 -9.5385 -4.9707 18 14 4.5781 -10.9517 -2.8811 19 1 4.8555 -10.6340 -1.4573 20 1 3.6692 -12.1234 -2.9593 21 1 5.8527 -11.2668 -3.5748 22 6 2.3449 -2.6062 -2.7052 23 1 -0.3633 0.6069 -0.8293 24 1 -0.3633 0.4148 0.9403 25 1 -0.3634 -1.0217 -0.1109 26 1 2.0364 2.2102 0.9287 27 1 3.4354 1.7780 -0.0835 28 1 1.8983 2.2528 -0.8453 29 1 0.8597 -2.6242 0.2881 30 1 1.0553 -5.2289 -3.8990 31 1 2.6575 -4.5987 -4.3508 32 1 2.6821 -7.2891 -4.5082 33 1 3.6073 -10.3447 -5.4818 34 1 2.8816 -2.2239 -3.5609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307375581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:33 Heat of formation + Delta-G solvation = 28.543713 kcal Electronic energy + Delta-G solvation = -19944.249336 eV Core-core repulsion = 16620.743256 eV Total energy + Delta-G solvation = -3323.506080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.61654 -39.93121 -37.37548 -36.20003 -35.81133 -33.65775 -33.12281 -30.70848 -30.06909 -29.81057 -27.83768 -26.19801 -22.68442 -21.96170 -21.05548 -20.05189 -19.19690 -18.06398 -17.94641 -16.77160 -16.71600 -16.65413 -16.45935 -15.87635 -15.65722 -15.24535 -14.94798 -14.22279 -14.10917 -14.01666 -13.94035 -13.85043 -13.66284 -13.54624 -13.25512 -12.92597 -12.79272 -12.45856 -12.15167 -12.08125 -11.91642 -11.58062 -11.50737 -10.75179 -10.21580 -10.07461 -10.04412 -8.50952 -7.77799 -5.99480 -1.24554 1.11331 1.33432 1.39478 1.53658 1.57878 1.75101 1.95557 2.06062 2.28511 2.46715 3.06424 3.15932 3.24472 3.78822 3.91496 4.11098 4.13234 4.17397 4.22345 4.30898 4.31561 4.36871 4.71255 4.91173 5.04435 5.06564 5.35871 5.37698 5.90752 6.21379 6.55518 6.61124 6.98123 7.08192 7.47256 8.04902 8.66570 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.045945 B = 0.003126 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.280921 B = 8954.733946 C = 9172.175893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.247 3.753 3 C -0.489 4.489 4 O -1.006 7.006 5 N -1.073 6.073 6 C 0.050 3.950 7 C -0.064 4.064 8 N -0.292 5.292 9 N -0.350 5.350 10 C 0.133 3.867 11 C 0.423 3.577 12 O -0.619 6.619 13 N -0.564 5.564 14 C -0.335 4.335 15 H 0.071 0.929 16 C -0.008 4.008 17 N -0.914 5.914 18 Si 0.992 3.008 19 H -0.279 1.279 20 H -0.268 1.268 21 H -0.266 1.266 22 C -0.007 4.007 23 H 0.157 0.843 24 H 0.147 0.853 25 H 0.104 0.896 26 H 0.175 0.825 27 H 0.148 0.852 28 H 0.180 0.820 29 H 0.185 0.815 30 H 0.124 0.876 31 H 0.154 0.846 32 H 0.401 0.599 33 H 0.280 0.720 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 27.593 3.160 28.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.446 3.554 3 C -0.650 4.650 4 O -0.992 6.992 5 N -0.960 5.960 6 C -0.066 4.066 7 C -0.257 4.257 8 N -0.114 5.114 9 N -0.137 5.137 10 C 0.008 3.992 11 C 0.209 3.791 12 O -0.505 6.505 13 N -0.202 5.202 14 C -0.465 4.465 15 H 0.090 0.910 16 C -0.208 4.208 17 N -0.555 5.555 18 Si 0.816 3.184 19 H -0.204 1.204 20 H -0.193 1.193 21 H -0.191 1.191 22 C -0.157 4.157 23 H 0.175 0.825 24 H 0.165 0.835 25 H 0.122 0.878 26 H 0.193 0.807 27 H 0.166 0.834 28 H 0.197 0.803 29 H 0.202 0.798 30 H 0.142 0.858 31 H 0.172 0.828 32 H 0.236 0.764 33 H 0.089 0.911 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.748 26.091 4.014 27.247 hybrid contribution -0.069 -0.649 0.219 0.688 sum -6.817 25.442 4.232 26.677 Atomic orbital electron populations 1.30250 1.24791 1.11430 1.13163 1.14578 0.81738 0.84747 0.74291 1.28758 1.14006 1.06479 1.15752 1.93545 1.75211 1.67554 1.62872 1.69200 1.58599 1.20874 1.47355 1.18530 1.05433 0.88660 0.94005 1.26101 1.06520 0.92225 1.00811 1.76550 1.17579 1.22656 0.94580 1.47187 1.43993 1.08654 1.13820 1.21500 1.04192 0.84393 0.89142 1.20935 0.84740 0.85754 0.87696 1.90583 1.57663 1.83569 1.18637 1.41796 1.53843 1.11673 1.12852 1.19626 1.37537 0.92705 0.96588 0.91046 1.26000 0.97693 1.01000 0.96121 1.69658 1.47440 1.30574 1.07827 0.84888 0.78290 0.77350 0.77875 1.20434 1.19253 1.19134 1.23136 1.07219 0.84321 1.01064 0.82484 0.83477 0.87756 0.80665 0.83411 0.80257 0.79788 0.85822 0.82830 0.76397 0.91053 0.77818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.68 10.47 113.37 1.19 -4.49 16 2 S 2.25 34.26 4.41 -56.49 -0.25 34.01 16 3 C -0.49 0.32 10.89 113.37 1.23 1.55 16 4 O -1.01 -29.50 16.82 -148.98 -2.51 -32.00 16 5 N -1.07 -27.78 10.29 -49.35 -0.51 -28.29 16 6 C 0.05 1.78 6.73 41.87 0.28 2.06 16 7 C -0.06 -2.54 9.82 87.20 0.86 -1.68 16 8 N -0.29 -13.62 11.40 -52.37 -0.60 -14.22 16 9 N -0.35 -14.51 3.36 -347.58 -1.17 -15.68 16 10 C 0.13 5.00 6.93 85.64 0.59 5.59 16 11 C 0.42 21.90 7.80 87.66 0.68 22.59 16 12 O -0.62 -38.92 15.24 -3.08 -0.05 -38.96 16 13 N -0.56 -30.07 5.29 -306.97 -1.62 -31.69 16 14 C -0.34 -19.94 9.68 84.04 0.81 -19.12 16 15 H 0.07 4.64 7.16 -2.91 -0.02 4.62 16 16 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 17 N -0.91 -49.82 13.05 21.66 0.28 -49.54 16 18 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 C -0.01 -0.26 11.61 84.93 0.99 0.72 16 23 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.10 1.64 6.19 -2.39 -0.01 1.63 16 26 H 0.18 -1.39 8.14 -2.39 -0.02 -1.41 16 27 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.18 -1.27 8.14 -2.39 -0.02 -1.29 16 29 H 0.19 6.40 6.56 -2.91 -0.02 6.38 16 30 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 31 H 0.15 4.34 8.05 -2.39 -0.02 4.32 16 32 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 33 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.21 5.66 8.06 -2.91 -0.02 5.64 16 Total: -1.00 -102.30 311.23 3.12 -99.18 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.40 Total: 23.35 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 7.10 Total: 7.26 kcal Atomic # 7 Polarization: -135.80 SS G_CDS: -3.61 Total: -139.41 kcal Atomic # 8 Polarization: -68.41 SS G_CDS: -2.55 Total: -70.97 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 34.26 SS G_CDS: -0.25 Total: 34.01 kcal Total: -102.30 3.12 -99.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307375581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.723 kcal (2) G-P(sol) polarization free energy of solvation -102.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds