Wall clock time and date at job start Tue Mar 31 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99742 * 2 1 4 4 C 1.50704 * 109.46887 * 274.99499 * 3 2 1 5 5 H 1.07997 * 119.99814 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99679 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00172 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99670 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47541 * 59.99940 * 8 6 4 10 10 H 1.48500 * 109.47151 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47258 * 299.99974 * 8 6 4 12 12 S 1.65599 * 120.00381 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.39905 * 336.46012 * 12 2 1 14 14 O 1.42095 * 106.40452 * 203.54281 * 12 2 1 15 15 N 1.65602 * 107.21657 * 89.99744 * 12 2 1 16 16 C 1.46498 * 119.99612 * 65.28266 * 15 12 2 17 17 C 1.50703 * 109.47212 * 164.72359 * 16 15 12 18 18 C 1.38604 * 120.07888 * 94.72170 * 17 16 15 19 19 C 1.38882 * 117.96618 * 179.74241 * 18 17 16 20 20 C 1.38606 * 117.97218 * 0.52230 * 19 18 17 21 21 N 1.31933 * 119.84616 * 359.73089 * 20 19 18 22 22 N 1.28353 * 122.18273 * 0.02562 * 21 20 19 23 23 H 1.09006 * 109.47452 * 270.00183 * 1 2 3 24 24 H 1.09002 * 109.47670 * 30.00345 * 1 2 3 25 25 H 1.09002 * 109.47109 * 150.00174 * 1 2 3 26 26 H 1.08994 * 109.47518 * 34.99789 * 3 2 1 27 27 H 1.09000 * 109.47078 * 155.00216 * 3 2 1 28 28 H 0.96999 * 119.99728 * 180.02562 * 7 6 4 29 29 H 0.97001 * 119.99942 * 244.99790 * 15 12 2 30 30 H 1.08996 * 109.46882 * 284.72133 * 16 15 12 31 31 H 1.08999 * 109.47498 * 44.72066 * 16 15 12 32 32 H 1.07997 * 121.01283 * 359.97438 * 18 17 16 33 33 H 1.08001 * 121.01090 * 180.23371 * 19 18 17 34 34 H 1.07995 * 120.07699 * 179.75036 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.9282 1.1937 -2.2331 6 6 3.0006 2.9503 -1.6665 7 7 3.5041 3.6465 -0.6708 8 14 3.1784 3.5666 -3.4209 9 1 1.8319 3.7730 -4.0120 10 1 3.9220 4.8520 -3.4211 11 1 3.9233 2.5643 -4.2245 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5455 14 8 3.5759 -1.1565 0.5450 15 7 2.5381 -1.8593 -1.5810 16 6 3.3911 -1.0323 -2.4380 17 6 3.7551 -1.8046 -3.6798 18 6 3.0055 -1.6545 -4.8360 19 6 3.3832 -2.3833 -5.9563 20 6 4.4796 -3.2240 -5.8457 21 7 5.1306 -3.3070 -4.7012 22 7 4.7845 -2.6298 -3.6672 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6501 2.0044 0.5894 27 1 3.1857 1.1178 0.4343 28 1 3.9675 4.4801 -0.8474 29 1 2.1201 -2.6582 -1.9388 30 1 2.8546 -0.1258 -2.7182 31 1 4.2990 -0.7647 -1.8974 32 1 2.1561 -0.9882 -4.8658 33 1 2.8363 -2.3010 -6.8839 34 1 4.8004 -3.8096 -6.6945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326446027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:09 Heat of formation + Delta-G solvation = -40.003581 kcal Electronic energy + Delta-G solvation = -21070.265290 eV Core-core repulsion = 17743.786777 eV Total energy + Delta-G solvation = -3326.478514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.99506 -38.35577 -37.28112 -36.91298 -36.76309 -34.44706 -34.07957 -33.10316 -29.65657 -27.75254 -26.73664 -25.55657 -24.21900 -23.76534 -20.48658 -19.04487 -18.69206 -18.46948 -18.23647 -17.79704 -17.36431 -16.73746 -16.32946 -16.00633 -15.43456 -15.13414 -14.91965 -14.65183 -14.24505 -14.02027 -13.91863 -13.83107 -13.38338 -13.21963 -13.15475 -12.95847 -12.88517 -12.44561 -12.33699 -11.89200 -11.85776 -11.67089 -11.18769 -10.99571 -10.73647 -10.52969 -10.42707 -9.76267 -8.12943 -6.27205 -0.43689 -0.12839 -0.00283 1.47566 1.49147 1.56076 1.99196 2.44956 2.52900 2.68430 2.93272 3.20153 3.40345 3.57529 3.71527 3.86703 4.01588 4.11325 4.22402 4.49690 4.56077 4.75782 4.81247 4.86805 4.92053 5.11277 5.12987 5.31430 5.35194 5.51915 5.78054 5.85769 6.10416 6.13453 6.84134 7.42636 7.72141 8.95316 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.012150 B = 0.008167 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.946107 B = 3427.772719 C = 5054.302899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.999 5.999 3 C 0.253 3.747 4 C -0.543 4.543 5 H 0.089 0.911 6 C 0.012 3.988 7 N -0.929 5.929 8 Si 0.952 3.048 9 H -0.258 1.258 10 H -0.296 1.296 11 H -0.261 1.261 12 S 2.806 3.194 13 O -1.005 7.005 14 O -1.016 7.016 15 N -1.108 6.108 16 C 0.172 3.828 17 C 0.051 3.949 18 C -0.108 4.108 19 C -0.099 4.099 20 C 0.037 3.963 21 N -0.285 5.285 22 N -0.273 5.273 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.022 0.978 27 H 0.018 0.982 28 H 0.264 0.736 29 H 0.420 0.580 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.179 0.821 33 H 0.200 0.800 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 -9.538 -13.513 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.841 5.841 3 C 0.129 3.871 4 C -0.582 4.582 5 H 0.107 0.893 6 C -0.188 4.188 7 N -0.568 5.568 8 Si 0.777 3.223 9 H -0.182 1.182 10 H -0.222 1.222 11 H -0.185 1.185 12 S 2.814 3.186 13 O -0.989 6.989 14 O -0.999 6.999 15 N -0.869 5.869 16 C 0.045 3.955 17 C -0.096 4.096 18 C -0.137 4.137 19 C -0.128 4.128 20 C -0.127 4.127 21 N -0.125 5.125 22 N -0.116 5.116 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.255 0.745 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.197 0.803 33 H 0.217 0.783 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.641 -10.377 -11.723 16.329 hybrid contribution -0.889 1.232 -1.485 2.124 sum -5.530 -9.145 -13.208 16.990 Atomic orbital electron populations 1.21491 0.77649 1.03674 1.01964 1.57487 1.15781 1.21800 1.89045 1.18858 0.90908 0.80059 0.97259 1.21881 1.36080 1.06790 0.93440 0.89347 1.25828 0.94962 0.96932 1.01046 1.70070 1.37646 1.15671 1.33454 0.85692 0.78945 0.77634 0.80073 1.18241 1.22246 1.18502 1.00971 0.72374 0.72161 0.73127 1.93535 1.67075 1.60818 1.77434 1.93539 1.43063 1.85491 1.77827 1.55548 1.62544 1.37758 1.31078 1.20288 0.95107 0.92451 0.87700 1.22870 0.93720 0.95898 0.97109 1.22751 1.00141 0.98817 0.92039 1.22979 0.96136 0.93003 1.00699 1.25056 0.92934 0.96882 0.97846 1.72980 1.25321 1.16298 0.97896 1.72939 1.13274 1.04072 1.21288 0.92804 0.90189 0.90185 0.95970 0.96433 0.92699 0.74474 0.86761 0.91362 0.80332 0.78254 0.77245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.00 10.31 127.77 1.32 4.32 16 2 N -1.00 -39.10 3.23 -543.22 -1.75 -40.85 16 3 C 0.25 12.19 5.41 85.63 0.46 12.66 16 4 C -0.54 -25.85 8.07 25.60 0.21 -25.64 16 5 H 0.09 3.71 5.83 -2.91 -0.02 3.69 16 6 C 0.01 0.61 5.46 84.66 0.46 1.08 16 7 N -0.93 -52.12 13.29 21.45 0.28 -51.83 16 8 Si 0.95 38.58 29.54 68.60 2.03 40.60 16 9 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 10 H -0.30 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 12 S 2.81 109.94 6.11 -56.49 -0.35 109.60 16 13 O -1.00 -39.88 17.21 -128.00 -2.20 -42.08 16 14 O -1.02 -49.10 16.15 -128.00 -2.07 -51.17 16 15 N -1.11 -35.53 6.05 -190.79 -1.15 -36.68 16 16 C 0.17 5.83 6.23 85.63 0.53 6.37 16 17 C 0.05 1.50 6.26 42.63 0.27 1.77 16 18 C -0.11 -2.16 9.86 22.51 0.22 -1.94 16 19 C -0.10 -1.38 10.21 22.51 0.23 -1.15 16 20 C 0.04 0.66 11.31 84.77 0.96 1.62 16 21 N -0.28 -8.21 11.50 -57.26 -0.66 -8.87 16 22 N -0.27 -9.23 11.43 -47.62 -0.54 -9.78 16 23 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.08 2.37 8.07 -2.39 -0.02 2.35 16 25 H 0.08 2.03 7.79 -2.39 -0.02 2.01 16 26 H 0.02 1.13 8.11 -2.39 -0.02 1.11 16 27 H 0.02 0.97 6.91 -2.39 -0.02 0.96 16 28 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.42 11.01 8.64 -96.74 -0.84 10.18 16 30 H 0.11 3.82 4.78 -2.39 -0.01 3.80 16 31 H 0.07 2.77 7.74 -2.39 -0.02 2.75 16 32 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 34 H 0.21 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -73.61 307.43 -1.45 -75.06 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.30 Total: 16.92 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 4.66 Total: -0.92 kcal Atomic # 7 Polarization: -144.19 SS G_CDS: -3.82 Total: -148.01 kcal Atomic # 8 Polarization: -88.98 SS G_CDS: -4.27 Total: -93.25 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.60 kcal Atomic # 16 Polarization: 109.94 SS G_CDS: -0.35 Total: 109.60 kcal Total: -73.61 -1.45 -75.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326446027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.053 kcal (2) G-P(sol) polarization free energy of solvation -73.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds