Wall clock time and date at job start Tue Mar 31 2020 02:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34142 * 118.70654 * 2 1 4 4 O 1.21216 * 119.36051 * 0.57374 * 3 2 1 5 5 C 1.50588 * 121.27658 * 180.54598 * 3 2 1 6 6 C 1.53246 * 109.16373 * 330.90640 * 5 3 2 7 7 C 1.53238 * 108.56796 * 55.61502 * 6 5 3 8 8 H 1.09000 * 109.52713 * 184.41382 * 7 6 5 9 9 N 1.46504 * 109.52052 * 64.28871 * 7 6 5 10 10 C 1.34775 * 119.99561 * 154.99825 * 9 7 6 11 11 O 1.21282 * 120.00577 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99768 * 179.97438 * 10 9 7 13 13 S 1.81002 * 109.47349 * 180.02562 * 12 10 9 14 14 C 1.76199 * 100.00182 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99976 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99949 * 179.97438 * 14 13 12 17 17 N 1.31630 * 119.99849 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46692 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99825 * 18 16 14 21 21 H 1.48497 * 109.47025 * 240.00183 * 18 16 14 22 22 C 1.34144 * 118.70353 * 180.02562 * 2 1 3 23 23 O 1.21230 * 119.36282 * 359.44979 * 22 2 1 24 24 H 1.08998 * 109.47250 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46996 * 119.99727 * 1 2 3 26 26 H 1.08999 * 109.47059 * 239.99586 * 1 2 3 27 27 H 1.09002 * 109.52152 * 211.00552 * 5 3 2 28 28 H 1.09000 * 109.52214 * 90.81163 * 5 3 2 29 29 H 1.09003 * 109.61911 * 295.88908 * 6 5 3 30 30 H 1.09007 * 109.61881 * 175.34073 * 6 5 3 31 31 H 0.96993 * 120.00065 * 335.00084 * 9 7 6 32 32 H 1.09005 * 109.46867 * 60.00428 * 12 10 9 33 33 H 1.09000 * 109.47235 * 300.00468 * 12 10 9 34 34 H 0.97005 * 119.99878 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1765 0.0000 4 8 1.4682 2.2052 0.0106 5 6 3.6136 1.2441 -0.0123 6 6 4.1787 -0.0002 0.6812 7 6 3.6136 -1.2443 -0.0123 8 1 3.9433 -2.1381 0.5174 9 7 4.0902 -1.2920 -1.3968 10 6 4.1674 -2.4725 -2.0425 11 8 3.8418 -3.4952 -1.4777 12 6 4.6571 -2.5216 -3.4669 13 16 4.6451 -4.2350 -4.0504 14 6 5.2460 -4.0039 -5.6905 15 1 5.4931 -3.0125 -6.0405 16 6 5.4028 -5.0962 -6.5325 17 7 5.1021 -6.3046 -6.1059 18 14 6.0391 -4.8511 -8.2716 19 1 6.3010 -3.4080 -8.5041 20 1 7.2985 -5.6174 -8.4504 21 1 5.0242 -5.3332 -9.2426 22 6 2.1093 -1.1766 -0.0005 23 8 1.4681 -2.2054 0.0092 24 1 -0.3634 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 -0.3633 -0.5139 0.8899 27 1 3.9424 2.1377 0.5183 28 1 3.9683 1.2797 -1.0424 29 1 3.8837 -0.0001 1.7305 30 1 5.2661 -0.0001 0.6040 31 1 4.3503 -0.4741 -1.8486 32 1 5.6724 -2.1279 -3.5158 33 1 4.0030 -1.9190 -4.0970 34 1 5.2113 -7.0679 -6.6944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328008686.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:39 Heat of formation + Delta-G solvation = -130.060692 kcal Electronic energy + Delta-G solvation = -20281.102063 eV Core-core repulsion = 16918.425629 eV Total energy + Delta-G solvation = -3362.676434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.90878 -40.70316 -39.86175 -37.28492 -36.17670 -34.57886 -33.86877 -31.09534 -28.84427 -28.54116 -27.62115 -24.47591 -23.92244 -22.26326 -19.96749 -19.44445 -18.67414 -18.38575 -17.95384 -17.59572 -17.11891 -16.87328 -16.53830 -15.96929 -15.75262 -15.57229 -15.07818 -14.72235 -14.62242 -14.28908 -14.13991 -13.77174 -13.62213 -13.44683 -13.15399 -12.91355 -12.62069 -12.46519 -12.30611 -11.80732 -11.69881 -11.29082 -11.15336 -11.05279 -10.89827 -10.34538 -10.25893 -8.66482 -8.34168 -6.12280 0.31311 1.22762 1.31721 1.42386 1.44983 1.55877 1.62867 1.69094 2.24500 2.28146 2.84932 3.00616 3.30896 3.44505 3.50413 3.73043 3.90444 4.19498 4.24391 4.30508 4.30930 4.33641 4.47884 4.51274 4.67588 4.79853 4.88280 5.04197 5.16648 5.43185 5.83889 6.20722 6.31069 6.33337 6.63501 7.07581 7.13064 8.75259 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.003579 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.458818 B = 7822.557860 C = 7974.223004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.570 5.570 3 C 0.521 3.479 4 O -0.534 6.534 5 C -0.138 4.138 6 C -0.118 4.118 7 C 0.133 3.867 8 H 0.120 0.880 9 N -0.701 5.701 10 C 0.533 3.467 11 O -0.545 6.545 12 C -0.128 4.128 13 S -0.156 6.156 14 C -0.544 4.544 15 H 0.086 0.914 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 0.999 3.001 19 H -0.254 1.254 20 H -0.274 1.274 21 H -0.277 1.277 22 C 0.504 3.496 23 O -0.522 6.522 24 H 0.105 0.895 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.150 0.850 28 H 0.133 0.867 29 H 0.112 0.888 30 H 0.140 0.860 31 H 0.424 0.576 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 20.444 13.215 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.313 5.313 3 C 0.313 3.687 4 O -0.409 6.409 5 C -0.177 4.177 6 C -0.155 4.155 7 C 0.024 3.976 8 H 0.138 0.862 9 N -0.360 5.360 10 C 0.319 3.681 11 O -0.420 6.420 12 C -0.279 4.279 13 S 0.072 5.928 14 C -0.692 4.692 15 H 0.104 0.896 16 C -0.192 4.192 17 N -0.549 5.549 18 Si 0.821 3.179 19 H -0.178 1.178 20 H -0.199 1.199 21 H -0.203 1.203 22 C 0.292 3.708 23 O -0.393 6.393 24 H 0.123 0.877 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.130 0.870 30 H 0.158 0.842 31 H 0.264 0.736 32 H 0.141 0.859 33 H 0.127 0.873 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.021 18.561 14.142 23.357 hybrid contribution 0.095 0.810 -1.867 2.038 sum -0.926 19.371 12.274 22.951 Atomic orbital electron populations 1.21980 0.78007 1.05089 1.03528 1.46719 1.10352 1.08031 1.66167 1.21886 0.93217 0.81239 0.72316 1.90726 1.69755 1.33735 1.46647 1.22147 0.85976 1.02752 1.06780 1.22178 1.05005 0.87739 1.00572 1.21342 0.86082 1.04960 0.85234 0.86217 1.45624 1.67676 1.09560 1.13126 1.20262 0.76511 0.83602 0.87716 1.90776 1.47800 1.35200 1.68268 1.23365 1.06237 1.03231 0.95099 1.85710 1.86765 1.05241 1.15127 1.23243 1.50480 0.97091 0.98355 0.89613 1.26129 0.95066 0.93948 1.04027 1.70198 1.46753 0.99615 1.38346 0.84904 0.77776 0.79175 0.76085 1.17786 1.19924 1.20260 1.22145 0.92854 0.82072 0.73711 1.90799 1.69491 1.34805 1.44174 0.87680 0.91603 0.90328 0.83241 0.84971 0.86990 0.84187 0.73589 0.85920 0.87332 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 9.81 127.77 1.25 2.39 16 2 N -0.57 -11.70 2.93 -781.14 -2.29 -13.98 16 3 C 0.52 8.39 7.48 87.72 0.66 9.04 16 4 O -0.53 -11.81 16.19 -2.83 -0.05 -11.86 16 5 C -0.14 -0.74 5.88 29.90 0.18 -0.57 16 6 C -0.12 -0.63 5.73 30.76 0.18 -0.46 16 7 C 0.13 2.39 2.75 44.29 0.12 2.51 16 8 H 0.12 2.64 7.58 -2.39 -0.02 2.62 16 9 N -0.70 -14.05 4.99 -445.87 -2.23 -16.27 16 10 C 0.53 18.06 7.81 87.66 0.68 18.74 16 11 O -0.55 -24.56 15.52 -3.04 -0.05 -24.61 16 12 C -0.13 -4.70 6.16 71.24 0.44 -4.26 16 13 S -0.16 -8.46 20.57 -56.49 -1.16 -9.63 16 14 C -0.54 -30.36 9.50 67.96 0.65 -29.72 16 15 H 0.09 4.39 7.80 -2.91 -0.02 4.37 16 16 C 0.01 0.73 5.49 84.86 0.47 1.19 16 17 N -0.91 -55.81 13.22 21.65 0.29 -55.53 16 18 Si 1.00 42.94 29.55 68.60 2.03 44.97 16 19 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.50 12.56 7.02 87.72 0.62 13.17 16 23 O -0.52 -18.75 16.93 -2.88 -0.05 -18.80 16 24 H 0.10 1.96 6.73 -2.39 -0.02 1.95 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 27 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.13 0.23 6.81 -2.39 -0.02 0.21 16 29 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.14 0.01 8.14 -2.38 -0.02 -0.01 16 31 H 0.42 4.73 7.15 -92.71 -0.66 4.07 16 32 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 33 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 34 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -88.41 310.24 2.21 -86.20 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.48 Total: 7.44 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 5.23 Total: 12.06 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -4.22 Total: -85.79 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -0.14 Total: -55.26 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -88.41 2.21 -86.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328008686.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.862 kcal (2) G-P(sol) polarization free energy of solvation -88.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds