Wall clock time and date at job start Tue Mar 31 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00099 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00164 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00181 * 3 2 1 6 6 H 1.48499 * 109.47352 * 150.00011 * 3 2 1 7 7 C 1.38955 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99763 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00445 * 179.72381 * 7 2 1 10 10 C 1.34774 * 120.00310 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00003 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00110 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47272 * 179.97438 * 12 10 9 14 14 C 1.34778 * 120.00064 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99828 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99743 * 179.97438 * 14 13 12 17 17 C 1.50693 * 110.27770 * 274.36237 * 16 14 13 18 18 O 1.20823 * 120.00124 * 264.30055 * 17 16 14 19 19 O 1.34233 * 120.00129 * 84.30210 * 17 16 14 20 20 C 1.54956 * 110.30811 * 152.16511 * 16 14 13 21 21 C 1.55303 * 100.94208 * 277.53295 * 20 16 14 22 22 C 1.54383 * 102.25078 * 325.86427 * 21 20 16 23 23 O 1.43230 * 107.59066 * 21.36213 * 22 21 20 24 24 H 0.97000 * 119.99719 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99649 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47519 * 300.00142 * 12 10 9 27 27 H 1.09001 * 109.46880 * 60.00149 * 12 10 9 28 28 H 0.97004 * 119.99617 * 0.02562 * 13 12 10 29 29 H 0.96694 * 116.99918 * 180.02562 * 19 17 16 30 30 H 1.08998 * 111.12138 * 35.45041 * 20 16 14 31 31 H 1.08992 * 111.12366 * 159.60905 * 20 16 14 32 32 H 1.09005 * 110.84381 * 207.67682 * 21 20 16 33 33 H 1.08994 * 111.02475 * 84.13199 * 21 20 16 34 34 H 1.09002 * 109.83370 * 261.84379 * 22 21 20 35 35 H 1.09003 * 109.83178 * 140.87504 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3798 -1.2034 -0.0052 10 6 4.0537 -2.3706 -0.0052 11 8 3.4473 -3.4210 -0.0006 12 6 5.5608 -2.3706 -0.0121 13 7 6.0491 -3.7517 -0.0100 14 6 7.3742 -3.9980 -0.0148 15 8 8.1622 -3.0762 -0.0203 16 6 7.8765 -5.4188 -0.0121 17 6 7.9552 -5.9423 1.3988 18 8 9.0007 -5.8970 2.0026 19 8 6.8636 -6.4590 1.9848 20 6 9.2645 -5.4998 -0.6963 21 6 8.8527 -5.5579 -2.1926 22 6 7.5333 -6.3578 -2.1384 23 8 7.0178 -6.2527 -0.8063 24 1 -0.4850 0.8401 0.0004 25 1 3.8648 -0.3633 -0.0100 26 1 5.9201 -1.8591 -0.9050 27 1 5.9281 -1.8544 0.8749 28 1 5.4187 -4.4890 -0.0053 29 1 6.9630 -6.7817 2.8909 30 1 9.8583 -4.6102 -0.4865 31 1 9.7964 -6.4038 -0.3998 32 1 9.6028 -6.0863 -2.7811 33 1 8.6837 -4.5575 -2.5908 34 1 7.7247 -7.4035 -2.3795 35 1 6.8177 -5.9391 -2.8460 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:19 Heat of formation + Delta-G solvation = -224.883938 kcal Electronic energy + Delta-G solvation = -23050.653769 eV Core-core repulsion = 19241.112620 eV Total energy + Delta-G solvation = -3809.541150 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.109 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.51468 -40.90832 -40.31318 -39.39268 -37.41488 -36.36105 -35.51578 -33.84833 -33.26760 -31.83870 -29.47775 -26.52662 -25.61285 -23.65140 -22.88876 -21.51772 -21.26118 -20.56961 -19.54229 -19.28180 -18.52393 -17.68102 -17.26259 -16.91092 -16.83129 -16.56356 -16.45251 -16.19799 -15.50137 -15.32940 -14.98740 -14.68097 -14.32057 -14.26228 -14.05298 -13.67577 -13.21626 -13.00609 -12.97157 -12.79506 -12.71727 -12.45206 -12.30865 -12.00651 -11.99331 -11.60920 -11.58741 -10.71361 -10.62849 -10.39935 -10.30710 -8.45714 -6.08045 0.55957 1.09970 1.31031 1.33774 1.43886 1.61242 1.77344 1.93755 2.20396 2.32466 2.78852 3.10212 3.24226 3.34789 3.68511 3.93844 3.96140 4.06103 4.14959 4.30592 4.33412 4.55007 4.73799 4.84154 4.86500 5.04707 5.09130 5.25854 5.45800 5.50051 5.87349 6.22117 6.47346 6.70892 6.77565 6.80967 7.27549 7.76744 8.70719 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.026501 B = 0.003883 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.317504 B = 7209.375558 C = 7297.824801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.959 3.041 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.233 1.233 7 C -0.332 4.332 8 H 0.063 0.937 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.612 6.612 12 C 0.113 3.887 13 N -0.690 5.690 14 C 0.511 3.489 15 O -0.545 6.545 16 C 0.100 3.900 17 C 0.503 3.497 18 O -0.512 6.512 19 O -0.494 6.494 20 C -0.119 4.119 21 C -0.147 4.147 22 C 0.032 3.968 23 O -0.359 6.359 24 H 0.281 0.719 25 H 0.392 0.608 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.418 0.582 29 H 0.434 0.566 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.226 -9.040 -2.738 22.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.156 1.156 7 C -0.461 4.461 8 H 0.081 0.919 9 N -0.216 5.216 10 C 0.231 3.769 11 O -0.497 6.497 12 C -0.014 4.014 13 N -0.344 5.344 14 C 0.295 3.705 15 O -0.423 6.423 16 C 0.055 3.945 17 C 0.344 3.656 18 O -0.401 6.401 19 O -0.308 6.308 20 C -0.156 4.156 21 C -0.184 4.184 22 C -0.043 4.043 23 O -0.279 6.279 24 H 0.091 0.909 25 H 0.228 0.772 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.257 0.743 29 H 0.297 0.703 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.172 -8.920 -2.895 22.245 hybrid contribution -0.535 0.547 0.688 1.028 sum 19.637 -8.374 -2.207 21.462 Atomic orbital electron populations 1.69781 1.08072 1.29490 1.49148 1.26064 0.96405 1.02573 0.95634 0.85449 0.79566 0.76994 0.80132 1.17938 1.19884 1.15596 1.19031 0.80920 0.95299 1.50862 0.91875 1.41899 1.06146 1.07337 1.66196 1.20426 0.89901 0.83957 0.82630 1.90559 1.70644 1.32310 1.56231 1.21046 0.90051 0.84551 1.05780 1.45707 1.07179 1.09362 1.72113 1.20471 0.82357 0.90620 0.77084 1.90716 1.55615 1.45376 1.50617 1.22337 0.95532 0.88033 0.88560 1.22490 0.81342 0.73952 0.87830 1.90755 1.31525 1.53145 1.64708 1.84601 1.38138 1.71671 1.36349 1.23192 0.91517 1.06209 0.94716 1.23219 0.97746 1.02160 0.95270 1.23668 0.95715 1.02896 0.82010 1.88623 1.48372 1.67225 1.23631 0.90890 0.77175 0.86765 0.87386 0.74261 0.70333 0.87905 0.87150 0.85467 0.90409 0.87500 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.98 13.96 21.66 0.30 -53.68 16 2 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 3 Si 0.96 37.48 27.73 68.60 1.90 39.38 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.23 -7.73 6.53 99.48 0.65 -7.08 16 7 C -0.33 -18.70 10.16 84.04 0.85 -17.85 16 8 H 0.06 4.22 7.39 -2.91 -0.02 4.19 16 9 N -0.58 -26.10 5.09 -306.98 -1.56 -27.66 16 10 C 0.44 19.18 7.85 87.66 0.69 19.87 16 11 O -0.61 -31.72 15.24 -3.08 -0.05 -31.77 16 12 C 0.11 3.62 6.15 85.63 0.53 4.15 16 13 N -0.69 -21.87 5.45 -466.79 -2.54 -24.41 16 14 C 0.51 15.09 6.50 87.66 0.57 15.66 16 15 O -0.54 -17.84 15.83 -3.02 -0.05 -17.89 16 16 C 0.10 2.46 1.06 -11.62 -0.01 2.45 16 17 C 0.50 12.68 7.20 71.23 0.51 13.19 16 18 O -0.51 -14.39 17.03 21.97 0.37 -14.01 16 19 O -0.49 -10.59 13.25 -47.06 -0.62 -11.21 16 20 C -0.12 -2.23 5.45 32.05 0.17 -2.06 16 21 C -0.15 -2.04 6.80 31.85 0.22 -1.82 16 22 C 0.03 0.52 7.78 72.45 0.56 1.09 16 23 O -0.36 -8.46 9.98 -138.11 -1.38 -9.84 16 24 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.39 14.77 5.77 -92.71 -0.53 14.24 16 26 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 27 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.42 14.32 6.96 -92.71 -0.64 13.68 16 29 H 0.43 4.85 9.10 -74.06 -0.67 4.18 16 30 H 0.10 2.17 7.19 -2.39 -0.02 2.15 16 31 H 0.11 1.74 7.94 -2.39 -0.02 1.72 16 32 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -77.06 310.26 0.20 -76.86 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -0.73 Total: 39.43 kcal Atomic # 6 Polarization: 30.24 SS G_CDS: 4.56 Total: 34.80 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -3.80 Total: -105.75 kcal Atomic # 8 Polarization: -83.00 SS G_CDS: -1.72 Total: -84.72 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 1.90 Total: 39.38 kcal Total: -77.06 0.20 -76.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.024 kcal (2) G-P(sol) polarization free energy of solvation -77.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds