Wall clock time and date at job start Tue Mar 31 2020 02:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42906 * 113.99763 * 2 1 4 4 C 1.52995 * 109.47128 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46936 * 64.99920 * 4 3 2 6 6 C 1.37098 * 120.00188 * 84.37940 * 5 4 3 7 7 H 1.07999 * 120.00272 * 218.15642 * 6 5 4 8 8 C 1.38950 * 119.99688 * 38.14850 * 6 5 4 9 9 N 1.31411 * 120.00443 * 20.58611 * 8 6 5 10 10 Si 1.86802 * 120.00009 * 200.58094 * 8 6 5 11 11 H 1.48497 * 109.47134 * 60.00157 * 10 8 6 12 12 H 1.48502 * 109.47420 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47180 * 300.00555 * 10 8 6 14 14 C 1.34774 * 120.00114 * 264.37431 * 5 4 3 15 15 O 1.21297 * 120.00039 * 0.02562 * 14 5 4 16 16 C 1.50701 * 120.00194 * 180.02562 * 14 5 4 17 17 H 1.08998 * 110.86274 * 307.34726 * 16 14 5 18 18 C 1.54733 * 110.97318 * 71.19047 * 16 14 5 19 19 C 1.51695 * 102.55054 * 142.33137 * 18 16 14 20 20 C 1.47472 * 125.86530 * 164.56952 * 19 18 16 21 21 O 1.21467 * 120.00208 * 0.02730 * 20 19 18 22 22 O 1.34756 * 119.99932 * 180.02562 * 20 19 18 23 23 N 1.29060 * 108.26878 * 344.61413 * 19 18 16 24 24 O 1.41389 * 112.87937 * 359.67500 * 23 19 18 25 25 H 1.09004 * 109.47577 * 299.99768 * 1 2 3 26 26 H 1.08999 * 109.47453 * 59.99970 * 1 2 3 27 27 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46905 * 300.00228 * 3 2 1 29 29 H 1.09005 * 109.47131 * 59.99893 * 3 2 1 30 30 H 1.08993 * 109.47705 * 184.99990 * 4 3 2 31 31 H 1.08997 * 109.47273 * 305.00191 * 4 3 2 32 32 H 0.96998 * 120.00620 * 180.02562 * 9 8 6 33 33 H 1.08998 * 110.79381 * 260.59690 * 18 16 14 34 34 H 1.08997 * 110.79687 * 24.07054 * 18 16 14 35 35 H 0.96704 * 117.00017 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9765 0.5641 -1.2509 6 6 4.1572 1.3334 -2.3712 7 1 3.8773 0.9492 -3.3410 8 6 4.7002 2.6075 -2.2589 9 7 5.4024 2.9312 -1.1964 10 14 4.4321 3.8602 -3.6184 11 1 2.9770 4.1040 -3.7870 12 1 5.1094 5.1323 -3.2601 13 1 4.9972 3.3400 -4.8894 14 6 4.2050 -0.7632 -1.3009 15 8 4.0449 -1.4440 -0.3098 16 6 4.6594 -1.4016 -2.5882 17 1 3.9913 -1.1395 -3.4085 18 6 6.1200 -1.0094 -2.9154 19 6 6.6822 -2.2910 -3.5007 20 6 7.9313 -2.4121 -4.2752 21 8 8.6092 -1.4278 -4.4923 22 8 8.3208 -3.6147 -4.7420 23 7 5.8790 -3.2571 -3.2053 24 8 4.7647 -2.8328 -2.4455 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6885 1.8464 -0.8900 29 1 1.6885 1.8465 0.8900 30 1 3.9784 2.1766 0.0902 31 1 3.8507 0.5687 0.8426 32 1 5.7812 3.8207 -1.1178 33 1 6.1492 -0.2037 -3.6489 34 1 6.6578 -0.7293 -2.0097 35 1 9.1469 -3.6443 -5.2439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604584693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:50 Heat of formation + Delta-G solvation = -150.581906 kcal Electronic energy + Delta-G solvation = -23408.635393 eV Core-core repulsion = 19602.316221 eV Total energy + Delta-G solvation = -3806.319172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.01707 -41.04357 -39.93186 -38.47399 -37.33630 -36.70916 -34.38637 -33.57322 -32.53539 -30.47870 -27.24317 -26.92729 -26.47782 -25.53356 -23.30112 -21.55136 -21.16620 -19.48384 -19.15350 -18.63881 -17.77610 -17.27475 -17.10960 -16.98676 -16.88678 -16.39458 -16.17156 -16.02439 -15.54548 -15.11713 -14.83546 -14.36984 -14.15162 -13.93207 -13.45555 -13.38813 -13.22412 -13.02384 -12.76577 -12.66332 -12.61827 -12.39536 -12.27167 -12.13889 -12.09595 -11.90133 -11.22531 -10.96365 -10.55401 -10.26571 -9.49412 -8.30956 -6.10993 -0.50343 1.08338 1.45357 1.48078 1.53901 1.60594 1.78492 1.93892 2.32517 2.77446 2.97140 3.11381 3.16107 3.40589 3.65099 3.90165 4.15493 4.25998 4.29158 4.38707 4.53687 4.57352 4.59157 4.64862 4.71496 4.80783 4.99354 5.22269 5.25941 5.47721 5.72274 5.95470 6.34840 6.43956 6.74794 7.10253 7.47793 7.96613 8.70519 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.006546 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.793337 B = 4276.693608 C = 5773.601015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.059 3.941 4 C 0.112 3.888 5 N -0.428 5.428 6 C -0.363 4.363 7 H 0.100 0.900 8 C 0.019 3.981 9 N -0.882 5.882 10 Si 0.974 3.026 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.262 1.262 14 C 0.469 3.531 15 O -0.610 6.610 16 C 0.051 3.949 17 H 0.124 0.876 18 C -0.093 4.093 19 C 0.064 3.936 20 C 0.582 3.418 21 O -0.500 6.500 22 O -0.485 6.485 23 N -0.224 5.224 24 O -0.183 6.183 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.044 0.956 32 H 0.276 0.724 33 H 0.135 0.865 34 H 0.095 0.905 35 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.053 -1.980 -6.737 7.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.018 4.018 4 C -0.011 4.011 5 N -0.147 5.147 6 C -0.490 4.490 7 H 0.117 0.883 8 C -0.186 4.186 9 N -0.518 5.518 10 Si 0.798 3.202 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.186 1.186 14 C 0.256 3.744 15 O -0.496 6.496 16 C -0.010 4.010 17 H 0.141 0.859 18 C -0.133 4.133 19 C -0.129 4.129 20 C 0.422 3.578 21 O -0.385 6.385 22 O -0.300 6.300 23 N 0.031 4.969 24 O -0.206 6.206 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.153 0.847 34 H 0.114 0.886 35 H 0.311 0.689 Dipole moment (debyes) X Y Z Total from point charges -0.252 -3.192 -5.996 6.797 hybrid contribution 0.246 1.804 -0.432 1.871 sum -0.006 -1.388 -6.427 6.576 Atomic orbital electron populations 1.22858 0.80447 1.03066 1.00560 1.88066 1.20805 1.28641 1.95429 1.22911 0.94094 0.84451 1.00323 1.21547 0.92114 1.00827 0.86650 1.43361 1.56245 1.04353 1.10770 1.19671 1.43183 0.98585 0.87538 0.88271 1.26058 0.92861 1.00162 0.99505 1.69940 1.29076 1.21902 1.30873 0.85275 0.78770 0.77344 0.78843 1.19329 1.21089 1.18606 1.20183 0.81462 0.84192 0.88519 1.90567 1.57621 1.63671 1.37717 1.23400 0.98321 0.80602 0.98678 0.85874 1.22474 0.91469 0.96027 1.03308 1.25081 0.94403 0.95510 0.97916 1.18715 0.81757 0.81583 0.75791 1.90989 1.53297 1.39364 1.54895 1.84603 1.47631 1.30723 1.67022 1.78444 0.95244 1.22602 1.00568 1.91341 1.40601 1.21734 1.66878 0.92845 0.93673 0.89470 0.93094 0.91503 0.86884 0.93748 0.91414 0.84682 0.88631 0.68880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.41 -17.24 10.25 -148.98 -1.53 -18.76 16 3 C 0.06 2.35 6.25 71.98 0.45 2.80 16 4 C 0.11 5.20 5.51 86.38 0.48 5.68 16 5 N -0.43 -20.58 2.48 -635.55 -1.58 -22.16 16 6 C -0.36 -16.43 7.81 84.04 0.66 -15.78 16 7 H 0.10 4.19 6.93 -2.91 -0.02 4.17 16 8 C 0.02 0.86 5.02 84.93 0.43 1.29 16 9 N -0.88 -42.23 11.39 21.66 0.25 -41.98 16 10 Si 0.97 35.43 29.60 68.60 2.03 37.46 16 11 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 12 H -0.29 -10.49 7.11 99.48 0.71 -9.79 16 13 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 14 C 0.47 23.31 6.75 87.66 0.59 23.90 16 15 O -0.61 -34.66 15.91 14.97 0.24 -34.42 16 16 C 0.05 2.13 3.34 30.44 0.10 2.23 16 17 H 0.12 4.62 7.36 -2.39 -0.02 4.60 16 18 C -0.09 -3.43 5.68 30.76 0.17 -3.26 16 19 C 0.06 2.09 7.30 45.72 0.33 2.43 16 20 C 0.58 15.36 8.34 70.26 0.59 15.94 16 21 O -0.50 -15.02 17.74 19.94 0.35 -14.67 16 22 O -0.49 -8.98 13.43 -56.66 -0.76 -9.74 16 23 N -0.22 -8.23 12.51 -42.36 -0.53 -8.76 16 24 O -0.18 -7.99 11.82 -20.31 -0.24 -8.23 16 25 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.11 5.37 5.51 -2.39 -0.01 5.36 16 31 H 0.04 2.23 7.26 -2.39 -0.02 2.21 16 32 H 0.28 12.52 8.31 -92.71 -0.77 11.75 16 33 H 0.14 4.60 7.99 -2.39 -0.02 4.58 16 34 H 0.10 3.88 7.90 -2.39 -0.02 3.87 16 35 H 0.45 2.77 9.11 -74.05 -0.67 2.10 16 Total: -1.00 -67.07 314.53 3.75 -63.32 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.47 Total: 20.65 kcal Atomic # 6 Polarization: 32.25 SS G_CDS: 5.04 Total: 37.30 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.86 Total: -72.90 kcal Atomic # 8 Polarization: -83.88 SS G_CDS: -1.94 Total: -85.82 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Total: -67.07 3.75 -63.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604584693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.266 kcal (2) G-P(sol) polarization free energy of solvation -67.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds