Wall clock time and date at job start Tue Mar 31 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 N 1.46496 * 109.47070 * 185.00131 * 4 2 1 6 6 C 1.34775 * 119.99828 * 180.02562 * 5 4 2 7 7 O 1.21573 * 120.00285 * 359.97438 * 6 5 4 8 8 C 1.47675 * 120.00156 * 180.02562 * 6 5 4 9 9 N 1.31823 * 126.45935 * 359.68193 * 8 6 5 10 10 N 1.28472 * 110.13479 * 179.85803 * 9 8 6 11 11 C 1.46496 * 124.93141 * 180.13378 * 10 9 8 12 12 C 1.35639 * 110.13075 * 0.41888 * 10 9 8 13 13 C 1.35463 * 107.13311 * 359.74949 * 12 10 9 14 14 Cl 1.73597 * 127.24090 * 179.97438 * 13 12 10 15 15 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 16 16 C 1.36937 * 119.99777 * 275.00036 * 15 2 1 17 17 H 1.08003 * 119.99797 * 359.97438 * 16 15 2 18 18 C 1.38806 * 120.00162 * 179.97438 * 16 15 2 19 19 N 1.31617 * 120.00325 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99825 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47263 * 89.99889 * 20 18 16 22 22 H 1.48502 * 109.47263 * 209.99728 * 20 18 16 23 23 H 1.48499 * 109.47274 * 329.99944 * 20 18 16 24 24 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 25 25 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46579 * 304.99685 * 4 2 1 28 28 H 1.08992 * 109.47046 * 64.99868 * 4 2 1 29 29 H 0.97001 * 120.00404 * 359.97438 * 5 4 2 30 30 H 1.09006 * 109.47206 * 270.32883 * 11 10 9 31 31 H 1.08998 * 109.47683 * 30.33100 * 11 10 9 32 32 H 1.08999 * 109.47070 * 150.33143 * 11 10 9 33 33 H 1.07994 * 126.43563 * 179.76514 * 12 10 9 34 34 H 0.96990 * 120.00057 * 94.99539 * 15 2 1 35 35 H 0.97001 * 120.00067 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4283 -2.1912 7 8 3.5685 -1.8844 -3.1423 8 6 5.6447 -1.5349 -2.1318 9 7 6.4246 -1.0836 -1.1696 10 7 7.6533 -1.3481 -1.4356 11 6 8.7910 -0.9947 -0.5830 12 6 7.7447 -1.9965 -2.6234 13 6 6.4844 -2.1352 -3.1003 14 17 6.0009 -2.8899 -4.5870 15 7 2.0184 -0.6906 1.1962 16 6 2.1492 -0.0075 2.3757 17 1 1.8927 1.0406 2.4241 18 6 2.6114 -0.6618 3.5092 19 7 2.7376 -0.0051 4.6428 20 14 3.0558 -2.4743 3.4254 21 1 4.4886 -2.6165 3.0620 22 1 2.8158 -3.1046 4.7484 23 1 2.2162 -3.1429 2.3990 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -1.7199 -1.2951 28 1 1.7516 -0.1584 -2.1369 29 1 3.9824 -0.4622 -0.4319 30 1 9.1571 -0.0053 -0.8572 31 1 8.4754 -0.9890 0.4603 32 1 9.5872 -1.7269 -0.7177 33 1 8.6518 -2.3382 -3.0995 34 1 2.2490 -1.6317 1.1526 35 1 3.0610 -0.4624 5.4349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752875565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:56 Heat of formation + Delta-G solvation = 28.676396 kcal Electronic energy + Delta-G solvation = -20300.119198 eV Core-core repulsion = 16974.575165 eV Total energy + Delta-G solvation = -3325.544033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.094 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.75613 -40.51105 -38.05744 -37.50925 -35.26300 -34.43859 -33.67233 -31.77106 -31.18175 -28.84926 -26.99729 -25.37279 -23.80077 -22.63221 -21.80044 -21.08808 -19.89021 -18.89818 -17.61778 -17.48587 -17.07343 -16.90391 -16.07228 -15.78037 -15.56925 -15.22186 -14.80790 -14.59200 -14.33635 -13.93556 -13.77644 -13.53338 -13.40450 -13.25753 -12.88847 -12.83354 -12.61035 -12.48597 -12.13591 -11.80486 -11.75311 -11.70672 -11.13485 -11.00263 -10.46383 -10.09419 -9.82717 -9.34285 -8.00793 -5.33545 0.37434 0.83715 0.93336 1.37189 1.37790 1.44433 1.69023 2.19694 2.24739 2.47459 3.30977 3.33977 3.55977 3.69952 3.87133 3.95967 4.29750 4.33909 4.39843 4.44137 4.60175 4.70063 4.71737 4.78418 4.88221 5.02436 5.24161 5.34503 5.56100 5.65483 5.80440 6.22768 6.39643 6.71185 7.08070 7.11780 7.83555 8.02084 9.20642 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.005284 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.795113 B = 5298.063727 C = 6441.711900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 H 0.059 0.941 4 C 0.120 3.880 5 N -0.705 5.705 6 C 0.592 3.408 7 O -0.553 6.553 8 C -0.033 4.033 9 N -0.266 5.266 10 N -0.271 5.271 11 C 0.074 3.926 12 C 0.023 3.977 13 C -0.130 4.130 14 Cl -0.017 7.017 15 N -0.749 5.749 16 C -0.220 4.220 17 H 0.064 0.936 18 C -0.054 4.054 19 N -0.981 5.981 20 Si 0.943 3.057 21 H -0.281 1.281 22 H -0.298 1.298 23 H -0.262 1.262 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.411 0.589 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.240 0.760 34 H 0.362 0.638 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.217 -3.930 -16.732 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.077 0.923 4 C -0.004 4.004 5 N -0.356 5.356 6 C 0.377 3.623 7 O -0.430 6.430 8 C -0.193 4.193 9 N -0.104 5.104 10 N -0.060 5.060 11 C -0.064 4.064 12 C -0.121 4.121 13 C -0.168 4.168 14 Cl 0.011 6.989 15 N -0.393 5.393 16 C -0.351 4.351 17 H 0.082 0.918 18 C -0.246 4.246 19 N -0.632 5.632 20 Si 0.772 3.228 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.188 1.188 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.248 0.752 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.157 0.843 33 H 0.256 0.744 34 H 0.195 0.805 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.796 -3.524 -16.272 21.622 hybrid contribution 0.245 -1.237 0.148 1.270 sum 14.041 -4.762 -16.124 21.904 Atomic orbital electron populations 1.22199 0.95893 1.01750 1.01611 1.20675 0.94021 0.95681 0.84163 0.92258 1.21737 0.78709 1.01281 0.98631 1.45916 1.08513 1.58122 1.23098 1.17083 0.84618 0.78115 0.82506 1.90770 1.68794 1.49373 1.34037 1.21852 0.94635 1.07603 0.95197 1.73712 0.91708 1.20692 1.24267 1.45954 1.05379 1.38474 1.16200 1.22774 0.83678 1.05350 0.94559 1.23294 0.99370 1.00954 0.88472 1.21045 0.93473 1.08705 0.93568 1.98342 1.91873 1.79682 1.28959 1.42832 1.79963 1.09416 1.07074 1.19005 1.34567 0.94486 0.87030 0.91794 1.25291 1.02621 1.01372 0.95332 1.69854 1.54883 1.37332 1.01086 0.85586 0.78470 0.82113 0.76594 1.20696 1.22502 1.18760 0.93898 0.90360 0.92982 0.91695 0.89182 0.75242 0.87277 0.88788 0.84286 0.74359 0.80483 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.49 71.98 0.68 -4.29 16 2 C 0.16 5.86 3.05 44.99 0.14 6.00 16 3 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 4 C 0.12 3.90 5.23 86.38 0.45 4.35 16 5 N -0.71 -24.52 5.38 -466.14 -2.51 -27.03 16 6 C 0.59 21.14 7.82 86.74 0.68 21.82 16 7 O -0.55 -21.53 15.87 -3.95 -0.06 -21.59 16 8 C -0.03 -1.06 7.13 42.46 0.30 -0.76 16 9 N -0.27 -7.76 11.66 -48.16 -0.56 -8.32 16 10 N -0.27 -5.28 3.72 -368.88 -1.37 -6.65 16 11 C 0.07 0.65 11.32 127.77 1.45 2.09 16 12 C 0.02 0.40 11.49 83.46 0.96 1.36 16 13 C -0.13 -3.39 6.80 22.44 0.15 -3.24 16 14 Cl -0.02 -0.44 28.17 -2.72 -0.08 -0.52 16 15 N -0.75 -33.67 4.37 -322.93 -1.41 -35.08 16 16 C -0.22 -12.05 10.41 84.03 0.87 -11.18 16 17 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 18 C -0.05 -3.14 5.50 84.86 0.47 -2.68 16 19 N -0.98 -61.68 13.97 21.65 0.30 -61.38 16 20 Si 0.94 45.81 27.74 68.60 1.90 47.71 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 22 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 23 H -0.26 -11.94 6.52 99.48 0.65 -11.29 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.41 15.07 7.86 -92.71 -0.73 14.34 16 30 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.14 0.11 8.13 -2.39 -0.02 0.09 16 33 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.36 16.36 5.66 -92.72 -0.52 15.83 16 35 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -75.68 321.01 2.18 -73.50 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.18 Total: 25.89 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.15 Total: 13.48 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -5.55 Total: -138.47 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.06 Total: -21.59 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.71 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -75.68 2.18 -73.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752875565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.176 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds