Wall clock time and date at job start Tue Mar 31 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34245 * 125.03388 * 2 1 4 4 C 1.46486 * 106.99583 * 179.97438 * 3 2 1 5 5 C 1.39630 * 134.02755 * 179.97438 * 4 3 2 6 6 C 1.36627 * 119.76464 * 180.02562 * 5 4 3 7 7 C 1.38829 * 120.52407 * 0.02562 * 6 5 4 8 8 C 1.37746 * 120.67245 * 0.24182 * 7 6 5 9 9 C 1.39133 * 119.77801 * 359.51605 * 8 7 6 10 10 N 1.36827 * 125.03617 * 179.97438 * 2 1 3 11 11 C 1.46501 * 125.06464 * 0.02562 * 10 2 1 12 12 C 1.50701 * 109.46673 * 269.97478 * 11 10 2 13 13 O 1.21276 * 120.00388 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99741 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99787 * 179.97438 * 14 12 11 16 16 H 1.08993 * 109.47074 * 35.00425 * 15 14 12 17 17 C 1.52998 * 109.47009 * 274.99620 * 15 14 12 18 18 C 1.50708 * 109.46840 * 155.00137 * 15 14 12 19 19 H 1.08000 * 119.99762 * 359.97438 * 18 15 14 20 20 C 1.37870 * 119.99988 * 180.02562 * 18 15 14 21 21 N 1.31523 * 119.99754 * 359.97438 * 20 18 15 22 22 Si 1.86795 * 120.00104 * 180.02562 * 20 18 15 23 23 H 1.48499 * 109.47507 * 89.99987 * 22 20 18 24 24 H 1.48506 * 109.47108 * 209.99997 * 22 20 18 25 25 H 1.48502 * 109.47223 * 329.99641 * 22 20 18 26 26 H 1.08999 * 109.47270 * 269.99670 * 1 2 3 27 27 H 1.08999 * 109.47281 * 29.99985 * 1 2 3 28 28 H 1.08999 * 109.46885 * 150.00332 * 1 2 3 29 29 H 1.08000 * 126.49876 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.11927 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.73526 * 180.02562 * 6 5 4 32 32 H 1.08004 * 119.66320 * 179.97438 * 7 6 5 33 33 H 1.07998 * 120.11741 * 179.68285 * 8 7 6 34 34 H 1.08994 * 109.47175 * 29.97160 * 11 10 2 35 35 H 1.08998 * 109.47459 * 149.97257 * 11 10 2 36 36 H 0.96999 * 120.00024 * 0.02562 * 14 12 11 37 37 H 1.09005 * 109.46711 * 60.00675 * 17 15 14 38 38 H 1.09007 * 109.47121 * 179.97438 * 17 15 14 39 39 H 1.08993 * 109.47860 * 300.00323 * 17 15 14 40 40 H 0.97005 * 119.99327 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6705 0.6456 0.0006 5 6 4.9041 1.2997 0.0005 6 6 6.0589 0.5696 0.0007 7 6 6.0159 -0.8180 0.0006 8 6 4.8099 -1.4836 -0.0048 9 6 3.6214 -0.7603 0.0000 10 7 2.2925 -1.1203 0.0005 11 6 1.7938 -2.4979 0.0006 12 6 1.6230 -2.9700 1.4215 13 8 1.8917 -2.2291 2.3432 14 7 1.1715 -4.2158 1.6679 15 6 1.0059 -4.6751 3.0492 16 1 0.6813 -3.8420 3.6726 17 6 2.3396 -5.2134 3.5710 18 6 -0.0295 -5.7693 3.0940 19 1 -0.5158 -6.0901 2.1846 20 6 -0.3566 -6.3599 4.2961 21 7 0.2353 -5.9688 5.4035 22 14 -1.6394 -7.7166 4.3516 23 1 -0.9763 -9.0327 4.1693 24 1 -2.3324 -7.6892 5.6648 25 1 -2.6296 -7.5065 3.2650 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.9355 2.1236 -0.0004 30 1 4.9453 2.3790 -0.0007 31 1 7.0128 1.0761 0.0010 32 1 6.9374 -1.3813 0.0003 33 1 4.7869 -2.5633 -0.0100 34 1 0.8333 -2.5366 -0.5131 35 1 2.5069 -3.1425 -0.5133 36 1 0.9569 -4.8086 0.9307 37 1 3.0885 -4.4219 3.5385 38 1 2.2165 -5.5547 4.5989 39 1 2.6642 -6.0464 2.9476 40 1 0.0048 -6.3842 6.2493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064332986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:28 Heat of formation + Delta-G solvation = 18.828290 kcal Electronic energy + Delta-G solvation = -22161.923315 eV Core-core repulsion = 18941.925430 eV Total energy + Delta-G solvation = -3219.997886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32373 -38.85862 -36.98446 -34.88979 -32.94836 -32.42530 -31.14573 -30.28802 -29.04898 -26.94961 -26.10755 -25.30799 -22.10297 -21.40582 -21.28685 -19.80466 -19.36540 -17.52380 -16.91800 -16.27516 -15.91921 -15.27186 -15.01151 -14.70990 -14.55691 -14.08112 -13.80303 -13.57133 -13.08724 -12.99634 -12.82176 -12.59342 -12.45303 -12.25123 -12.00729 -11.66748 -11.39182 -11.20539 -11.14783 -10.99333 -10.80896 -10.69543 -10.39540 -10.30196 -9.58437 -9.16425 -9.11633 -8.62889 -8.04176 -7.90629 -7.44581 -6.18448 -4.28741 1.28258 1.79225 2.70686 2.92640 3.15349 3.19873 3.26900 3.28619 3.94431 4.12153 4.31614 4.71119 4.76161 4.84791 5.04818 5.13747 5.14719 5.20243 5.32541 5.33991 5.56951 5.58414 5.61410 5.72826 5.91220 5.96946 6.11262 6.22288 6.60480 6.74135 6.74613 6.88472 6.92742 7.01047 7.07118 7.33200 7.36273 7.40147 7.49518 7.61474 7.82988 8.07406 8.51788 8.68855 8.96931 9.38879 10.87416 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.003824 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.740915 B = 7320.753043 C = 7935.527366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.097 3.903 3 C -0.214 4.214 4 C -0.104 4.104 5 C -0.076 4.076 6 C -0.151 4.151 7 C -0.106 4.106 8 C -0.122 4.122 9 C 0.109 3.891 10 N -0.459 5.459 11 C 0.084 3.916 12 C 0.481 3.519 13 O -0.533 6.533 14 N -0.706 5.706 15 C 0.266 3.734 16 H 0.048 0.952 17 C -0.147 4.147 18 C -0.536 4.536 19 H 0.061 0.939 20 C 0.067 3.933 21 N -0.882 5.882 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.274 1.274 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.144 0.856 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.389 0.611 37 H 0.014 0.986 38 H 0.091 0.909 39 H 0.027 0.973 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 9.538 -13.892 17.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.009 4.009 3 C -0.238 4.238 4 C -0.108 4.108 5 C -0.095 4.095 6 C -0.170 4.170 7 C -0.126 4.126 8 C -0.143 4.143 9 C 0.004 3.996 10 N -0.142 5.142 11 C -0.042 4.042 12 C 0.263 3.737 13 O -0.410 6.410 14 N -0.355 5.355 15 C 0.164 3.836 16 H 0.066 0.934 17 C -0.205 4.205 18 C -0.574 4.574 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.519 5.519 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.161 0.839 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.221 0.779 37 H 0.033 0.967 38 H 0.109 0.891 39 H 0.046 0.954 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.932 9.709 -12.985 16.947 hybrid contribution -0.758 -1.275 -0.122 1.488 sum 4.175 8.434 -13.107 16.136 Atomic orbital electron populations 1.20502 0.88000 1.03145 1.03616 1.20285 0.93466 0.85273 1.01913 1.21314 0.90331 0.97328 1.14869 1.19146 0.93643 0.91919 1.06111 1.20193 0.90537 0.99150 0.99587 1.20547 0.97743 0.93942 1.04786 1.20719 0.96476 0.94412 1.00951 1.20025 0.89908 0.98967 1.05392 1.18158 0.84113 0.93964 1.03394 1.43326 1.03895 1.04512 1.62443 1.21696 1.02688 0.82337 0.97491 1.20658 0.79270 0.83350 0.90443 1.90732 1.50085 1.54800 1.45390 1.46527 1.64357 1.12816 1.11777 1.18767 0.93565 0.94988 0.76242 0.93395 1.22076 0.96639 0.97809 1.04014 1.21190 1.22280 1.19757 0.94211 0.92036 1.24896 0.96418 0.97033 0.95340 1.69910 1.41642 1.41812 0.98581 0.86432 0.81227 0.81750 0.77594 1.20500 1.21012 1.19841 0.90034 0.89866 0.91517 0.83852 0.86411 0.86425 0.86084 0.86669 0.86959 0.87233 0.77871 0.96721 0.89072 0.95427 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.03 36.00 0.36 -0.72 16 2 C 0.10 1.43 6.83 -81.77 -0.56 0.87 16 3 C -0.21 -3.11 10.95 -37.67 -0.41 -3.52 16 4 C -0.10 -1.63 6.37 -105.14 -0.67 -2.30 16 5 C -0.08 -1.03 10.05 -39.64 -0.40 -1.43 16 6 C -0.15 -1.89 9.97 -39.94 -0.40 -2.29 16 7 C -0.11 -1.39 10.01 -39.54 -0.40 -1.79 16 8 C -0.12 -1.83 9.96 -39.43 -0.39 -2.23 16 9 C 0.11 1.80 6.81 -83.98 -0.57 1.23 16 10 N -0.46 -7.23 2.27 -111.14 -0.25 -7.48 16 11 C 0.08 1.18 6.26 -5.19 -0.03 1.14 16 12 C 0.48 9.26 7.86 -10.98 -0.09 9.18 16 13 O -0.53 -12.94 16.09 5.56 0.09 -12.85 16 14 N -0.71 -13.98 5.07 -54.93 -0.28 -14.26 16 15 C 0.27 6.65 2.56 -69.08 -0.18 6.47 16 16 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 17 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 18 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 21 N -0.88 -24.66 11.32 55.43 0.63 -24.03 16 22 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.67 6.92 -51.93 -0.36 0.31 16 29 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.22 6.88 -51.93 -0.36 0.87 16 35 H 0.11 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.39 6.40 8.54 -40.82 -0.35 6.05 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -32.91 339.56 -9.04 -41.95 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.54 Total: 7.50 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -3.78 Total: -11.19 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.10 Total: -45.78 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.91 -9.04 -41.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064332986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.776 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds