Wall clock time and date at job start Tue Mar 31 2020 03:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00361 * 2 1 4 4 H 1.48499 * 109.46983 * 274.12189 * 3 2 1 5 5 H 1.48502 * 109.46630 * 34.12204 * 3 2 1 6 6 H 1.48491 * 109.46908 * 154.12202 * 3 2 1 7 7 C 1.38811 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00214 * 197.15310 * 7 2 1 9 9 N 1.36944 * 120.00062 * 17.15131 * 7 2 1 10 10 C 1.47079 * 120.87904 * 206.97019 * 9 7 2 11 11 C 1.53240 * 108.52180 * 231.20123 * 10 9 7 12 12 N 1.46897 * 109.34019 * 306.17448 * 11 10 9 13 13 C 1.46902 * 111.00230 * 187.25106 * 12 11 10 14 14 C 1.50696 * 109.47325 * 170.00216 * 13 12 11 15 15 C 1.35102 * 126.41424 * 94.68682 * 14 13 12 16 16 N 1.33516 * 108.62942 * 179.89100 * 15 14 13 17 17 C 1.32559 * 109.15675 * 0.37508 * 16 15 14 18 18 C 1.40933 * 132.33038 * 179.74029 * 17 16 15 19 19 C 1.36021 * 119.33156 * 180.02562 * 18 17 16 20 20 C 1.40473 * 119.69292 * 0.02562 * 19 18 17 21 21 C 1.34949 * 120.29968 * 359.97438 * 20 19 18 22 22 N 1.36484 * 120.61071 * 0.04485 * 21 20 19 23 23 C 1.46904 * 111.27105 * 63.10126 * 12 11 10 24 24 C 1.47074 * 120.88257 * 26.98777 * 9 7 2 25 25 H 0.97006 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.62604 * 111.49885 * 10 9 7 27 27 H 1.08998 * 109.79373 * 351.00676 * 10 9 7 28 28 H 1.08995 * 109.49444 * 186.21205 * 11 10 9 29 29 H 1.09002 * 109.51316 * 66.14035 * 11 10 9 30 30 H 1.08998 * 109.47212 * 49.99634 * 13 12 11 31 31 H 1.09005 * 109.46675 * 290.00051 * 13 12 11 32 32 H 1.07997 * 125.68893 * 0.02562 * 15 14 13 33 33 H 1.08000 * 120.33537 * 0.02562 * 18 17 16 34 34 H 1.07997 * 120.15787 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.84953 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.69840 * 179.97438 * 21 20 19 37 37 H 1.09003 * 109.49249 * 56.85780 * 23 12 11 38 38 H 1.09002 * 109.49248 * 176.93470 * 23 12 11 39 39 H 1.08999 * 109.63393 * 248.50775 * 24 9 7 40 40 H 1.09005 * 109.62655 * 8.89276 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4107 2.0966 -1.3965 5 1 1.4940 2.6259 0.7854 6 1 3.5886 1.4164 0.6110 7 6 2.0102 -1.2022 0.0005 8 1 3.0541 -1.2229 0.2764 9 7 1.3711 -2.3619 -0.3487 10 6 1.8252 -3.6603 0.1720 11 6 2.0050 -4.6219 -1.0075 12 7 0.7639 -4.6669 -1.7920 13 6 0.8345 -5.7040 -2.8300 14 6 -0.5274 -5.8899 -3.4478 15 6 -0.9868 -5.2949 -4.5704 16 7 -2.2344 -5.7138 -4.7952 17 6 -2.5889 -6.5585 -3.8371 18 6 -3.7782 -7.2752 -3.5959 19 6 -3.8581 -8.0865 -2.5070 20 6 -2.7582 -8.1983 -1.6404 21 6 -1.6260 -7.5058 -1.8845 22 7 -1.5325 -6.6879 -2.9731 23 6 0.4560 -3.3555 -2.3781 24 6 0.2127 -2.3421 -1.2546 25 1 -0.4850 0.8401 -0.0004 26 1 1.0799 -4.0599 0.8598 27 1 2.7751 -3.5375 0.6924 28 1 2.2344 -5.6191 -0.6321 29 1 2.8222 -4.2741 -1.6394 30 1 1.1624 -6.6429 -2.3839 31 1 1.5441 -5.4000 -3.5995 32 1 -0.4359 -4.5983 -5.1849 33 1 -4.6177 -7.1811 -4.2688 34 1 -4.7632 -8.6415 -2.3092 35 1 -2.8191 -8.8414 -0.7749 36 1 -0.7864 -7.5988 -1.2115 37 1 1.2947 -3.0250 -2.9908 38 1 -0.4380 -3.4345 -2.9967 39 1 -0.6876 -2.6150 -0.7041 40 1 0.0952 -1.3441 -1.6770 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159822365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:56 Heat of formation + Delta-G solvation = 128.451700 kcal Electronic energy + Delta-G solvation = -22579.213407 eV Core-core repulsion = 19396.261900 eV Total energy + Delta-G solvation = -3182.951507 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.75370 -38.20091 -37.26338 -34.67034 -33.49187 -31.58148 -30.24032 -29.92939 -29.39288 -26.90159 -24.74411 -23.62498 -22.77317 -22.51226 -22.00201 -20.81842 -19.10764 -17.24909 -16.85652 -16.72980 -15.96405 -15.91443 -15.01981 -14.86604 -14.41871 -14.35326 -14.14359 -13.49681 -13.44167 -13.16990 -13.04951 -12.64101 -12.37637 -11.87184 -11.75653 -11.69590 -11.42236 -11.10548 -10.95219 -10.76250 -10.49999 -10.32529 -10.11884 -9.95256 -9.76998 -9.61715 -8.77008 -8.51285 -7.95958 -7.67622 -6.67356 -5.78061 -3.20143 0.75933 1.27369 2.62078 2.90517 3.37949 3.44812 3.46324 3.56454 4.24358 4.40592 4.50229 4.52372 4.66715 4.82453 4.98857 5.15726 5.24503 5.38947 5.41633 5.49420 5.56984 5.60923 5.84522 5.87203 5.89978 6.06861 6.09155 6.14021 6.23109 6.31139 6.51090 6.52385 6.68810 6.69276 6.88522 7.10909 7.22014 7.50564 7.63163 7.68950 7.81083 7.93390 8.43299 9.20829 9.84199 10.42779 11.30680 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.025954 B = 0.004008 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.556461 B = 6984.366026 C = 7173.937283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.150 3.850 11 C 0.045 3.955 12 N -0.532 5.532 13 C 0.129 3.871 14 C -0.041 4.041 15 C 0.037 3.963 16 N -0.494 5.494 17 C 0.217 3.783 18 C -0.083 4.083 19 C -0.103 4.103 20 C -0.154 4.154 21 C 0.075 3.925 22 N -0.350 5.350 23 C 0.035 3.965 24 C 0.180 3.820 25 H 0.254 0.746 26 H 0.023 0.977 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.177 0.823 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.161 0.839 37 H 0.027 0.973 38 H 0.064 0.936 39 H 0.023 0.977 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 -17.684 -5.302 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.318 5.318 10 C 0.023 3.977 11 C -0.084 4.084 12 N -0.258 5.258 13 C 0.000 4.000 14 C -0.155 4.155 15 C -0.115 4.115 16 N -0.213 5.213 17 C -0.026 4.026 18 C -0.103 4.103 19 C -0.127 4.127 20 C -0.175 4.175 21 C -0.047 4.047 22 N -0.022 5.022 23 C -0.094 4.094 24 C 0.054 3.946 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.194 0.806 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.179 0.821 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.136 -17.362 -5.604 18.707 hybrid contribution 1.526 0.897 0.196 1.781 sum -2.610 -16.465 -5.408 17.526 Atomic orbital electron populations 1.70041 1.05247 1.25498 1.53866 1.25037 0.95279 0.98384 1.00900 0.86273 0.79115 0.83762 0.77610 1.21475 1.21744 1.20417 1.19210 0.92618 0.84803 1.41768 0.91605 1.44124 1.34776 1.01274 1.51620 1.20950 0.97776 0.86559 0.92430 1.22641 0.89510 0.99405 0.96889 1.62033 1.34870 1.05987 1.22873 1.20392 0.88921 0.96672 0.94053 1.21110 0.93178 1.01717 0.99480 1.22273 0.92042 1.00846 0.96314 1.70727 1.13537 1.13283 1.23796 1.20917 0.90424 1.01206 0.90086 1.20218 0.94710 0.96314 0.99071 1.20987 0.99049 0.98663 0.94018 1.20756 0.92538 1.02341 1.01887 1.21627 1.00814 0.92675 0.89612 1.42621 1.12821 1.28812 1.17947 1.22931 0.99001 0.88781 0.98667 1.20821 0.88905 0.96541 0.88311 0.93598 0.95887 0.92536 0.92140 0.95126 0.90780 0.92579 0.80598 0.83511 0.84322 0.83455 0.82121 0.95476 0.91804 0.95882 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 11.19 55.49 0.62 -26.00 16 2 C 0.00 0.08 4.93 -17.43 -0.09 -0.01 16 3 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.25 -7.04 9.63 -15.06 -0.14 -7.19 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.16 3.04 -172.01 -0.52 -15.68 16 10 C 0.15 3.15 6.69 -3.60 -0.02 3.12 16 11 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 12 N -0.53 -9.28 4.62 -235.76 -1.09 -10.37 16 13 C 0.13 1.80 5.40 -4.98 -0.03 1.78 16 14 C -0.04 -0.62 5.78 -81.47 -0.47 -1.09 16 15 C 0.04 0.58 10.52 -17.94 -0.19 0.39 16 16 N -0.49 -8.27 11.32 -12.78 -0.14 -8.41 16 17 C 0.22 3.27 7.81 -156.04 -1.22 2.05 16 18 C -0.08 -0.96 10.11 -39.36 -0.40 -1.36 16 19 C -0.10 -0.94 10.07 -39.54 -0.40 -1.34 16 20 C -0.15 -1.41 9.99 -39.91 -0.40 -1.81 16 21 C 0.08 0.87 10.85 -16.65 -0.18 0.68 16 22 N -0.35 -5.05 2.95 -58.46 -0.17 -5.22 16 23 C 0.04 0.70 5.46 -3.70 -0.02 0.68 16 24 C 0.18 4.46 5.42 -3.61 -0.02 4.44 16 25 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 28 H 0.06 0.86 7.99 -51.93 -0.41 0.44 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.90 7.97 -51.93 -0.41 0.48 16 31 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 32 H 0.18 2.37 8.06 -52.49 -0.42 1.94 16 33 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 1.24 6.15 -51.93 -0.32 0.93 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 2.41 6.14 -51.93 -0.32 2.09 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -32.92 325.66 -10.68 -43.60 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.66 Total: -0.74 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.60 Total: 1.11 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -1.31 Total: -65.68 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.92 -10.68 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159822365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.048 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds