Wall clock time and date at job start Tue Mar 31 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00361 * 2 1 4 4 H 1.48499 * 109.46983 * 274.12189 * 3 2 1 5 5 H 1.48502 * 109.46630 * 34.12204 * 3 2 1 6 6 H 1.48491 * 109.46908 * 154.12202 * 3 2 1 7 7 C 1.38811 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00214 * 197.15310 * 7 2 1 9 9 N 1.36944 * 120.00062 * 17.15131 * 7 2 1 10 10 C 1.47079 * 120.87904 * 206.97019 * 9 7 2 11 11 C 1.53240 * 108.52180 * 231.20123 * 10 9 7 12 12 N 1.46897 * 109.34019 * 306.17448 * 11 10 9 13 13 C 1.46902 * 111.00230 * 187.25106 * 12 11 10 14 14 C 1.50696 * 109.47325 * 170.00216 * 13 12 11 15 15 C 1.35102 * 126.41424 * 94.68682 * 14 13 12 16 16 N 1.33516 * 108.62942 * 179.89100 * 15 14 13 17 17 C 1.32559 * 109.15675 * 0.37508 * 16 15 14 18 18 C 1.40933 * 132.33038 * 179.74029 * 17 16 15 19 19 C 1.36021 * 119.33156 * 180.02562 * 18 17 16 20 20 C 1.40473 * 119.69292 * 0.02562 * 19 18 17 21 21 C 1.34949 * 120.29968 * 359.97438 * 20 19 18 22 22 N 1.36484 * 120.61071 * 0.04485 * 21 20 19 23 23 C 1.46904 * 111.27105 * 63.10126 * 12 11 10 24 24 C 1.47074 * 120.88257 * 26.98777 * 9 7 2 25 25 H 0.97006 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.62604 * 111.49885 * 10 9 7 27 27 H 1.08998 * 109.79373 * 351.00676 * 10 9 7 28 28 H 1.08995 * 109.49444 * 186.21205 * 11 10 9 29 29 H 1.09002 * 109.51316 * 66.14035 * 11 10 9 30 30 H 1.08998 * 109.47212 * 49.99634 * 13 12 11 31 31 H 1.09005 * 109.46675 * 290.00051 * 13 12 11 32 32 H 1.07997 * 125.68893 * 0.02562 * 15 14 13 33 33 H 1.08000 * 120.33537 * 0.02562 * 18 17 16 34 34 H 1.07997 * 120.15787 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.84953 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.69840 * 179.97438 * 21 20 19 37 37 H 1.09003 * 109.49249 * 56.85780 * 23 12 11 38 38 H 1.09002 * 109.49248 * 176.93470 * 23 12 11 39 39 H 1.08999 * 109.63393 * 248.50775 * 24 9 7 40 40 H 1.09005 * 109.62655 * 8.89276 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4107 2.0966 -1.3965 5 1 1.4940 2.6259 0.7854 6 1 3.5886 1.4164 0.6110 7 6 2.0102 -1.2022 0.0005 8 1 3.0541 -1.2229 0.2764 9 7 1.3711 -2.3619 -0.3487 10 6 1.8252 -3.6603 0.1720 11 6 2.0050 -4.6219 -1.0075 12 7 0.7639 -4.6669 -1.7920 13 6 0.8345 -5.7040 -2.8300 14 6 -0.5274 -5.8899 -3.4478 15 6 -0.9868 -5.2949 -4.5704 16 7 -2.2344 -5.7138 -4.7952 17 6 -2.5889 -6.5585 -3.8371 18 6 -3.7782 -7.2752 -3.5959 19 6 -3.8581 -8.0865 -2.5070 20 6 -2.7582 -8.1983 -1.6404 21 6 -1.6260 -7.5058 -1.8845 22 7 -1.5325 -6.6879 -2.9731 23 6 0.4560 -3.3555 -2.3781 24 6 0.2127 -2.3421 -1.2546 25 1 -0.4850 0.8401 -0.0004 26 1 1.0799 -4.0599 0.8598 27 1 2.7751 -3.5375 0.6924 28 1 2.2344 -5.6191 -0.6321 29 1 2.8222 -4.2741 -1.6394 30 1 1.1624 -6.6429 -2.3839 31 1 1.5441 -5.4000 -3.5995 32 1 -0.4359 -4.5983 -5.1849 33 1 -4.6177 -7.1811 -4.2688 34 1 -4.7632 -8.6415 -2.3092 35 1 -2.8191 -8.8414 -0.7749 36 1 -0.7864 -7.5988 -1.2115 37 1 1.2947 -3.0250 -2.9908 38 1 -0.4380 -3.4345 -2.9967 39 1 -0.6876 -2.6150 -0.7041 40 1 0.0952 -1.3441 -1.6770 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159822365.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:55 Heat of formation + Delta-G solvation = 107.655906 kcal Electronic energy + Delta-G solvation = -22580.115180 eV Core-core repulsion = 19396.261900 eV Total energy + Delta-G solvation = -3183.853280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.75073 -39.71029 -38.21463 -36.35280 -34.57938 -33.36479 -31.68684 -31.26097 -30.58086 -28.41352 -26.26754 -24.70227 -24.27947 -24.03528 -23.18368 -21.85562 -20.84349 -18.79112 -18.18116 -17.66603 -17.26742 -16.77695 -16.70140 -16.06867 -15.94483 -15.59804 -15.36648 -15.31643 -14.90458 -14.77181 -14.48910 -13.84512 -13.36992 -13.22783 -13.09671 -12.93800 -12.74140 -12.63491 -12.53647 -12.29193 -12.10239 -11.93218 -11.86969 -11.63798 -11.46363 -11.05057 -10.61713 -9.75082 -9.34282 -8.76088 -8.64723 -7.89726 -5.35397 -0.08153 0.34378 1.45253 1.46831 1.56183 1.67394 1.87032 2.49223 2.64289 3.06102 3.26211 3.34508 3.62464 3.66097 3.75751 4.04079 4.12980 4.17465 4.26117 4.29494 4.34082 4.51713 4.56152 4.64719 4.66530 4.70305 4.77716 4.89341 4.98677 5.09055 5.16153 5.22782 5.31407 5.33874 5.59074 5.62397 5.64941 5.66677 6.09977 6.14888 6.22731 6.34899 6.88123 7.10308 7.81397 8.35909 9.17243 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.025954 B = 0.004008 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.556461 B = 6984.366026 C = 7173.937283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.264 4.264 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.144 3.856 11 C 0.056 3.944 12 N -0.540 5.540 13 C 0.138 3.862 14 C -0.058 4.058 15 C 0.019 3.981 16 N -0.537 5.537 17 C 0.200 3.800 18 C -0.112 4.112 19 C -0.081 4.081 20 C -0.140 4.140 21 C 0.047 3.953 22 N -0.355 5.355 23 C 0.057 3.943 24 C 0.191 3.809 25 H 0.249 0.751 26 H 0.013 0.987 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.031 0.969 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.183 0.817 33 H 0.160 0.840 34 H 0.180 0.820 35 H 0.188 0.812 36 H 0.178 0.822 37 H 0.026 0.974 38 H 0.064 0.936 39 H -0.013 1.013 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.618 -20.271 -4.569 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.394 4.394 8 H 0.089 0.911 9 N -0.337 5.337 10 C 0.018 3.982 11 C -0.072 4.072 12 N -0.266 5.266 13 C 0.010 3.990 14 C -0.172 4.172 15 C -0.133 4.133 16 N -0.258 5.258 17 C -0.044 4.044 18 C -0.132 4.132 19 C -0.105 4.105 20 C -0.161 4.161 21 C -0.075 4.075 22 N -0.027 5.027 23 C -0.072 4.072 24 C 0.065 3.935 25 H 0.058 0.942 26 H 0.031 0.969 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.049 0.951 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.200 0.800 33 H 0.177 0.823 34 H 0.197 0.803 35 H 0.205 0.795 36 H 0.195 0.805 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.005 0.995 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.470 -19.995 -4.864 20.869 hybrid contribution 1.216 1.536 0.071 1.960 sum -2.254 -18.459 -4.793 19.204 Atomic orbital electron populations 1.70214 1.06877 1.25838 1.55545 1.25833 0.95990 1.01671 1.01221 0.85224 0.78284 0.79416 0.77372 1.21362 1.22226 1.18881 1.19589 0.93041 0.85943 1.40853 0.91064 1.44397 1.34623 1.02465 1.52226 1.21149 0.97550 0.85386 0.94114 1.22501 0.89175 1.00361 0.95195 1.61915 1.35356 1.05080 1.24202 1.20403 0.88802 0.96357 0.93447 1.21171 0.93849 1.02493 0.99674 1.22513 0.92176 1.01408 0.97200 1.70658 1.14409 1.15156 1.25579 1.21496 0.91668 1.01184 0.90005 1.20586 0.94223 0.97441 1.00937 1.21537 1.00274 0.96620 0.92066 1.21354 0.91303 1.01042 1.02358 1.22215 1.02683 0.93172 0.89447 1.42773 1.12358 1.29014 1.18532 1.22472 0.99039 0.89277 0.96412 1.20500 0.87737 0.96120 0.89156 0.94166 0.96870 0.91700 0.87912 0.95107 0.87954 0.91500 0.79984 0.82261 0.80292 0.79524 0.80496 0.95582 0.91766 0.99482 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.46 11.19 21.65 0.24 -57.22 16 2 C -0.05 -2.97 4.93 84.86 0.42 -2.55 16 3 Si 0.97 45.57 29.59 68.60 2.03 47.60 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.26 -14.78 9.63 84.03 0.81 -13.97 16 8 H 0.07 3.83 7.89 -2.91 -0.02 3.80 16 9 N -0.61 -31.70 3.04 -698.13 -2.12 -33.82 16 10 C 0.14 5.91 6.69 86.35 0.58 6.48 16 11 C 0.06 1.79 5.62 86.38 0.49 2.28 16 12 N -0.54 -18.04 4.62 -899.81 -4.16 -22.20 16 13 C 0.14 3.57 5.40 85.56 0.46 4.03 16 14 C -0.06 -1.71 5.78 41.05 0.24 -1.47 16 15 C 0.02 0.59 10.52 83.71 0.88 1.47 16 16 N -0.54 -18.57 11.32 -194.35 -2.20 -20.77 16 17 C 0.20 6.00 7.81 134.10 1.05 7.04 16 18 C -0.11 -2.42 10.11 22.41 0.23 -2.19 16 19 C -0.08 -1.18 10.07 22.30 0.22 -0.96 16 20 C -0.14 -2.01 9.99 22.06 0.22 -1.79 16 21 C 0.05 0.95 10.85 83.21 0.90 1.85 16 22 N -0.36 -9.86 2.95 -338.88 -1.00 -10.86 16 23 C 0.06 2.32 5.46 86.38 0.47 2.79 16 24 C 0.19 9.85 5.42 86.35 0.47 10.32 16 25 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 26 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.06 2.52 7.96 -2.39 -0.02 2.50 16 28 H 0.10 2.46 7.99 -2.39 -0.02 2.44 16 29 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 2.09 7.97 -2.39 -0.02 2.07 16 31 H 0.07 1.62 8.12 -2.38 -0.02 1.60 16 32 H 0.18 5.13 8.06 -2.91 -0.02 5.11 16 33 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 2.58 6.15 -2.39 -0.01 2.57 16 39 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 40 H 0.05 3.03 6.14 -2.38 -0.01 3.02 16 Total: -1.00 -75.22 325.66 1.25 -73.96 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.03 Total: 9.95 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 7.43 Total: 13.35 kcal Atomic # 7 Polarization: -135.63 SS G_CDS: -9.23 Total: -144.86 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -75.22 1.25 -73.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159822365.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.618 kcal (2) G-P(sol) polarization free energy of solvation -75.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds